Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015313

Physical Location & Seq

Genomic Coordinates Reverse (-)

61309186 .. 61310188

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0496300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGCGACACCGCAAAGAGACGGCAGCGAGACTGGACGGAGCTCCCTGACATCGCCACGGAGTCGATACTGTCGCGGCTGGGCGCCATTGACATGTTGGAGAGCGCTCAGAAGGTTTGCATGAAATGGCGCAAAATCTATGAGAACAACACTCGGATTTGGCGCACCGTCGACATGAGAAATGATGGTGATTTTCCATACGACCTGGAGATTATGTGCTTCCACGCCGTTGATCGCAGCCGCGGTGAGCTCGTCGATATTAACATCGAGCACTTCGGCACCGATGAGCTGCTTCACTATATCACTGACAGATCAAGGGGAATCAGGCGCCTCCGACTATTGAATTGCAATGGAGTATCAAGTGAGGGATTGGCTGAAGTGGCTCTGAAACTTCCGTTGTTGGAGGAACTTGACATTACTCTATGCGCTAACATCTCACATGAAGCTATAAGAGTGGTTGGGCAGTCTTGCCCTCTTTTGAAATCATTCAAGTTAAACAAAGAGTGGTGTAGATTATCTGGACATGAGCCTTACGCGTATTGTACATACATGTACATTTGCAAGCATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UBA UQ_con

Protein Analysis

190

Amino Acids

22.08

Weight (kDa)

6.31

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50870
fragaria_vesca	FvH4_5g09050
malus_domestica	MD06G1134200.v1.1 MD14G1150500.v1.1
prunus_persica	Prupe.5G145200_v2.0.a1
pyrus_communis	pycom06g12530 pycom14g12500
rosa_chinensis	RchiOBHm_Chr7g0189161
rosa_laevigata	RLG00000004627
rosa_multiflora	Rmu_sc0007859.1_g000011
rosa_roxburghii	Rroxscaffold_3G00265740
rosa_rugosa	Rorug06G0496300
rosa_samantha	Rh7AG101100 Rh7BG103700 Rh7CG105100
rosa_wichuraiana	Rw7G008730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	83, 278, 327
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	3 cut(s)	76, 243, 536
AciI	CCGC	4 cut(s)	12, 76, 241, 243
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	2 cut(s)	84, 328
AfaI	GTAC	2 cut(s)	544, 554
AfeI	AGCGCT	1 cut(s)	106
AflIII	ACRYGT	3 cut(s)	93, 534, 549
AgsI	TTSAA	3 cut(s)	343, 481, 490
AjnI	CCWGG	1 cut(s)	204
AluBI	AGCT	4 cut(s)	43, 250, 289, 446
AluI	AGCT	4 cut(s)	43, 250, 289, 446
Alw21I	GWGCWC	3 cut(s)	45, 252, 273
Alw26I	GTCTC	2 cut(s)	13, 24
Aor51HI	AGCGCT	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	25, 237, 289
Asp700I	GAANNNNTTC	1 cut(s)	485
AspLEI	GCGC	6 cut(s)	86, 107, 132, 165, 330, 428
AsuHPI	GGTGA	2 cut(s)	200, 257
BanI	GGYRCC	3 cut(s)	83, 278, 327
BanII	GRGCYC	2 cut(s)	45, 252
Bbv12I	GWGCWC	3 cut(s)	45, 252, 273
BbvI	GCAGC	3 cut(s)	37, 249, 276
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	38, 212
BciT130I	CCWGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	13, 24
BfoI	RGCGCY	3 cut(s)	87, 108, 331
BisI	GCNGC	5 cut(s)	26, 77, 238, 241, 290
BlsI	GCNGC	5 cut(s)	27, 78, 239, 242, 291
Bme1390I	CCNGG	1 cut(s)	206
BmiI	GGNNCC	3 cut(s)	85, 280, 329
BmrFI	CCNGG	1 cut(s)	206
BpmI	CTGGAG	1 cut(s)	227
BsaHI	GRCGYC	2 cut(s)	84, 328
BsaJI	CCNNGG	2 cut(s)	57, 241
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	1 cut(s)	206
BseDI	CCNNGG	2 cut(s)	57, 241
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	3 cut(s)	37, 249, 276
BseYI	CCCAGC	1 cut(s)	79
Bsh1236I	CGCG	3 cut(s)	76, 243, 536
BshNI	GGYRCC	3 cut(s)	83, 278, 327
BsiHKAI	GWGCWC	3 cut(s)	45, 252, 273
BsmAI	GTCTC	2 cut(s)	13, 24
BsmBI	CGTCTC	1 cut(s)	13
Bsp1286I	GDGCHC	3 cut(s)	45, 252, 273
Bsp1407I	TGTACA	2 cut(s)	542, 552
Bsp143I	GATC	2 cut(s)	232, 311
BspACI	CCGC	4 cut(s)	12, 76, 241, 243
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	3 cut(s)	76, 243, 536
BspLI	GGNNCC	3 cut(s)	85, 280, 329
BspT107I	GGYRCC	3 cut(s)	83, 278, 327
BsrDI	GCAATG	1 cut(s)	355
BsrGI	TGTACA	2 cut(s)	542, 552
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	57, 241
BssMI	GATC	2 cut(s)	232, 311
BssNI	GRCGYC	2 cut(s)	84, 328
Bst2UI	CCWGG	1 cut(s)	206
Bst4CI	ACNGT	2 cut(s)	72, 169
BstACI	GRCGYC	2 cut(s)	84, 328
BstAUI	TGTACA	2 cut(s)	542, 552
BstC8I	GCNNGC	1 cut(s)	563
BstDEI	CTNAG	1 cut(s)	108
BstDSI	CCRYGG	2 cut(s)	57, 241
BstFNI	CGCG	3 cut(s)	76, 243, 536
BstH2I	RGCGCY	3 cut(s)	87, 108, 331
BstHHI	GCGC	6 cut(s)	86, 107, 132, 165, 330, 428
BstKTI	GATC	2 cut(s)	235, 314
BstMAI	GTCTC	2 cut(s)	13, 24
BstMBI	GATC	2 cut(s)	232, 311
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	206
BstNSI	RCATGY	2 cut(s)	97, 553
BstSCI	CCNGG	1 cut(s)	204
BstUI	CGCG	3 cut(s)	76, 243, 536
BstV1I	GCAGC	3 cut(s)	37, 249, 276
BtgI	CCRYGG	2 cut(s)	57, 241
BtgZI	GCGATG	1 cut(s)	37
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	563
CfoI	GCGC	6 cut(s)	86, 107, 132, 165, 330, 428
Cfr42I	CCGCGG	1 cut(s)	244
Csp6I	GTAC	2 cut(s)	543, 553
CviAII	CATG	6 cut(s)	94, 121, 175, 440, 524, 550
CviJI	RGCY	9 cut(s)	43, 79, 240, 250, 289, 374, 383, 446, 529
CviKI_1	RGCY	9 cut(s)	43, 79, 240, 250, 289, 374, 383, 446, 529
CviQI	GTAC	2 cut(s)	543, 553
DdeI	CTNAG	1 cut(s)	108
DinI	GGCGCC	2 cut(s)	85, 329
DpnI	GATC	2 cut(s)	234, 313
DpnII	GATC	2 cut(s)	232, 311
Ecl136II	GAGCTC	2 cut(s)	43, 250
Eco24I	GRGCYC	2 cut(s)	45, 252
Eco47III	AGCGCT	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	43, 250
Eco57I	CTGAAG	1 cut(s)	396
EcoICRI	GAGCTC	2 cut(s)	43, 250
EcoRII	CCWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	45, 252
EgeI	GGCGCC	2 cut(s)	85, 329
EheI	GGCGCC	2 cut(s)	85, 329
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	6 cut(s)	97, 124, 178, 443, 527, 553
FatI	CATG	6 cut(s)	93, 120, 174, 439, 523, 549
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	26, 77, 238, 241, 290
FriOI	GRGCYC	2 cut(s)	45, 252
Fsp4HI	GCNGC	5 cut(s)	26, 77, 238, 241, 290
GlaI	GCGC	6 cut(s)	85, 106, 131, 164, 329, 427
GluI	GCNGC	5 cut(s)	26, 77, 238, 241, 290
GsaI	CCCAGC	1 cut(s)	83
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	3 cut(s)	87, 108, 331
HhaI	GCGC	6 cut(s)	86, 107, 132, 165, 330, 428
Hin1I	GRCGYC	2 cut(s)	84, 328
Hin1II	CATG	6 cut(s)	97, 124, 178, 443, 527, 553
Hin6I	GCGC	6 cut(s)	84, 105, 130, 163, 328, 426
HinP1I	GCGC	6 cut(s)	84, 105, 130, 163, 328, 426
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	62, 321
HphI	GGTGA	2 cut(s)	200, 257
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	4 cut(s)	111, 156, 335, 387
Hpy188III	TCNNGA	1 cut(s)	519
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	2 cut(s)	173, 257
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	2 cut(s)	72, 169
HpyCH4V	TGCA	3 cut(s)	120, 348, 561
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	1 cut(s)	108
Hsp92I	GRCGYC	2 cut(s)	84, 328
Hsp92II	CATG	6 cut(s)	97, 124, 178, 443, 527, 553
HspAI	GCGC	6 cut(s)	84, 105, 130, 163, 328, 426
KasI	GGCGCC	2 cut(s)	83, 327
KspI	CCGCGG	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	232, 311
LmnI	GCTCC	2 cut(s)	40, 48
LpnPI	CCDG	7 cut(s)	19, 60, 65, 191, 218, 310, 504
Lsp1109I	GCAGC	3 cut(s)	37, 249, 276
MalI	GATC	2 cut(s)	234, 313
MboI	GATC	2 cut(s)	232, 311
MhlI	GDGCHC	3 cut(s)	45, 252, 273
MluCI	AATT	2 cut(s)	343, 568
MluI	ACGCGT	1 cut(s)	534
Mly113I	GGCGCC	2 cut(s)	84, 328
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	3 cut(s)	78, 358, 381
MnlI	CCTC	4 cut(s)	341, 358, 397, 483
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	261, 494
MslI	CAYNNNNRTG	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	243
MspR9I	CCNGG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	206
MvnI	CGCG	3 cut(s)	76, 243, 536
MwoI	GCNNNNNNNGC	1 cut(s)	380
NarI	GGCGCC	2 cut(s)	84, 328
NdeII	GATC	2 cut(s)	232, 311
NlaIII	CATG	6 cut(s)	97, 124, 178, 443, 527, 553
NlaIV	GGNNCC	3 cut(s)	85, 280, 329
NspI	RCATGY	2 cut(s)	97, 553
PciI	ACATGT	2 cut(s)	93, 549
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	27, 78, 239, 242, 291
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	2 cut(s)	87, 331
PpsI	GAGTC	1 cut(s)	70
PscI	ACATGT	2 cut(s)	93, 549
Psp124BI	GAGCTC	2 cut(s)	45, 252
Psp6I	CCWGG	1 cut(s)	204
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	204
PspN4I	GGNNCC	3 cut(s)	85, 280, 329
RsaI	GTAC	2 cut(s)	544, 554
RsaNI	GTAC	2 cut(s)	543, 553
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	2 cut(s)	45, 252
SacII	CCGCGG	1 cut(s)	244
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	261, 494
SatI	GCNGC	5 cut(s)	26, 77, 238, 241, 290
Sau3AI	GATC	2 cut(s)	232, 311
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	3 cut(s)	45, 252, 273
SetI	ASST	6 cut(s)	45, 117, 207, 252, 291, 448
SfoI	GGCGCC	2 cut(s)	85, 329
Sfr303I	CCGCGG	1 cut(s)	244
SgrBI	CCGCGG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	2 cut(s)	343, 568
SsiI	CCGC	4 cut(s)	12, 76, 241, 243
SspDI	GGCGCC	2 cut(s)	83, 327
SstI	GAGCTC	2 cut(s)	45, 252
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	72, 169
TaqI	TCGA	4 cut(s)	65, 171, 255, 267
TasI	AATT	2 cut(s)	343, 568
TatI	WGTACW	2 cut(s)	542, 552
TauI	GCSGC	2 cut(s)	79, 243
TfiI	GAWTC	1 cut(s)	321
Tru1I	TTAA	2 cut(s)	261, 494
Tru9I	TTAA	2 cut(s)	261, 494
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	3 cut(s)	25, 237, 289
TspDTI	ATGAA	2 cut(s)	137, 456
TspGWI	ACGGA	3 cut(s)	53, 74, 384
TspRI	CASTG	1 cut(s)	310
XceI	RCATGY	2 cut(s)	97, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.