FvH4_5g12150

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
6852249 .. 6854527
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12150.t1

Sequence Viewer

Length: 1374 bp
ATGATCACCGAAAAGAAAGCAGCTAATGCCATGGGAGGCAACACGGCGCGAGCCTGCGACAGCTGCTTGGTGAAGCGGGCTCGGTGGTTTTGTGGAGCTGATGATGCTTTTCTTTGCCAGAGGTGCGATGCTTCTGTACACTCGGCGAACCTCTTGGCCAGCAGACACGAGAGGGTCCGTCTCAAGTCTTCATCTCACAAGGTCAGTGATCACTTGGCAATTGAACCTCCGGTCCCAGCTTGGCAGCAGGGCGTGACGCGCAAGGCACGGACTCCCCGAGGCCATGGGAATCATAAGAGCGGCAAAGATGAAGCGGGGAAGGCTCTAGGGCAGTCTATGCCTTTTGTGCCGGAGATTGGGAGTGAAGAAGTTGACTACTGTTGCCTAGAGGATGATCATGAGAGTGAAGATCTTGAGCAGCTGCTTTATAGAGTCCCCATATTTGATCCTTTTGAAGGTGAGCTTTGCAATAACATGACAAATATTGATCATCATAAGGTAAAAATGGGTCATGAAGATTATGGAGCTCGGACTAGTAGCACTAGCCCCTGCGACGAGTTGGATAACTTTCAGGGGCTAATTCTACCTTCGGATATGGAGCTCGCGGAGTTTGCTGCTGATGTTGAGAACATGCTTGGGAAGGGACTTGATGAGGACTGCAGTGACATCAAGGGGTTGGGACTACTGGATGAAACGAAAGAAGAAGAGGACTATGGCATGGATGTTTGTATTGGCATTGAAGAGAGGAAGCTAGTGAAGATTGAAGAGGAAGATCAAGGAATGGAATGTGAATTCAATCCTTCAATGCTGGATTGGAACTTGGATTATGATGATGAGTCAGCTGCGGTGTTGCTTGGGGGAAGTACTAGTACTGATCAGGAGGAGGAGGACAAGGTAGCGGTGCTCATGGAGGCTGAGAAGAAGAGGAAGAAGATATGTTTGAGGCTGAATCATGAGGCAGTCATCAGTGCCTGGGCAAGCAAAGGCTCTCCGTGGACCACCGGAGTTAAGCCGGAGCTCAACCCCGACGATGGCTGGCCCGACTGCATGGGCGTATGGGGCACAAATCAGATTATGAATTTGCAAGGACATGGAGATAGTAGTGCAGCAGCTCACAGGATGGGAATGAGAGGCGATACTGAGCAGCGGCCAGGAAGAGAAGCAAGAGTATCAAGGTACAGAGAGAAACGGAGGACACGATTGTTTTCAAAGAAGATTAGATACGAAGTGAGGAAGCTCAACGCAGAGAAGAGGCCTAGAATGAAAGGTCGATTCGTTAAGAGAACCTCGTTCCAGACGGGAATGGGGACTAGTTCTACTACTACGGCTTCGAATGCACCTCACTACCAGCAGCAGCAGCACCTCAAAAAATAA

Protein Analysis

458

Amino Acids

51.23

Weight (kDa)

5.56

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 16 - 59 3e-06 B-box zinc finger
CCT PF06203 386 - 428 4.7e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015626)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 300
AccII CGCG 3 cut(s) 49, 259, 605
AciI CCGC 7 cut(s) 76, 300, 314, 605, 845, 899, 1147
AclWI GGATC 1 cut(s) 440
AcoI YGGCCR 2 cut(s) 156, 1148
AcsI RAATTY 2 cut(s) 791, 1078
AfaI GTAC 4 cut(s) 138, 865, 871, 1178
AfiI CCNNNNNNNGG 3 cut(s) 356, 455, 1031
AgsI TTSAA 7 cut(s) 224, 455, 740, 764, 796, 804, 1209
AhlI ACTAGT 3 cut(s) 533, 866, 1310
AjnI CCWGG 2 cut(s) 971, 1150
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
Alw21I GWGCWC 4 cut(s) 529, 603, 906, 1020
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 1 cut(s) 440
AlwNI CAGNNNCTG 1 cut(s) 972
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 5 cut(s) 156, 280, 1037, 1148, 1253
ApoI RAATTY 2 cut(s) 791, 1078
AspLEI GCGC 2 cut(s) 49, 261
AspS9I GGNCC 4 cut(s) 175, 232, 996, 1038
AsuHPI GGTGA 2 cut(s) 82, 470
AsuII TTCGAA 1 cut(s) 1331
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 3 cut(s) 175, 232, 996
BaeGI GKGCMC 1 cut(s) 1064
BalI TGGCCA 1 cut(s) 158
BanII GRGCYC 4 cut(s) 82, 529, 603, 1020
BarI GAAGNNNNNNTAC 4 cut(s) 853, 885, 1205, 1237
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 4 cut(s) 529, 603, 906, 1020
BccI CCATC 2 cut(s) 1025, 1114
BceAI ACGGC 2 cut(s) 60, 1341
BciT130I CCWGG 2 cut(s) 973, 1152
BclI TGATCA 5 cut(s) 3, 208, 394, 487, 874
BcoDI GTCTC 1 cut(s) 185
BcuI ACTAGT 3 cut(s) 533, 866, 1310
BfaI CTAG 8 cut(s) 326, 386, 534, 543, 752, 867, 1257, 1311
BfmI CTRYAG 1 cut(s) 658
BglII AGATCT 1 cut(s) 409
BmcAI AGTACT 2 cut(s) 865, 871
Bme1390I CCNGG 2 cut(s) 973, 1152
Bme18I GGWCC 3 cut(s) 175, 232, 996
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 4 cut(s) 175, 232, 996, 1038
BmiI GGNNCC 2 cut(s) 176, 234
BmrFI CCNGG 2 cut(s) 973, 1152
BmsI GCATC 2 cut(s) 94, 118
BpiI GAAGAC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 1331
BpuEI CTTGAG 2 cut(s) 167, 434
BsaJI CCNNGG 5 cut(s) 30, 277, 283, 972, 992
BsaWI WCCGGW 2 cut(s) 229, 1001
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 455, 1031
Bse1I ACTGG 1 cut(s) 690
BseBI CCWGG 2 cut(s) 973, 1152
BseDI CCNNGG 5 cut(s) 30, 277, 283, 972, 992
BseGI GGATG 4 cut(s) 397, 694, 727, 1125
BseLI CCNNNNNNNGG 3 cut(s) 356, 455, 1031
BseMII CTCAG 2 cut(s) 906, 1131
BseNI ACTGG 1 cut(s) 690
BseRI GAGGAG 2 cut(s) 896, 899
BseSI GKGCMC 1 cut(s) 1064
BseYI CCCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 1125
Bsh1236I CGCG 3 cut(s) 49, 259, 605
BshFI GGCC 5 cut(s) 158, 282, 1039, 1150, 1255
BsiHKAI GWGCWC 4 cut(s) 529, 603, 906, 1020
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 4 cut(s) 230, 350, 1002, 1013
BslFI GGGAC 5 cut(s) 218, 419, 657, 693, 1321
BslI CCNNNNNNNGG 3 cut(s) 356, 455, 1031
BsmAI GTCTC 1 cut(s) 185
BsmBI CGTCTC 1 cut(s) 185
BsmFI GGGAC 5 cut(s) 218, 419, 657, 693, 1321
BsmI GAATGC 1 cut(s) 1339
BsnI GGCC 5 cut(s) 158, 282, 1039, 1150, 1255
BsoBI CYCGRG 1 cut(s) 276
Bsp119I TTCGAA 1 cut(s) 1331
Bsp1286I GDGCHC 6 cut(s) 82, 529, 603, 906, 1020, 1064
Bsp1407I TGTACA 1 cut(s) 136
Bsp143I GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
Bsp19I CCATGG 2 cut(s) 30, 283
BspACI CCGC 7 cut(s) 76, 300, 314, 605, 845, 899, 1147
BspANI GGCC 5 cut(s) 158, 282, 1039, 1150, 1255
BspCNI CTCAG 2 cut(s) 907, 1132
BspFNI CGCG 3 cut(s) 49, 259, 605
BspHI TCATGA 3 cut(s) 397, 511, 952
BspLI GGNNCC 2 cut(s) 176, 234
BspMAI CTGCAG 1 cut(s) 662
BspPI GGATC 1 cut(s) 440
BspT104I TTCGAA 1 cut(s) 1331
BsrBI CCGCTC 1 cut(s) 300
BsrGI TGTACA 1 cut(s) 136
BsrI ACTGG 1 cut(s) 690
BssECI CCNNGG 5 cut(s) 30, 277, 283, 972, 992
BssMI GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 2 cut(s) 30, 283
Bst2BI CACGAG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 973, 1152
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 6 cut(s) 699, 735, 759, 917, 1150, 1244
BstAPI GCANNNNNTGC 2 cut(s) 26, 337
BstAUI TGTACA 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 1331
BstC8I GCNNGC 7 cut(s) 51, 55, 78, 160, 603, 979, 1037
BstDEI CTNAG 2 cut(s) 915, 1140
BstDSI CCRYGG 3 cut(s) 30, 283, 992
BstENI CCTNNNNNAGG 1 cut(s) 453
BstF5I GGATG 4 cut(s) 397, 694, 727, 1125
BstFNI CGCG 3 cut(s) 49, 259, 605
BstHHI GCGC 2 cut(s) 49, 261
BstKTI GATC 8 cut(s) 6, 211, 397, 412, 448, 490, 775, 877
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
BstNI CCWGG 2 cut(s) 973, 1152
BstNSI RCATGY 1 cut(s) 634
BstSCI CCNGG 2 cut(s) 971, 1150
BstSFI CTRYAG 1 cut(s) 658
BstSLI GKGCMC 1 cut(s) 1064
BstUI CGCG 3 cut(s) 49, 259, 605
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuRI GGCC 5 cut(s) 158, 282, 1039, 1150, 1255
BtgI CCRYGG 3 cut(s) 30, 283, 992
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 4 cut(s) 397, 694, 727, 1125
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 3 cut(s) 211, 667, 973
Cac8I GCNNGC 7 cut(s) 51, 55, 78, 160, 603, 979, 1037
CaiI CAGNNNCTG 1 cut(s) 972
CciI TCATGA 3 cut(s) 397, 511, 952
CfoI GCGC 2 cut(s) 49, 261
Cfr13I GGNCC 4 cut(s) 175, 232, 996, 1038
CseI GACGC 1 cut(s) 265
Csp6I GTAC 4 cut(s) 137, 864, 870, 1177
CviQI GTAC 4 cut(s) 137, 864, 870, 1177
DdeI CTNAG 2 cut(s) 915, 1140
DpnI GATC 8 cut(s) 5, 210, 396, 411, 447, 489, 774, 876
DpnII GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
EaeI YGGCCR 2 cut(s) 156, 1148
Eam1104I CTCTTC 6 cut(s) 699, 735, 759, 917, 1150, 1244
EarI CTCTTC 6 cut(s) 699, 735, 759, 917, 1150, 1244
Ecl136II GAGCTC 3 cut(s) 527, 601, 1018
Eco130I CCWWGG 2 cut(s) 30, 283
Eco147I AGGCCT 1 cut(s) 1255
Eco24I GRGCYC 4 cut(s) 82, 529, 603, 1020
Eco47I GGWCC 3 cut(s) 175, 232, 996
Eco53kI GAGCTC 3 cut(s) 527, 601, 1018
Eco88I CYCGRG 1 cut(s) 276
EcoICRI GAGCTC 3 cut(s) 527, 601, 1018
EcoNI CCTNNNNNAGG 1 cut(s) 453
EcoRI GAATTC 1 cut(s) 791
EcoRII CCWGG 2 cut(s) 971, 1150
EcoT14I CCWWGG 2 cut(s) 30, 283
EcoT38I GRGCYC 4 cut(s) 82, 529, 603, 1020
ErhI CCWWGG 2 cut(s) 30, 283
Esp3I CGTCTC 1 cut(s) 185
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 5 cut(s) 218, 419, 657, 693, 1321
FauI CCCGC 2 cut(s) 69, 307
FbaI TGATCA 5 cut(s) 3, 208, 394, 487, 874
FokI GGATG 4 cut(s) 404, 701, 734, 1132
FriOI GRGCYC 4 cut(s) 82, 529, 603, 1020
FspBI CTAG 8 cut(s) 326, 386, 534, 543, 752, 867, 1257, 1311
GlaI GCGC 2 cut(s) 48, 260
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 5 cut(s) 158, 282, 1039, 1150, 1255
HapII CCGG 4 cut(s) 230, 350, 1002, 1013
HgaI GACGC 1 cut(s) 265
HhaI GCGC 2 cut(s) 49, 261
Hin6I GCGC 2 cut(s) 47, 259
HinP1I GCGC 2 cut(s) 47, 259
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 6 cut(s) 271, 289, 432, 836, 949, 1272
HpaII CCGG 4 cut(s) 230, 350, 1002, 1013
HphI GGTGA 2 cut(s) 82, 470
Hpy166II GTNNAC 3 cut(s) 139, 373, 996
Hpy188I TCNGA 3 cut(s) 531, 592, 1071
Hpy188III TCNNGA 6 cut(s) 398, 413, 512, 878, 953, 1294
Hpy8I GTNNAC 3 cut(s) 139, 373, 996
Hpy99I CGWCG 2 cut(s) 557, 1031
HpyAV CCTTC 5 cut(s) 313, 449, 597, 634, 810
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 6 cut(s) 468, 660, 1047, 1084, 1106, 1337
HpyF3I CTNAG 2 cut(s) 915, 1140
HspAI GCGC 2 cut(s) 47, 259
Ksp22I TGATCA 5 cut(s) 3, 208, 394, 487, 874
Kzo9I GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
LmnI GCTCC 4 cut(s) 95, 524, 598, 1015
LweI GCATC 2 cut(s) 94, 118
MaeI CTAG 8 cut(s) 326, 386, 534, 543, 752, 867, 1257, 1311
MaeIII GTNAC 2 cut(s) 253, 662
MalI GATC 8 cut(s) 5, 210, 396, 411, 447, 489, 774, 876
MbiI CCGCTC 1 cut(s) 300
MboI GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 6 cut(s) 82, 529, 603, 906, 1020, 1064
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 4 cut(s) 219, 579, 791, 1078
MluNI TGGCCA 1 cut(s) 158
MlyI GAGTC 3 cut(s) 265, 441, 845
MmeI TCCRAC 1 cut(s) 540
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MseI TTAA 2 cut(s) 1008, 1278
MslI CAYNNNNRTG 1 cut(s) 402
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 4 cut(s) 63, 421, 842, 1147
MspI CCGG 4 cut(s) 230, 350, 1002, 1013
MspR9I CCNGG 2 cut(s) 973, 1152
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 1339
MvaI CCWGG 2 cut(s) 973, 1152
MvnI CGCG 3 cut(s) 49, 259, 605
NcoI CCATGG 2 cut(s) 30, 283
NdeII GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
NlaIV GGNNCC 2 cut(s) 176, 234
NmeAIII GCCGAG 1 cut(s) 122
NmuCI GTSAC 2 cut(s) 253, 662
NspI RCATGY 1 cut(s) 634
NspV TTCGAA 1 cut(s) 1331
PagI TCATGA 3 cut(s) 397, 511, 952
PceI AGGCCT 1 cut(s) 1255
PcsI WCGNNNNNNNCGW 2 cut(s) 274, 1195
PctI GAATGC 1 cut(s) 1339
PfeI GAWTC 3 cut(s) 289, 949, 1272
PleI GAGTC 3 cut(s) 265, 440, 844
PpsI GAGTC 3 cut(s) 265, 440, 844
Psp124BI GAGCTC 3 cut(s) 529, 603, 1020
Psp6I CCWGG 2 cut(s) 971, 1150
PspFI CCCAGC 1 cut(s) 235
PspGI CCWGG 2 cut(s) 971, 1150
PspN4I GGNNCC 2 cut(s) 176, 234
PspPI GGNCC 4 cut(s) 175, 232, 996, 1038
PstI CTGCAG 1 cut(s) 662
PstNI CAGNNNCTG 1 cut(s) 972
PsuI RGATCY 1 cut(s) 409
PvuII CAGCTG 3 cut(s) 63, 421, 842
RsaI GTAC 4 cut(s) 138, 865, 871, 1178
RsaNI GTAC 4 cut(s) 137, 864, 870, 1177
RseI CAYNNNNRTG 1 cut(s) 402
SacI GAGCTC 3 cut(s) 529, 603, 1020
SaqAI TTAA 2 cut(s) 1008, 1278
Sau3AI GATC 8 cut(s) 3, 208, 394, 409, 445, 487, 772, 874
Sau96I GGNCC 4 cut(s) 175, 232, 996, 1038
ScaI AGTACT 2 cut(s) 865, 871
SchI GAGTC 3 cut(s) 265, 441, 845
ScrFI CCNGG 2 cut(s) 973, 1152
SduI GDGCHC 6 cut(s) 82, 529, 603, 906, 1020, 1064
SfaNI GCATC 2 cut(s) 94, 118
SfcI CTRYAG 1 cut(s) 658
SfuI TTCGAA 1 cut(s) 1331
SinI GGWCC 3 cut(s) 175, 232, 996
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 2 cut(s) 182, 413
SmoI CTYRAG 2 cut(s) 182, 413
SpeI ACTAGT 3 cut(s) 533, 866, 1310
Sse9I AATT 4 cut(s) 219, 579, 791, 1078
SseBI AGGCCT 1 cut(s) 1255
SsiI CCGC 7 cut(s) 76, 300, 314, 605, 845, 899, 1147
SspI AATATT 1 cut(s) 484
SspMI CTAG 8 cut(s) 326, 386, 534, 543, 752, 867, 1257, 1311
SstI GAGCTC 3 cut(s) 529, 603, 1020
StuI AGGCCT 1 cut(s) 1255
StyD4I CCNGG 2 cut(s) 971, 1150
StyI CCWWGG 2 cut(s) 30, 283
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 1270, 1331
TasI AATT 4 cut(s) 219, 579, 791, 1078
TatI WGTACW 3 cut(s) 136, 863, 869
TauI GCSGC 2 cut(s) 303, 1150
TfiI GAWTC 3 cut(s) 289, 949, 1272
Tru1I TTAA 2 cut(s) 1008, 1278
Tru9I TTAA 2 cut(s) 1008, 1278
TscAI CASTG 3 cut(s) 211, 667, 973
TseFI GTSAC 2 cut(s) 253, 662
Tsp45I GTSAC 2 cut(s) 253, 662
TspDTI ATGAA 6 cut(s) 180, 324, 528, 705, 1091, 1277
TspGWI ACGGA 4 cut(s) 167, 283, 981, 1204
TspRI CASTG 3 cut(s) 211, 667, 973
VpaK11BI GGWCC 3 cut(s) 175, 232, 996
XagI CCTNNNNNAGG 1 cut(s) 453
XapI RAATTY 2 cut(s) 791, 1078
XceI RCATGY 1 cut(s) 634
XspI CTAG 8 cut(s) 326, 386, 534, 543, 752, 867, 1257, 1311
ZrmI AGTACT 2 cut(s) 865, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.