Rh7BG107600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016331
Physical Location & Seq
Reverse (-)
8099062 .. 8099421
360 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG107600.1

Sequence Viewer

Length: 360 bp
ATGGAAAGCCTAAAGGCAAATGACCCTAGTGTTAAAAGTACTCAAGTGGAGAAGCTACAAGAGCAGTTCATGAATTTGCAACAGGAGTGGAAGTCGTACAAACAGTCCTACCCCAAAACCAAGAGGAGATCATATTCTTCATCATCAAGCACCATGGCCAAAACCCGATCAAGGCACCTCATGTCTTCACTTCAACACAGAATGTTTCCCTCGGAAGGCGATAATTGGAATGTCAGGACTAATGATTTTGCAGTGGAAGAGATCAGAAGAGACCGAAGGGCGGCGATTGAGAGTGGCAAGTTGAAGGGGAGGAGGCTGTTTGAGGATGAGCATGAAGAAACTGAGATTGGTTATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

14.04

Weight (kDa)

9.43

Isoelectric Point (pI)

90.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016331)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g08620
malus_domestica MD06G1138600.v1.1 MD14G1154600.v1.1
prunus_persica Prupe.5G148800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0189791
rosa_laevigata RLG00000004590
rosa_multiflora Rmu_sc0014337.1_g000002 Rmu_sc0029387.1_g000002
rosa_roxburghii Rroxscaffold_3G00265160
rosa_rugosa Rorug06G0499900
rosa_samantha Rh7AG105000 Rh7BG107600 Rh7CG109600 Rh7DG108000
rosa_wichuraiana Rw7G009090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 174
AciI CCGC 1 cut(s) 281
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 2 cut(s) 40, 98
AfiI CCNNNNNNNGG 3 cut(s) 171, 215, 280
AgsI TTSAA 2 cut(s) 194, 304
AjuI GAANNNNNNNTTGG 1 cut(s) 330
AluBI AGCT 1 cut(s) 55
AluI AGCT 1 cut(s) 55
Alw26I GTCTC 1 cut(s) 264
AoxI GGCC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 73
BalI TGGCCA 1 cut(s) 158
BanI GGYRCC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 177
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
BmcAI AGTACT 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 153, 210
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 215, 280
BseDI CCNNGG 2 cut(s) 153, 210
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 3 cut(s) 171, 215, 280
BseMII CTCAG 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 139, 325
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 174
BslI CCNNNNNNNGG 3 cut(s) 171, 215, 280
BsmAI GTCTC 1 cut(s) 264
BsnI GGCC 1 cut(s) 158
Bso31I GGTCTC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 128, 167, 261
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 281
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 153, 210
BssMI GATC 3 cut(s) 128, 167, 261
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 2 cut(s) 252, 262
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 3 cut(s) 131, 170, 264
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 3 cut(s) 128, 167, 261
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 1 cut(s) 258
CciI TCATGA 1 cut(s) 69
Csp6I GTAC 2 cut(s) 39, 97
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CviAII CATG 4 cut(s) 70, 154, 181, 332
CviJI RGCY 4 cut(s) 9, 55, 158, 316
CviKI_1 RGCY 4 cut(s) 9, 55, 158, 316
CviQI GTAC 2 cut(s) 39, 97
DdeI CTNAG 1 cut(s) 342
DpnI GATC 3 cut(s) 130, 169, 263
DpnII GATC 3 cut(s) 128, 167, 261
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 252, 262
EarI CTCTTC 2 cut(s) 252, 262
Eco130I CCWWGG 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 73, 157, 184, 335
FaiI YATR 6 cut(s) 71, 133, 155, 182, 333, 354
FatI CATG 4 cut(s) 69, 153, 180, 331
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 282
HaeIII GGCC 1 cut(s) 158
Hin1II CATG 4 cut(s) 73, 157, 184, 335
Hpy188I TCNGA 2 cut(s) 214, 266
Hpy188III TCNNGA 2 cut(s) 70, 235
HpyAV CCTTC 3 cut(s) 209, 270, 298
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 79, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 4 cut(s) 73, 157, 184, 335
Kzo9I GATC 3 cut(s) 128, 167, 261
LpnPI CCDG 2 cut(s) 68, 220
MaeI CTAG 1 cut(s) 27
MalI GATC 3 cut(s) 130, 169, 263
MboI GATC 3 cut(s) 128, 167, 261
MboII GAAGA 5 cut(s) 129, 177, 269, 279, 347
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 2 cut(s) 73, 223
MluNI TGGCCA 1 cut(s) 158
MnlI CCTC 6 cut(s) 117, 188, 220, 303, 306, 316
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 1 cut(s) 33
Msp20I TGGCCA 1 cut(s) 158
MwoI GCNNNNNNNGC 1 cut(s) 61
NcoI CCATGG 1 cut(s) 153
NdeII GATC 3 cut(s) 128, 167, 261
NlaIII CATG 4 cut(s) 73, 157, 184, 335
NlaIV GGNNCC 1 cut(s) 176
PagI TCATGA 1 cut(s) 69
PkrI GCNGC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 176
RsaI GTAC 2 cut(s) 40, 98
RsaNI GTAC 2 cut(s) 39, 97
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 3 cut(s) 128, 167, 261
ScaI AGTACT 1 cut(s) 40
SetI ASST 2 cut(s) 57, 180
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 73, 223
SsiI CCGC 1 cut(s) 281
SspMI CTAG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 105
TaqII GACCGA 1 cut(s) 288
TasI AATT 2 cut(s) 73, 223
TatI WGTACW 1 cut(s) 38
TauI GCSGC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TscAI CASTG 1 cut(s) 258
TspDTI ATGAA 4 cut(s) 58, 86, 129, 348
TspRI CASTG 1 cut(s) 258
XapI RAATTY 1 cut(s) 73
XspI CTAG 1 cut(s) 27
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.