Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0015313

Physical Location & Seq

Genomic Coordinates Forward (+)

27842057 .. 27844984

Gene Structure 2928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1134200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTAGACTTTGCTAGGGTTCAGAAGGAGCTTCAGGAATGCAGCAGAGACATGGAGCGCTCGGGCATCAAAGTCATACCCAAGAACGAAGCCACTCTTGCCCGTTTAATCGGAACAATTCCCGGCCCAATGGGTACCCCTTATGAGGGCGGCACCTTTCAGATCGACATCGCCTTGCCAGATGCATACCCTTTTGAGCCTCCCAAAATGCAGTTTACGACCAAAGTTTGGCACCCTAATATTAGCAGTCAGAGTGGAGCAATTTGTCTTGATATATTGAAGGACCAATGGAGCCCAGCTCTCACATTGAAGACAGCACTTCTATCTGTACAAGCTTTGCTTTCTGCTCCTCAGCCGGATGATCCTCAAGATGCTGTGGTGGCACAGCAGTATCTGAAAGATTATCAGACCTTTGTTGGCACAGCTCGGTACTGGACAGAAACATTTGCTAAGAAATCATCTCTTGGGATTGATGAAAAGGTACAAAAGCTTGTTGAGATGGGCTTCCCCGAAGCTCAGGCAAGGAGTACTTTGGAAGCCGTTGGTGGGGATGAGAACTTAGCCCTCGAAAAGCTTTGCTCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UBA UQ_con

Protein Analysis

196

Amino Acids

21.44

Weight (kDa)

4.88

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 145	3.5e-45	Ubiquitin-conjugating enzyme
UBA	PF00627	159 - 192	5.1e-07	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50870
fragaria_vesca	FvH4_5g09050
malus_domestica	MD06G1134200.v1.1 MD14G1150500.v1.1
prunus_persica	Prupe.5G145200_v2.0.a1
pyrus_communis	pycom06g12530 pycom14g12500
rosa_chinensis	RchiOBHm_Chr7g0189161
rosa_laevigata	RLG00000004627
rosa_multiflora	Rmu_sc0007859.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265740
rosa_rugosa	Rorug06G0496300
rosa_samantha	Rh7AG101100 Rh7BG103700 Rh7CG105100
rosa_wichuraiana	Rw7G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	3 cut(s)	134, 152, 231
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	6
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	5 cut(s)	136, 330, 431, 483, 529
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	4 cut(s)	145, 146, 228, 546
AgsI	TTSAA	2 cut(s)	280, 310
AluBI	AGCT	7 cut(s)	31, 299, 335, 425, 490, 515, 574
AluI	AGCT	7 cut(s)	31, 299, 335, 425, 490, 515, 574
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	61
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	125, 283
AsuC2I	CCSGG	1 cut(s)	123
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BanI	GGYRCC	3 cut(s)	134, 152, 231
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	317
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	1 cut(s)	524
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	61
BisI	GCNGC	2 cut(s)	43, 151
BlsI	GCNGC	2 cut(s)	44, 152
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	125, 283
BmiI	GGNNCC	4 cut(s)	136, 154, 233, 293
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	3 cut(s)	75, 172, 361
BpiI	GAAGAC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bpu10I	CCTNAGC	2 cut(s)	351, 516
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	167
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 146, 228, 546
Bse1I	ACTGG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	167
BseGI	GGATG	2 cut(s)	364, 556
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	4 cut(s)	145, 146, 228, 546
BseMII	CTCAG	2 cut(s)	365, 530
BseNI	ACTGG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	3 cut(s)	134, 152, 231
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	123, 356, 582
BslI	CCNNNNNNNGG	4 cut(s)	145, 146, 228, 546
BsmAI	GTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	162, 361
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	364, 529
BspLI	GGNNCC	4 cut(s)	136, 154, 233, 293
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	3 cut(s)	134, 152, 231
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	437
BssMI	GATC	2 cut(s)	162, 361
BstAUI	TGTACA	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	351, 450, 516, 559
BstF5I	GGATG	2 cut(s)	364, 556
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	165, 364
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	162, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 380
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	364, 556
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	125, 283
Csp6I	GTAC	5 cut(s)	135, 329, 430, 482, 528
CviAII	CATG	1 cut(s)	52
CviQI	GTAC	5 cut(s)	135, 329, 430, 482, 528
DdeI	CTNAG	4 cut(s)	351, 450, 516, 559
DpnI	GATC	2 cut(s)	164, 363
DpnII	GATC	2 cut(s)	162, 361
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	1 cut(s)	55
FaiI	YATR	5 cut(s)	53, 77, 144, 187, 275
FalI	AAGNNNNNCTT	6 cut(s)	81, 113, 324, 356, 514, 546
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	43, 151
FokI	GGATG	2 cut(s)	371, 563
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	2 cut(s)	43, 151
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	43, 151
GsaI	CCCAGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	123, 356, 582
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HindIII	AAGCTT	3 cut(s)	333, 488, 572
HpaII	CCGG	3 cut(s)	123, 356, 582
Hpy166II	GTNNAC	2 cut(s)	7, 216
Hpy188I	TCNGA	6 cut(s)	24, 113, 162, 252, 396, 408
Hpy188III	TCNNGA	3 cut(s)	35, 269, 368
Hpy8I	GTNNAC	2 cut(s)	7, 216
HpyAV	CCTTC	2 cut(s)	19, 274
HpyCH4V	TGCA	3 cut(s)	42, 185, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 380
HpyF3I	CTNAG	4 cut(s)	351, 450, 516, 559
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	162, 361
LmnI	GCTCC	6 cut(s)	28, 55, 257, 291, 352, 584
LpnPI	CCDG	7 cut(s)	20, 136, 192, 309, 369, 418, 503
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	3 cut(s)	75, 172, 361
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	164, 363
MboI	GATC	2 cut(s)	162, 361
MboII	GAAGA	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	117, 261
MnlI	CCTC	5 cut(s)	139, 210, 360, 375, 575
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	1 cut(s)	107
MspI	CCGG	3 cut(s)	123, 356, 582
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	98, 380
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	162, 361
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	4 cut(s)	136, 154, 233, 293
NsiI	ATGCAT	1 cut(s)	187
PctI	GAATGC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	2 cut(s)	44, 152
PspFI	CCCAGC	1 cut(s)	295
PspN4I	GGNNCC	4 cut(s)	136, 154, 233, 293
PspPI	GGNCC	2 cut(s)	125, 283
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	5 cut(s)	136, 330, 431, 483, 529
RsaNI	GTAC	5 cut(s)	135, 329, 430, 482, 528
SaqAI	TTAA	1 cut(s)	107
SatI	GCNGC	2 cut(s)	43, 151
Sau3AI	GATC	2 cut(s)	162, 361
Sau96I	GGNCC	2 cut(s)	125, 283
ScaI	AGTACT	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	3 cut(s)	75, 172, 361
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	117, 261
SsiI	CCGC	1 cut(s)	150
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	121
TaqI	TCGA	2 cut(s)	165, 567
TasI	AATT	2 cut(s)	117, 261
TatI	WGTACW	2 cut(s)	328, 527
TauI	GCSGC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	489
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	529
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.