pycom06g19250

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
22696643 .. 22698336
1694 bp
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UTR
Exon/CDS
Intron
pycom06g19250.1

Sequence Viewer

Length: 1326 bp
ATGATCACGGATAAGAAAGCTGCAAATGCAATGGGAGGCAACACGGCTCAAGCTTGCGATAGCTGTTTGGTGAAACGGGCACGATGGTTTTGTGCTGCTGATGATGCTTTTCTTTGCCAAAGATGTGATGCCTCGGTGCACTCGGCGAACCAGTTAGCAAGCAGACACCAGAGGGTTCGGCTCCAAGGTTCATCTGTCAAGGCCAATGCGTCGGTGCAGCTGATTGTGGAGCAAGCTGCACCGGCTTGGCACAAGGGGTTCAAGCGCAAGGCACGAACCCCTCGCCACAACAAGAAGCCTGGATTCGCAGCCAAAGATGAGCAAGAGAAAGTAGGGCTACACCCTCCTCTACCTTTTGTTCCGGAAATCGGGTGCCAAGAAGCAAATTTGATGGAGGATGAGGAAAATGAAGATTTTGAGCGGCTTCATTATAGGGTTCCAATTTATGACCCTTTTGCGGCCGAGCTTTGCAATATTTCGTCAAGTGATCAGGTTGGGAACAATACTGGTGCTATTGGTCTCGATGACGAAGAGATTGAGATCAGAAATACGGGAAATGACTTGGACAATTTGGGAGGGTTTCTACGGTCGGATATGGAGCTGGCGGAGTTTGCTGCTGATGTGGAGAACCTGCTTGGAGGGGGACTAGATGAGGATTGTAGTGACATCAAAGGAGTCCTGGGGCTATTGGACGAGGGTAAAGAAGTGAAGGTTGAAGAGGAAGTTGAAGGGATAGAATTTAATCCTTCGATCTTGGATTGGAACTTGTATTACGATCAGTCATCAGCTGTACCGGTACTAATGGGAAGTGAGGAGGACAAGGAGGAAGAGGAGAAGGTAGTCGTGTTCATGGGGGCTCAGAGTAGTGATGAGATTGGATTCATGGAGAACAAGCAAATAGTGATGAAGAGGAAGAACATATGTTTGAAGCTAGATTATGAGGCAGTCATCACTGCCTGGGCAAGCCAAGGCTCTCCATGGACGACCGGAACTCGACCGGAGCTCAACCCTGACGAAGGCTGGCTAGACTGTATGGGTATGTGGCCTACAGAAATTCATCAAGCACATGGAGATTCAGCAGGATGTGTAAGTGGAAGAGGAGATGACCCGCGAAGAGAAGCAAGAGTTTCTAGGTACAGAGAGAAGCGAAGGACACGATTGTTTTCGAAGAAGATAAGATACGAAGTTAGGAAGCTGAACGCGGAGAAGCGGCCTAGAATGAAAGGTCGATTCGTTAAGAGGACAACGTCCAGCTTTGGTGGGGTGGGAAGTAGTAGTAGTAATGCTCCTGCGGCTGCATTTCCCTACCTCATGATCAATAAATAA

Protein Analysis

442

Amino Acids

49.07

Weight (kDa)

5.32

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 16 - 59 2.3e-06 B-box zinc finger
CCT PF06203 372 - 414 4.5e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015626)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 639
AccB1I GGYRCC 1 cut(s) 372
AccBSI CCGCTC 1 cut(s) 421
AccII CGCG 2 cut(s) 1111, 1202
AccIII TCCGGA 1 cut(s) 361
AciI CCGC 7 cut(s) 421, 458, 605, 1109, 1202, 1210, 1292
AcoI YGGCCR 1 cut(s) 459
AcsI RAATTY 3 cut(s) 385, 737, 1053
AfaI GTAC 3 cut(s) 792, 798, 1136
AfiI CCNNNNNNNGG 3 cut(s) 368, 457, 1016
AgeI ACCGGT 1 cut(s) 793
AgsI TTSAA 4 cut(s) 262, 716, 728, 928
AjnI CCWGG 3 cut(s) 298, 678, 956
Alw21I GWGCWC 2 cut(s) 141, 1005
Alw26I GTCTC 1 cut(s) 524
Alw44I GTGCAC 1 cut(s) 137
Aor13HI TCCGGA 1 cut(s) 361
AoxI GGCC 4 cut(s) 201, 459, 1043, 1211
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 7 cut(s) 20, 95, 217, 236, 308, 614, 1295
ApoI RAATTY 3 cut(s) 385, 737, 1053
AsiGI ACCGGT 1 cut(s) 793
AspLEI GCGC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 82
AsuII TTCGAA 1 cut(s) 1166
BaeGI GKGCMC 2 cut(s) 82, 141
BanI GGYRCC 1 cut(s) 372
BanII GRGCYC 2 cut(s) 859, 1005
BarI GAAGNNNNNNTAC 2 cut(s) 1163, 1195
Bbv12I GWGCWC 2 cut(s) 141, 1005
BbvI GCAGC 7 cut(s) 7, 82, 223, 229, 320, 601, 1282
BccI CCATC 2 cut(s) 78, 385
BceAI ACGGC 1 cut(s) 60
BciT130I CCWGG 3 cut(s) 300, 680, 958
BclI TGATCA 3 cut(s) 3, 487, 1314
BcoDI GTCTC 1 cut(s) 524
BfaI CTAG 5 cut(s) 647, 932, 1025, 1131, 1215
BfmI CTRYAG 1 cut(s) 1047
BfuAI ACCTGC 1 cut(s) 639
Bme1390I CCNGG 3 cut(s) 300, 680, 958
BmiI GGNNCC 3 cut(s) 182, 374, 438
BmrFI CCNGG 3 cut(s) 300, 680, 958
BmsI GCATC 2 cut(s) 94, 118
Bpu14I TTCGAA 1 cut(s) 1166
BpuEI CTTGAG 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 539
BsaI GGTCTC 1 cut(s) 524
BsaJI CCNNGG 6 cut(s) 132, 184, 679, 957, 967, 977
BsaWI WCCGGW 4 cut(s) 361, 793, 986, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 368, 457, 1016
Bse118I RCCGGY 2 cut(s) 241, 793
Bse1I ACTGG 2 cut(s) 151, 511
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 539
BseAI TCCGGA 1 cut(s) 361
BseBI CCWGG 3 cut(s) 300, 680, 958
BseDI CCNNGG 6 cut(s) 132, 184, 679, 957, 967, 977
BseGI GGATG 2 cut(s) 403, 1088
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 3 cut(s) 368, 457, 1016
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 872
BseNI ACTGG 2 cut(s) 151, 511
BseRI GAGGAG 4 cut(s) 336, 827, 845, 1113
BseSI GKGCMC 2 cut(s) 82, 141
BseX3I CGGCCG 1 cut(s) 459
BseXI GCAGC 7 cut(s) 7, 82, 223, 229, 320, 601, 1282
BsgI GTGCAG 2 cut(s) 222, 236
Bsh1236I CGCG 2 cut(s) 1111, 1202
Bsh1285I CGRYCG 4 cut(s) 462, 590, 987, 998
BshFI GGCC 4 cut(s) 203, 461, 1045, 1213
BshNI GGYRCC 1 cut(s) 372
BshTI ACCGGT 1 cut(s) 793
BsiEI CGRYCG 4 cut(s) 462, 590, 987, 998
BsiHKAI GWGCWC 2 cut(s) 141, 1005
BsiSI CCGG 5 cut(s) 242, 362, 794, 987, 998
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 3 cut(s) 368, 457, 1016
BsmAI GTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 657
BsnI GGCC 4 cut(s) 203, 461, 1045, 1213
Bso31I GGTCTC 1 cut(s) 524
Bsp119I TTCGAA 1 cut(s) 1166
Bsp1286I GDGCHC 4 cut(s) 82, 141, 859, 1005
Bsp13I TCCGGA 1 cut(s) 361
Bsp143I GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
Bsp19I CCATGG 1 cut(s) 977
BspACI CCGC 7 cut(s) 421, 458, 605, 1109, 1202, 1210, 1292
BspANI GGCC 4 cut(s) 203, 461, 1045, 1213
BspCNI CTCAG 1 cut(s) 871
BspEI TCCGGA 1 cut(s) 361
BspFNI CGCG 2 cut(s) 1111, 1202
BspHI TCATGA 1 cut(s) 1311
BspLI GGNNCC 3 cut(s) 182, 374, 438
BspMI ACCTGC 1 cut(s) 639
BspT104I TTCGAA 1 cut(s) 1166
BspT107I GGYRCC 1 cut(s) 372
BspTNI GGTCTC 1 cut(s) 524
BsrBI CCGCTC 1 cut(s) 421
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 2 cut(s) 241, 793
BsrI ACTGG 2 cut(s) 151, 511
BssAI RCCGGY 2 cut(s) 241, 793
BssECI CCNNGG 6 cut(s) 132, 184, 679, 957, 967, 977
BssMI GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
BssT1I CCWWGG 3 cut(s) 184, 967, 977
Bst2UI CCWGG 3 cut(s) 300, 680, 958
Bst4CI ACNGT 2 cut(s) 588, 1031
Bst6I CTCTTC 6 cut(s) 525, 711, 822, 902, 1090, 1108
BstBI TTCGAA 1 cut(s) 1166
BstC8I GCNNGC 6 cut(s) 55, 160, 234, 603, 964, 1022
BstDEI CTNAG 1 cut(s) 858
BstDSI CCRYGG 1 cut(s) 977
BstENI CCTNNNNNAGG 1 cut(s) 1014
BstF5I GGATG 2 cut(s) 403, 1088
BstFNI CGCG 2 cut(s) 1111, 1202
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 6 cut(s) 6, 490, 543, 753, 778, 1317
BstMAI GTCTC 1 cut(s) 524
BstMBI GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
BstMCI CGRYCG 4 cut(s) 462, 590, 987, 998
BstMWI GCNNNNNNNGC 5 cut(s) 26, 104, 242, 611, 1292
BstNI CCWGG 3 cut(s) 300, 680, 958
BstSCI CCNGG 3 cut(s) 298, 678, 956
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 2 cut(s) 82, 141
BstUI CGCG 2 cut(s) 1111, 1202
BstV1I GCAGC 7 cut(s) 7, 82, 223, 229, 320, 601, 1282
BstZI CGGCCG 1 cut(s) 459
BsuRI GGCC 4 cut(s) 203, 461, 1045, 1213
BtgI CCRYGG 1 cut(s) 977
BtsCI GGATG 2 cut(s) 403, 1088
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 1 cut(s) 951
BveI ACCTGC 1 cut(s) 639
Cac8I GCNNGC 6 cut(s) 55, 160, 234, 603, 964, 1022
CciI TCATGA 1 cut(s) 1311
CfoI GCGC 1 cut(s) 267
Cfr10I RCCGGY 2 cut(s) 241, 793
CseI GACGC 1 cut(s) 198
Csp6I GTAC 3 cut(s) 791, 797, 1135
CspAI ACCGGT 1 cut(s) 793
CviAII CATG 5 cut(s) 850, 883, 978, 1067, 1312
CviQI GTAC 3 cut(s) 791, 797, 1135
DdeI CTNAG 1 cut(s) 858
DpnI GATC 6 cut(s) 5, 489, 542, 752, 777, 1316
DpnII GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
EaeI YGGCCR 1 cut(s) 459
EagI CGGCCG 1 cut(s) 459
Eam1104I CTCTTC 6 cut(s) 525, 711, 822, 902, 1090, 1108
EarI CTCTTC 6 cut(s) 525, 711, 822, 902, 1090, 1108
EciI GGCGGA 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 1003
EclXI CGGCCG 1 cut(s) 459
Eco130I CCWWGG 3 cut(s) 184, 967, 977
Eco24I GRGCYC 2 cut(s) 859, 1005
Eco31I GGTCTC 1 cut(s) 524
Eco52I CGGCCG 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 1003
EcoICRI GAGCTC 1 cut(s) 1003
EcoNI CCTNNNNNAGG 1 cut(s) 1014
EcoRII CCWGG 3 cut(s) 298, 678, 956
EcoT14I CCWWGG 3 cut(s) 184, 967, 977
EcoT38I GRGCYC 2 cut(s) 859, 1005
ErhI CCWWGG 3 cut(s) 184, 967, 977
FaeI CATG 5 cut(s) 853, 886, 981, 1070, 1315
FaqI GGGAC 1 cut(s) 657
FatI CATG 5 cut(s) 849, 882, 977, 1066, 1311
FauI CCCGC 1 cut(s) 1116
FauNDI CATATG 1 cut(s) 920
FbaI TGATCA 3 cut(s) 3, 487, 1314
FokI GGATG 2 cut(s) 410, 1095
FriOI GRGCYC 2 cut(s) 859, 1005
FspBI CTAG 5 cut(s) 647, 932, 1025, 1131, 1215
GlaI GCGC 1 cut(s) 266
HaeIII GGCC 4 cut(s) 203, 461, 1045, 1213
HapII CCGG 5 cut(s) 242, 362, 794, 987, 998
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 267
Hin1II CATG 5 cut(s) 853, 886, 981, 1070, 1315
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 51
HinfI GANTC 5 cut(s) 303, 675, 879, 1073, 1230
HpaII CCGG 5 cut(s) 242, 362, 794, 987, 998
HphI GGTGA 1 cut(s) 82
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 545, 592, 861
Hpy188III TCNNGA 3 cut(s) 362, 521, 1312
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 6 cut(s) 703, 722, 756, 829, 1010, 1143
HpyCH4III ACNGT 2 cut(s) 588, 1031
HpyCH4IV ACGT 1 cut(s) 1247
HpyCH4V TGCA 7 cut(s) 23, 29, 139, 217, 239, 471, 1298
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 104, 242, 611, 1292
HpyF3I CTNAG 1 cut(s) 858
HpySE526I ACGT 1 cut(s) 1247
Hsp92II CATG 5 cut(s) 853, 886, 981, 1070, 1315
HspAI GCGC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 361
Ksp22I TGATCA 3 cut(s) 3, 487, 1314
Kzo9I GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
LmnI GCTCC 5 cut(s) 186, 229, 598, 1000, 1291
Lsp1109I GCAGC 7 cut(s) 7, 82, 223, 229, 320, 601, 1282
LweI GCATC 2 cut(s) 94, 118
MaeI CTAG 5 cut(s) 647, 932, 1025, 1131, 1215
MaeII ACGT 1 cut(s) 1247
MaeIII GTNAC 1 cut(s) 662
MalI GATC 6 cut(s) 5, 489, 542, 752, 777, 1316
MbiI CCGCTC 1 cut(s) 421
MboI GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
MhlI GDGCHC 4 cut(s) 82, 141, 859, 1005
MluCI AATT 5 cut(s) 385, 441, 568, 737, 1053
MlyI GAGTC 1 cut(s) 684
MmeI TCCRAC 1 cut(s) 570
MroI TCCGGA 1 cut(s) 361
MseI TTAA 2 cut(s) 741, 1236
MspA1I CMGCKG 2 cut(s) 220, 788
MspI CCGG 5 cut(s) 242, 362, 794, 987, 998
MspR9I CCNGG 3 cut(s) 300, 680, 958
MvaI CCWGG 3 cut(s) 300, 680, 958
MvnI CGCG 2 cut(s) 1111, 1202
MwoI GCNNNNNNNGC 5 cut(s) 26, 104, 242, 611, 1292
NcoI CCATGG 1 cut(s) 977
NdeI CATATG 1 cut(s) 920
NdeII GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
NlaIII CATG 5 cut(s) 853, 886, 981, 1070, 1315
NlaIV GGNNCC 3 cut(s) 182, 374, 438
NmeAIII GCCGAG 2 cut(s) 122, 487
NmuCI GTSAC 1 cut(s) 662
NspV TTCGAA 1 cut(s) 1166
PagI TCATGA 1 cut(s) 1311
PfeI GAWTC 4 cut(s) 303, 879, 1073, 1230
PflFI GACNNNGTC 1 cut(s) 1246
PinAI ACCGGT 1 cut(s) 793
PleI GAGTC 1 cut(s) 683
PpsI GAGTC 1 cut(s) 683
Psp124BI GAGCTC 1 cut(s) 1005
Psp6I CCWGG 3 cut(s) 298, 678, 956
PspGI CCWGG 3 cut(s) 298, 678, 956
PspN4I GGNNCC 3 cut(s) 182, 374, 438
PsrI GAACNNNNNNTAC 2 cut(s) 755, 787
PsyI GACNNNGTC 1 cut(s) 1246
PvuII CAGCTG 2 cut(s) 220, 788
RsaI GTAC 3 cut(s) 792, 798, 1136
RsaNI GTAC 3 cut(s) 791, 797, 1135
SacI GAGCTC 1 cut(s) 1005
SaqAI TTAA 2 cut(s) 741, 1236
Sau3AI GATC 6 cut(s) 3, 487, 540, 750, 775, 1314
SchI GAGTC 1 cut(s) 684
ScrFI CCNGG 3 cut(s) 300, 680, 958
SduI GDGCHC 4 cut(s) 82, 141, 859, 1005
SfaNI GCATC 2 cut(s) 94, 118
SfcI CTRYAG 1 cut(s) 1047
SfuI TTCGAA 1 cut(s) 1166
SmlI CTYRAG 1 cut(s) 48
SmoI CTYRAG 1 cut(s) 48
Sse9I AATT 5 cut(s) 385, 441, 568, 737, 1053
SsiI CCGC 7 cut(s) 421, 458, 605, 1109, 1202, 1210, 1292
SspI AATATT 1 cut(s) 475
SspMI CTAG 5 cut(s) 647, 932, 1025, 1131, 1215
SstI GAGCTC 1 cut(s) 1005
StyD4I CCNGG 3 cut(s) 298, 678, 956
StyI CCWWGG 3 cut(s) 184, 967, 977
TaaI ACNGT 2 cut(s) 588, 1031
TaiI ACGT 1 cut(s) 1250
TaqI TCGA 5 cut(s) 522, 749, 994, 1166, 1228
TasI AATT 5 cut(s) 385, 441, 568, 737, 1053
TauI GCSGC 4 cut(s) 424, 461, 1213, 1295
TfiI GAWTC 4 cut(s) 303, 879, 1073, 1230
Tru1I TTAA 2 cut(s) 741, 1236
Tru9I TTAA 2 cut(s) 741, 1236
TscAI CASTG 1 cut(s) 958
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 7 cut(s) 20, 95, 217, 236, 308, 614, 1295
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 8 cut(s) 180, 416, 423, 838, 871, 920, 1046, 1235
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 1 cut(s) 958
Tth111I GACNNNGTC 1 cut(s) 1246
VneI GTGCAC 1 cut(s) 137
XagI CCTNNNNNAGG 1 cut(s) 1014
XapI RAATTY 3 cut(s) 385, 737, 1053
XspI CTAG 5 cut(s) 647, 932, 1025, 1131, 1215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.