Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015313

Physical Location & Seq

Genomic Coordinates Forward (+)

13352857 .. 13356258

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G145200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTAGACTTTGCTAGGGTTCAAAAGGAGCTTCAGGAATGCAGCCGAGACGTCGAGCGCTCAGGTATCAAAGTCAGCCCCAAAGGCGACGGTAGTCTTGCCCGTTTAATTGGAACCATTCCTGGCCCAACTGGTACCCCTTACGAGGGTGGCACTTTTCAGATCGATATCGCATTGCCAGATGCATACCCTTTTGAGCCTCCCAAAATGAAGTTTACGACCAAAGTTTGGCACCCTAATATCAGCAGTCAAAGTGGAGCAATTTGTCTGGATATTTTGAAGGACCAATGGAGCCCAGCTCTCACATTGAAAACAGCACTTCTTTCTGTACAAGCATTACTTTCTGCTCCTCAACCAGATGATCCTCAAGATGCTGTGGTGGCACAACAGTATCTTAAAGATTACCAGACCTTTGTTGGCACAGCTCGATACTGGACTGAAACTTTTGCCAAGAAATCGTCTCTTGGGATTGAGGAAAAGGTACAAAAACTTGTAGAGATGGGGTTCCCTGAAGGTCAGGCAAGGACTACTTTGGAAGCTGTTGGTGGGGATGAGAACTTGGCCCTTGAAAAGCTTTGCTCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UBA UQ_con

Protein Analysis

196

Amino Acids

21.26

Weight (kDa)

5.0

Isoelectric Point (pI)

43.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50870
fragaria_vesca	FvH4_5g09050
malus_domestica	MD06G1134200.v1.1 MD14G1150500.v1.1
prunus_persica	Prupe.5G145200_v2.0.a1
pyrus_communis	pycom06g12530 pycom14g12500
rosa_chinensis	RchiOBHm_Chr7g0189161
rosa_laevigata	RLG00000004627
rosa_multiflora	Rmu_sc0007859.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265740
rosa_rugosa	Rorug06G0496300
rosa_samantha	Rh7AG101100 Rh7BG103700 Rh7CG105100
rosa_wichuraiana	Rw7G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	54
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	2 cut(s)	134, 231
AccB7I	CCANNNNNTGG	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	356
AcuI	CTGAAG	2 cut(s)	17, 531
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	3 cut(s)	136, 330, 483
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	3 cut(s)	145, 146, 228
AgsI	TTSAA	4 cut(s)	23, 280, 310, 569
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	5 cut(s)	31, 299, 425, 539, 574
AluI	AGCT	5 cut(s)	31, 299, 425, 539, 574
Alw26I	GTCTC	2 cut(s)	42, 465
AlwI	GGATC	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	124, 561
ApeKI	GCWGC	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	3 cut(s)	125, 283, 562
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BanI	GGYRCC	2 cut(s)	134, 231
BanII	GRGCYC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	42, 465
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	125, 283, 562
BmiI	GGNNCC	5 cut(s)	115, 136, 233, 293, 506
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	172, 361
BoxI	GACNNNNGTC	1 cut(s)	93
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
Bpu10I	CCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	1 cut(s)	351
Bsa29I	ATCGAT	1 cut(s)	165
BsaBI	GATNNNNATC	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	581
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 146, 228
Bse1I	ACTGG	2 cut(s)	136, 437
Bse3DI	GCAATG	1 cut(s)	173
Bse8I	GATNNNNATC	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	123
BseCI	ATCGAT	1 cut(s)	165
BseGI	GGATG	1 cut(s)	556
BseJI	GATNNNNATC	1 cut(s)	167
BseLI	CCNNNNNNNGG	3 cut(s)	145, 146, 228
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	136, 437
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	126, 563
BshNI	GGYRCC	2 cut(s)	134, 231
BshVI	ATCGAT	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	145, 146, 228
BsmAI	GTCTC	2 cut(s)	42, 465
BsmBI	CGTCTC	2 cut(s)	42, 465
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	126, 563
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	162, 361
BspANI	GGCC	2 cut(s)	126, 563
BspCNI	CTCAG	1 cut(s)	74
BspDI	ATCGAT	1 cut(s)	165
BspLI	GGNNCC	5 cut(s)	115, 136, 233, 293, 506
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	2 cut(s)	134, 231
BsrDI	GCAATG	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	136, 437
BssMI	GATC	2 cut(s)	162, 361
BssNI	GRCGYC	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	92, 390
BstACI	GRCGYC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	165, 364
BstMAI	GTCTC	2 cut(s)	42, 465
BstMBI	GATC	2 cut(s)	162, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 380
BstNI	CCWGG	1 cut(s)	123
BstPAI	GACNNNNGTC	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	126, 563
BsuTUI	ATCGAT	1 cut(s)	165
BtsCI	GGATG	1 cut(s)	556
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	3 cut(s)	125, 283, 562
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	3 cut(s)	135, 329, 482
CviQI	GTAC	3 cut(s)	135, 329, 482
DdeI	CTNAG	1 cut(s)	61
DpnI	GATC	2 cut(s)	164, 363
DpnII	GATC	2 cut(s)	162, 361
Eco24I	GRGCYC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	59
Eco57I	CTGAAG	2 cut(s)	17, 531
EcoRII	CCWGG	1 cut(s)	121
EcoRV	GATATC	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	296
Esp3I	CGTCTC	2 cut(s)	42, 465
FaiI	YATR	1 cut(s)	187
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 514, 546
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	126, 563
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HindIII	AAGCTT	1 cut(s)	572
HpaII	CCGG	1 cut(s)	582
Hpy166II	GTNNAC	2 cut(s)	7, 216
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	3 cut(s)	35, 269, 368
Hpy8I	GTNNAC	2 cut(s)	7, 216
Hpy99I	CGWCG	2 cut(s)	56, 92
HpyAV	CCTTC	2 cut(s)	274, 506
HpyCH4III	ACNGT	2 cut(s)	92, 390
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	2 cut(s)	42, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 380
HpyF3I	CTNAG	1 cut(s)	61
HpySE526I	ACGT	1 cut(s)	51
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	162, 361
LmnI	GCTCC	5 cut(s)	28, 257, 291, 352, 584
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	172, 361
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	51
MalI	GATC	2 cut(s)	164, 363
MboI	GATC	2 cut(s)	162, 361
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	108, 261
MnlI	CCTC	5 cut(s)	139, 210, 360, 375, 466
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	2 cut(s)	107, 396
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	84, 380
NdeII	GATC	2 cut(s)	162, 361
NlaIV	GGNNCC	5 cut(s)	115, 136, 233, 293, 506
NmeAIII	GCCGAG	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	187
PctI	GAATGC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	121
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	5 cut(s)	115, 136, 233, 293, 506
PspPI	GGNCC	3 cut(s)	125, 283, 562
RsaI	GTAC	3 cut(s)	136, 330, 483
RsaNI	GTAC	3 cut(s)	135, 329, 482
SaqAI	TTAA	2 cut(s)	107, 396
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	2 cut(s)	162, 361
Sau96I	GGNCC	3 cut(s)	125, 283, 562
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	2 cut(s)	172, 361
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	108, 261
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	121
TaaI	ACNGT	2 cut(s)	92, 390
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	3 cut(s)	54, 165, 427
TasI	AATT	2 cut(s)	108, 261
TatI	WGTACW	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	107, 396
Tru9I	TTAA	2 cut(s)	107, 396
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	15
ZraI	GACGTC	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.