Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015313

Physical Location & Seq

Genomic Coordinates Forward (+)

7806739 .. 7808937

Gene Structure 2199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG101100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGGACTTTGCCAGGGTTCAGAAGGAGCTTCAAGAATGCAGCAGAGACATAGAGCGCTCTGGTATCAAAGTCGTCCCCAAAAGCGATGCTAATCTCGCCTGTTTACTTGGCACCATACCCGGCCCAATTGGTACCCCTTATGAAGGTGGCACTTTTCAGATCGACATCTCCTTACCAGATGCTTATCCTTTTGAGCCTCCCAAAATGCAGTTCACAACCAAAGTTTGGCACCCTAATATCAGCAGTCAAAGTGGAGCAATTTGTCTGGATATCTTGAAGGACCAATGGAGCCCAGCTCTCACATTGAAAACAGCACTTCTTTCTGTACAAGCATTACTCTCTGCCCCTCAACCCGATGATCCTCAAGATGCCGTGGTGGCACAACAGTATCTGAGAGACTATCAGACCTTTGTTGGCACAGCTCGATACTGGACAGAATCCTTTGCCAAGTCATCATCGATTGGGATTGATGAAAAGGTAAAAAGACTTGTAGAGATGGGCTTCCCTGAAGGTCGGGCAAGGAGTGCTTTGGAAACTGTTGGTGGGGATGAAAACTTGGCCCTTGAAACTCTTTGCTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UBA UQ_con

Protein Analysis

195

Amino Acids

21.31

Weight (kDa)

4.77

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	6 - 145	1.3e-44	Ubiquitin-conjugating enzyme
UBA	PF00627	159 - 192	9.5e-07	UBA/TS-N domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50870
fragaria_vesca	FvH4_5g09050
malus_domestica	MD06G1134200.v1.1 MD14G1150500.v1.1
prunus_persica	Prupe.5G145200_v2.0.a1
pyrus_communis	pycom06g12530 pycom14g12500
rosa_chinensis	RchiOBHm_Chr7g0189161
rosa_laevigata	RLG00000004627
rosa_multiflora	Rmu_sc0007859.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265740
rosa_rugosa	Rorug06G0496300
rosa_samantha	Rh7AG101100 Rh7BG103700 Rh7CG105100
rosa_wichuraiana	Rw7G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	134
AccB1I	GGYRCC	3 cut(s)	113, 134, 231
AccB7I	CCANNNNNTGG	1 cut(s)	228
AclWI	GGATC	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	136, 330
AfeI	AGCGCT	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	146, 228
AgsI	TTSAA	4 cut(s)	35, 280, 310, 569
AjnI	CCWGG	1 cut(s)	14
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	3 cut(s)	31, 299, 425
AluI	AGCT	3 cut(s)	31, 299, 425
Alw26I	GTCTC	2 cut(s)	42, 393
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	394
Aor51HI	AGCGCT	1 cut(s)	59
AoxI	GGCC	2 cut(s)	124, 561
ApeKI	GCWGC	1 cut(s)	42
Asp718I	GGTACC	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	3 cut(s)	125, 283, 562
AsuC2I	CCSGG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BanI	GGYRCC	3 cut(s)	113, 134, 231
BanII	GRGCYC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	493
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	42, 393
BfoI	RGCGCY	1 cut(s)	61
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	2 cut(s)	16, 123
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	125, 283, 562
BmiI	GGNNCC	4 cut(s)	115, 136, 233, 293
BmrFI	CCNGG	2 cut(s)	16, 123
BmsI	GCATC	3 cut(s)	79, 172, 361
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpuEI	CTTGAG	1 cut(s)	351
BpuMI	CCSGG	1 cut(s)	123
Bsa29I	ATCGAT	1 cut(s)	461
BsaBI	GATNNNNATC	3 cut(s)	93, 167, 186
BsaJI	CCNNGG	2 cut(s)	15, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 228
Bse1I	ACTGG	1 cut(s)	437
Bse8I	GATNNNNATC	3 cut(s)	93, 167, 186
BseBI	CCWGG	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	15, 375
BseGI	GGATG	1 cut(s)	556
BseJI	GATNNNNATC	3 cut(s)	93, 167, 186
BseLI	CCNNNNNNNGG	2 cut(s)	146, 228
BseMII	CTCAG	1 cut(s)	386
BseNI	ACTGG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	54
BseYI	CCCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	126, 563
BshNI	GGYRCC	3 cut(s)	113, 134, 231
BshVI	ATCGAT	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	2 cut(s)	146, 228
BsmAI	GTCTC	2 cut(s)	42, 393
BsmFI	GGGAC	1 cut(s)	62
BsmI	GAATGC	1 cut(s)	44
BsnI	GGCC	2 cut(s)	126, 563
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp1407I	TGTACA	1 cut(s)	328
Bsp143I	GATC	2 cut(s)	162, 361
BspANI	GGCC	2 cut(s)	126, 563
BspCNI	CTCAG	1 cut(s)	387
BspDI	ATCGAT	1 cut(s)	461
BspLI	GGNNCC	4 cut(s)	115, 136, 233, 293
BspPI	GGATC	1 cut(s)	356
BspT107I	GGYRCC	3 cut(s)	113, 134, 231
BsrGI	TGTACA	1 cut(s)	328
BsrI	ACTGG	1 cut(s)	437
BssECI	CCNNGG	2 cut(s)	15, 375
BssMI	GATC	2 cut(s)	162, 361
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	2 cut(s)	390, 541
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstAUI	TGTACA	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	395
BstDSI	CCRYGG	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	165, 364
BstMAI	GTCTC	2 cut(s)	42, 393
BstMBI	GATC	2 cut(s)	162, 361
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 380, 527
BstNI	CCWGG	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	14, 121
BstV1I	GCAGC	1 cut(s)	54
Bsu15I	ATCGAT	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	126, 563
BsuTUI	ATCGAT	1 cut(s)	461
BtgI	CCRYGG	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	556
CaiI	CAGNNNCTG	1 cut(s)	394
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	3 cut(s)	125, 283, 562
ClaI	ATCGAT	1 cut(s)	461
Csp6I	GTAC	2 cut(s)	135, 329
CviJI	RGCY	8 cut(s)	31, 126, 199, 294, 299, 425, 504, 563
CviKI_1	RGCY	8 cut(s)	31, 126, 199, 294, 299, 425, 504, 563
CviQI	GTAC	2 cut(s)	135, 329
DdeI	CTNAG	1 cut(s)	395
DpnI	GATC	2 cut(s)	164, 363
DpnII	GATC	2 cut(s)	162, 361
Eco24I	GRGCYC	1 cut(s)	296
Eco32I	GATATC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	283
Eco47III	AGCGCT	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	296
FaiI	YATR	3 cut(s)	53, 119, 144
FalI	AAGNNNNNCTT	2 cut(s)	514, 546
FaqI	GGGAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	43
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	126, 563
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	60
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	440
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	3 cut(s)	7, 107, 216
Hpy188I	TCNGA	4 cut(s)	24, 162, 396, 408
Hpy188III	TCNNGA	4 cut(s)	35, 269, 277, 368
Hpy8I	GTNNAC	3 cut(s)	7, 107, 216
HpyAV	CCTTC	4 cut(s)	19, 140, 274, 506
HpyCH4III	ACNGT	2 cut(s)	390, 541
HpyCH4V	TGCA	2 cut(s)	42, 211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 380, 527
HpyF3I	CTNAG	1 cut(s)	395
HspAI	GCGC	1 cut(s)	58
KpnI	GGTACC	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	162, 361
LmnI	GCTCC	3 cut(s)	28, 257, 291
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	3 cut(s)	79, 172, 361
MalI	GATC	2 cut(s)	164, 363
MboI	GATC	2 cut(s)	162, 361
MfeI	CAATTG	1 cut(s)	129
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	2 cut(s)	129, 261
MnlI	CCTC	3 cut(s)	210, 360, 375
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	16, 123
MunI	CAATTG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	98, 380, 527
NciI	CCSGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	162, 361
NlaIV	GGNNCC	4 cut(s)	115, 136, 233, 293
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	228
PkrI	GCNGC	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	4 cut(s)	115, 136, 233, 293
PspPI	GGNCC	3 cut(s)	125, 283, 562
PstNI	CAGNNNCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	136, 330
RsaNI	GTAC	2 cut(s)	135, 329
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	2 cut(s)	162, 361
Sau96I	GGNCC	3 cut(s)	125, 283, 562
ScrFI	CCNGG	2 cut(s)	16, 123
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	7 cut(s)	33, 151, 301, 413, 427, 483, 517
SfaNI	GCATC	3 cut(s)	79, 172, 361
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	129, 261
StyD4I	CCNGG	2 cut(s)	14, 121
TaaI	ACNGT	2 cut(s)	390, 541
TaqI	TCGA	3 cut(s)	165, 427, 461
TasI	AATT	2 cut(s)	129, 261
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	3 cut(s)	159, 489, 567
Van91I	CCANNNNNTGG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.