Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015313

Physical Location & Seq

Genomic Coordinates Reverse (-)

5231508 .. 5234242

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09050.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGGACTTTGCTAGGGTTCAGAAGGAGCTTCTGGAATGCAGCAGAGACATAGAGCGCTCTGGCATCAAAGTCGTCCCCAAAAGCGATGGTAATCTTGCCCATTTAGTTGGAACCATACCCGGCCCAATGGGCACTCCTTATGAAGGTGGCACTTTTCAGATCGATATCTCGTTGCCAGATGCGTATCCGTTTGAGCCTCCCAAAATGCAGTTCACAACCAAAGTTTGGCACCCTAATATCAGCAGTCAAAGTGGAGCAATATGTCTAGATATTTTGAAGGATCAATGGAGCCCAGCTCTCACATTGAAAACAGCACTTCTTTCTGTACAAGCATTACTTTCTGCTCCTCAACCTGATGATCCTCAAGATGCTGTGGTGGCACAACAGTATCTGAGAGACTATCAGACCTTTGTTGGCACAGCTCGATACTGGACAGAATCCTTTGCTAAGTCATCATCTCTTGGGATTGATGAAAAGGTAAAAAGACTTGTAGAGATGGGCTTCCCTGAAGGTCGGGCAAGGAGTGCTTTGGAAACTGTTGGTGGGGATGAGAACTTGGCCCTTGAAAGTCTTTGCTCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UBA UQ_con

Protein Analysis

196

Amino Acids

21.3

Weight (kDa)

4.86

Isoelectric Point (pI)

44.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 145	6.1e-45	Ubiquitin-conjugating enzyme
UBA	PF00627	159 - 192	1.2e-06	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50870
fragaria_vesca	FvH4_5g09050
malus_domestica	MD06G1134200.v1.1 MD14G1150500.v1.1
prunus_persica	Prupe.5G145200_v2.0.a1
pyrus_communis	pycom06g12530 pycom14g12500
rosa_chinensis	RchiOBHm_Chr7g0189161
rosa_laevigata	RLG00000004627
rosa_multiflora	Rmu_sc0007859.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265740
rosa_rugosa	Rorug06G0496300
rosa_samantha	Rh7AG101100 Rh7BG103700 Rh7CG105100
rosa_wichuraiana	Rw7G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	231
AccB7I	CCANNNNNTGG	1 cut(s)	228
AclWI	GGATC	2 cut(s)	291, 356
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	1 cut(s)	330
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	146, 228
AgsI	TTSAA	3 cut(s)	280, 310, 569
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	3 cut(s)	31, 299, 425
AluI	AGCT	3 cut(s)	31, 299, 425
Alw26I	GTCTC	2 cut(s)	42, 393
AlwI	GGATC	2 cut(s)	291, 356
AlwNI	CAGNNNCTG	1 cut(s)	394
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	124, 561
ApeKI	GCWGC	1 cut(s)	42
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	125, 562
AsuC2I	CCSGG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BanI	GGYRCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	83, 493
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BciVI	GTATCC	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	42, 393
BfaI	CTAG	2 cut(s)	15, 269
BfoI	RGCGCY	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	132
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	123
BmgT120I	GGNCC	2 cut(s)	125, 562
BmiI	GGNNCC	3 cut(s)	115, 233, 293
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	75, 172, 361
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	3 cut(s)	93, 167, 186
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 228
Bse1I	ACTGG	1 cut(s)	437
Bse8I	GATNNNNATC	3 cut(s)	93, 167, 186
BseCI	ATCGAT	1 cut(s)	165
BseGI	GGATG	1 cut(s)	556
BseJI	GATNNNNATC	3 cut(s)	93, 167, 186
BseLI	CCNNNNNNNGG	2 cut(s)	146, 228
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	339
BseSI	GKGCMC	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	126, 563
BshNI	GGYRCC	1 cut(s)	231
BshVI	ATCGAT	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	123, 582
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	146, 228
BsmAI	GTCTC	2 cut(s)	42, 393
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	126, 563
Bsp1286I	GDGCHC	2 cut(s)	137, 296
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	162, 283, 361
BspANI	GGCC	2 cut(s)	126, 563
BspCNI	CTCAG	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	115, 233, 293
BspPI	GGATC	2 cut(s)	291, 356
BspT107I	GGYRCC	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	437
BssMI	GATC	3 cut(s)	162, 283, 361
Bst4CI	ACNGT	2 cut(s)	390, 541
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	395, 450
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	3 cut(s)	165, 286, 364
BstMAI	GTCTC	2 cut(s)	42, 393
BstMBI	GATC	3 cut(s)	162, 283, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 380, 527
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	54
BstXI	CCANNNNNNTGG	1 cut(s)	110
Bsu15I	ATCGAT	1 cut(s)	165
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	126, 563
BsuTUI	ATCGAT	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	125, 562
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	329
CviJI	RGCY	8 cut(s)	31, 126, 199, 294, 299, 425, 504, 563
CviKI_1	RGCY	8 cut(s)	31, 126, 199, 294, 299, 425, 504, 563
CviQI	GTAC	1 cut(s)	329
DdeI	CTNAG	2 cut(s)	395, 450
DpnI	GATC	3 cut(s)	164, 285, 363
DpnII	GATC	3 cut(s)	162, 283, 361
Eco24I	GRGCYC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	296
FaiI	YATR	4 cut(s)	53, 119, 144, 265
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 514, 546
FaqI	GGGAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	2 cut(s)	15, 269
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	126, 563
HapII	CCGG	2 cut(s)	123, 582
HhaI	GCGC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	2 cut(s)	123, 582
Hpy166II	GTNNAC	2 cut(s)	7, 216
Hpy188I	TCNGA	4 cut(s)	24, 162, 396, 408
Hpy188III	TCNNGA	3 cut(s)	35, 269, 368
Hpy8I	GTNNAC	2 cut(s)	7, 216
HpyAV	CCTTC	4 cut(s)	19, 140, 274, 506
HpyCH4III	ACNGT	2 cut(s)	390, 541
HpyCH4V	TGCA	2 cut(s)	42, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 380, 527
HpyF3I	CTNAG	2 cut(s)	395, 450
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	162, 283, 361
LmnI	GCTCC	5 cut(s)	28, 257, 291, 352, 584
LpnPI	CCDG	8 cut(s)	20, 48, 136, 192, 309, 369, 418, 522
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	3 cut(s)	75, 172, 361
MaeI	CTAG	2 cut(s)	15, 269
MalI	GATC	3 cut(s)	164, 285, 363
MboI	GATC	3 cut(s)	162, 283, 361
MhlI	GDGCHC	2 cut(s)	137, 296
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	3 cut(s)	210, 360, 375
MspI	CCGG	2 cut(s)	123, 582
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	44
MwoI	GCNNNNNNNGC	3 cut(s)	132, 380, 527
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	3 cut(s)	162, 283, 361
NlaIV	GGNNCC	3 cut(s)	115, 233, 293
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	3 cut(s)	115, 233, 293
PspPI	GGNCC	2 cut(s)	125, 562
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	330
RsaNI	GTAC	1 cut(s)	329
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	162, 283, 361
Sau96I	GGNCC	2 cut(s)	125, 562
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	2 cut(s)	137, 296
SetI	ASST	8 cut(s)	33, 151, 301, 358, 413, 427, 483, 517
SfaNI	GCATC	3 cut(s)	75, 172, 361
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
SspMI	CTAG	2 cut(s)	15, 269
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	390, 541
TaqI	TCGA	2 cut(s)	165, 427
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	159, 489
TspGWI	ACGGA	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	228
XagI	CCTNNNNNAGG	1 cut(s)	144
XbaI	TCTAGA	1 cut(s)	268
XspI	CTAG	2 cut(s)	15, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.