Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015626

Physical Location & Seq

Genomic Coordinates Forward (+)

17208791 .. 17211134

Gene Structure 2344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G221000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGATCACAGAAAAGAAAGCTGCAAATGCCGTGGGAGGCAACACAGCTAGAGCTTGTGATAGCTGTCTGATTAAACGTGCTCGATGGTTTTGTGCTGCTGATGATGCTTTTCTTTGCCAAAGATGTGATGGCTCAGTGCACTCAGCAAACCAGTTAGCAAGCAGACACGAGAGGGTTAAGCTCCAAGCTGCATCTTCCAAATCCAATCAGTCGACTCTACTGGCCGCGGACCAATCTCCACCGGCTTGGCACAAGGGGTTCACACGCAAGGCACGAACTCCACGCCACAATAATAAGCCTCCATTCATGGCCAAAGATGATAAAGAGAAAGTAAGTTTAAACCCTCCTCTTCCTTTCGTGCCGGAGATTGGATGCGAAGAAGCTAATTACATGGATGATGATGAGGAGAATGAAGATCTAGAGCAGCTTCTGTATAGGGTCCCAATCTATGACCCTTTTGCAGCTGAGCTTTGCAACATGTCAAGTCATGAAGTTGGGAATAGCACCAGTGCCATTAATCTTGATGATGAGGTAACTGAGATGGGAAGGGGAAACCATCATGAAGTTGGTGATGATGATGAGGAGAACAATAATAATAATTATGGAGGAAATGAGCTGGATAATTTGCCAGGCTTTCTACCATCAGATATGGAGCTCGCTGAGTTTGCTGCAGATGTTGAGAACCTGATTGGTGGAGGACTTGATGATGAAGATTCTGGTGACATCAAAGGAGTATTGGGACTATTAGATGATAGCAAATTAGAAGGAAATGGGGGTGTGGATGTTTGCATGAAGAATGTTGACATAAATGAAGACAGGAAAGCAGTGAAGGTTGAAGAGGAAGCTGAAGGAATGGAATTCAATCCATCAATGCTGGATTGGAACTCGGATTATGAACTTAGATTATCATCATCACCATTGCCAATGGGTGGTGAGGAGGAGAAGGTGGTCTTCCTCATGGGAGCTCGGAGTAGTGATGAGGTGGCACTAATGGATAACAAGCAGATGATGATGAAGAGGAAGATATGTTTGAGGCTTGATTACGAGGCAATCATCACTGCCTGGGCAAACCAAGGCTCTCCATGGACGACTGGAACTCGACCGGAGCTTAACCCAGACGATGGCTGGCTAGACTGCATGGGTATGCGGGGGAGTGATCAAATTCATCAGCCACATGGACATGGAGAGAGTGCAAGATGTGTAGGTGGAAGAGGTGATGACCGAGGAAGAGAAGCAAGGGTTTCAAGGTACAGAGAGAAGCGAAGGACACGATTGTTTTCAAAGAAAATAAGATACGAAGTAAGGAAGCTGAACGCAGAGAAGAGGCCTAGGATGAAAGGTCGATTTGTTAAGAGGACAAGCAGCTCCAACTTTGTGGGCAGTAGTTCTAGTAATAGTAGTAAGACTGCAGCAGCTGCATTTCCCTACCTCATCCATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

481

Amino Acids

53.36

Weight (kDa)

5.17

Isoelectric Point (pI)

46.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015626)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12150
malus_domestica	MD06G1215800.v1.1 MD14G1226400.v1.1
prunus_persica	Prupe.5G221000_v2.0.a1
pyrus_communis	pycom06g19250 pycom14g18780
rosa_chinensis	RchiOBHm_Chr7g0185411
rosa_laevigata	RLG00000004915
rosa_multiflora	Rmu_sc0001761.1_g000007
rosa_roxburghii	Rroxscaffold_3G00268960
rosa_rugosa	Rorug06G0468900
rosa_samantha	Rh7AG073900 Rh7BG073800 Rh7CG073900 Rh7DG073900
rosa_wichuraiana	Rw7G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	929, 1121
AccI	GTMKAC	1 cut(s)	212
AccII	CGCG	1 cut(s)	227
AciI	CCGC	3 cut(s)	225, 227, 1147
AcoI	YGGCCR	2 cut(s)	222, 309
AcsI	RAATTY	2 cut(s)	857, 1161
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	1 cut(s)	1250
AfiI	CCNNNNNNNGG	3 cut(s)	368, 929, 1121
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	836, 862, 1245, 1281
AjnI	CCWGG	2 cut(s)	628, 1061
Alw21I	GWGCWC	4 cut(s)	82, 141, 657, 967
Alw44I	GTGCAC	1 cut(s)	137
AlwNI	CAGNNNCTG	2 cut(s)	430, 1415
AoxI	GGCC	3 cut(s)	222, 309, 1325
ApaLI	GTGCAC	1 cut(s)	137
ApoI	RAATTY	2 cut(s)	857, 1161
AseI	ATTAAT	1 cut(s)	516
AspA2I	CCTAGG	1 cut(s)	1328
AspS9I	GGNCC	2 cut(s)	229, 439
AsuHPI	GGTGA	5 cut(s)	581, 731, 906, 944, 1226
AvaII	GGWCC	2 cut(s)	229, 439
AvrII	CCTAGG	1 cut(s)	1328
BaeGI	GKGCMC	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	311
BanII	GRGCYC	2 cut(s)	657, 967
BauI	CACGAG	1 cut(s)	167
BbsI	GAAGAC	2 cut(s)	819, 943
Bbv12I	GWGCWC	4 cut(s)	82, 141, 657, 967
BccI	CCATC	7 cut(s)	78, 122, 535, 564, 649, 874, 1115
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	2 cut(s)	630, 1063
BclI	TGATCA	2 cut(s)	3, 1156
BfaI	CTAG	5 cut(s)	48, 419, 1130, 1329, 1389
BfmI	CTRYAG	2 cut(s)	669, 1407
BglII	AGATCT	1 cut(s)	415
BlnI	CCTAGG	1 cut(s)	1328
BlpI	GCTNAGC	1 cut(s)	465
Bme1390I	CCNGG	2 cut(s)	630, 1063
Bme18I	GGWCC	2 cut(s)	229, 439
BmgT120I	GGNCC	2 cut(s)	229, 439
BmiI	GGNNCC	2 cut(s)	440, 441
BmrFI	CCNGG	2 cut(s)	630, 1063
BmsI	GCATC	3 cut(s)	94, 200, 362
BpiI	GAAGAC	2 cut(s)	819, 943
Bpu1102I	GCTNAGC	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	907
BsaJI	CCNNGG	7 cut(s)	30, 225, 1062, 1072, 1082, 1222, 1328
BsaWI	WCCGGW	1 cut(s)	1102
Bsc4I	CCNNNNNNNGG	3 cut(s)	368, 929, 1121
Bse118I	RCCGGY	1 cut(s)	241
Bse1I	ACTGG	4 cut(s)	151, 225, 507, 1096
Bse3DI	GCAATG	1 cut(s)	917
Bse8I	GATNNNNATC	1 cut(s)	907
BseBI	CCWGG	2 cut(s)	630, 1063
BseDI	CCNNGG	7 cut(s)	30, 225, 1062, 1072, 1082, 1222, 1328
BseGI	GGATG	5 cut(s)	377, 400, 787, 1338, 1431
BseJI	GATNNNNATC	1 cut(s)	907
BseLI	CCNNNNNNNGG	3 cut(s)	368, 929, 1121
BseMI	GCAATG	1 cut(s)	917
BseMII	CTCAG	5 cut(s)	147, 156, 456, 528, 651
BseNI	ACTGG	4 cut(s)	151, 225, 507, 1096
BseRI	GAGGAG	5 cut(s)	336, 419, 596, 950, 953
BseSI	GKGCMC	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	227
Bsh1285I	CGRYCG	1 cut(s)	1103
BshFI	GGCC	3 cut(s)	224, 311, 1327
BsiEI	CGRYCG	1 cut(s)	1103
BsiHKAI	GWGCWC	4 cut(s)	82, 141, 657, 967
BsiSI	CCGG	3 cut(s)	242, 362, 1103
BslFI	GGGAC	2 cut(s)	425, 753
BslI	CCNNNNNNNGG	3 cut(s)	368, 929, 1121
BsmFI	GGGAC	2 cut(s)	425, 753
BsnI	GGCC	3 cut(s)	224, 311, 1327
Bsp1286I	GDGCHC	4 cut(s)	82, 141, 657, 967
Bsp143I	GATC	3 cut(s)	3, 415, 1156
Bsp1720I	GCTNAGC	1 cut(s)	465
Bsp19I	CCATGG	1 cut(s)	1082
BspACI	CCGC	3 cut(s)	225, 227, 1147
BspANI	GGCC	3 cut(s)	224, 311, 1327
BspCNI	CTCAG	5 cut(s)	146, 155, 457, 529, 652
BspFNI	CGCG	1 cut(s)	227
BspHI	TCATGA	2 cut(s)	487, 559
BspLI	GGNNCC	2 cut(s)	440, 441
BspMAI	CTGCAG	2 cut(s)	673, 1411
BsrDI	GCAATG	1 cut(s)	917
BsrFI	RCCGGY	1 cut(s)	241
BsrI	ACTGG	4 cut(s)	151, 225, 507, 1096
BssAI	RCCGGY	1 cut(s)	241
BssECI	CCNNGG	7 cut(s)	30, 225, 1062, 1072, 1082, 1222, 1328
BssMI	GATC	3 cut(s)	3, 415, 1156
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	3 cut(s)	1072, 1082, 1328
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	2 cut(s)	630, 1063
Bst6I	CTCTTC	6 cut(s)	354, 831, 1010, 1204, 1222, 1316
BstAPI	GCANNNNNTGC	1 cut(s)	1415
BstC8I	GCNNGC	3 cut(s)	160, 657, 1127
BstDEI	CTNAG	6 cut(s)	133, 142, 465, 537, 660, 899
BstDSI	CCRYGG	3 cut(s)	30, 225, 1082
BstF5I	GGATG	5 cut(s)	377, 400, 787, 1338, 1431
BstFNI	CGCG	1 cut(s)	227
BstKTI	GATC	3 cut(s)	6, 418, 1159
BstMBI	GATC	3 cut(s)	3, 415, 1156
BstMCI	CGRYCG	1 cut(s)	1103
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 104, 665, 1415
BstNI	CCWGG	2 cut(s)	630, 1063
BstNSI	RCATGY	1 cut(s)	481
BstSCI	CCNGG	2 cut(s)	628, 1061
BstSFI	CTRYAG	2 cut(s)	669, 1407
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	1 cut(s)	227
BstV2I	GAAGAC	2 cut(s)	819, 943
BstX2I	RGATCY	1 cut(s)	415
BstXI	CCANNNNNNTGG	2 cut(s)	246, 1375
BstYI	RGATCY	1 cut(s)	415
BsuRI	GGCC	3 cut(s)	224, 311, 1327
BtgI	CCRYGG	3 cut(s)	30, 225, 1082
BtsCI	GGATG	5 cut(s)	377, 400, 787, 1338, 1431
BtsI	GCAGTG	2 cut(s)	831, 1056
BtsIMutI	CAGTG	4 cut(s)	141, 514, 831, 1056
Cac8I	GCNNGC	3 cut(s)	160, 657, 1127
CaiI	CAGNNNCTG	2 cut(s)	430, 1415
CciI	TCATGA	2 cut(s)	487, 559
Cfr10I	RCCGGY	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	229, 439
Cfr42I	CCGCGG	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	1249
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviQI	GTAC	1 cut(s)	1249
DdeI	CTNAG	6 cut(s)	133, 142, 465, 537, 660, 899
DpnI	GATC	3 cut(s)	5, 417, 1158
DpnII	GATC	3 cut(s)	3, 415, 1156
DraI	TTTAAA	1 cut(s)	339
EaeI	YGGCCR	2 cut(s)	222, 309
Eam1104I	CTCTTC	6 cut(s)	354, 831, 1010, 1204, 1222, 1316
EarI	CTCTTC	6 cut(s)	354, 831, 1010, 1204, 1222, 1316
Ecl136II	GAGCTC	2 cut(s)	655, 965
Eco130I	CCWWGG	3 cut(s)	1072, 1082, 1328
Eco147I	AGGCCT	1 cut(s)	1327
Eco24I	GRGCYC	2 cut(s)	657, 967
Eco47I	GGWCC	2 cut(s)	229, 439
Eco53kI	GAGCTC	2 cut(s)	655, 965
Eco57I	CTGAAG	1 cut(s)	867
EcoICRI	GAGCTC	2 cut(s)	655, 965
EcoO109I	RGGNCCY	1 cut(s)	439
EcoRI	GAATTC	1 cut(s)	857
EcoRII	CCWGG	2 cut(s)	628, 1061
EcoT14I	CCWWGG	3 cut(s)	1072, 1082, 1328
EcoT38I	GRGCYC	2 cut(s)	657, 967
ErhI	CCWWGG	3 cut(s)	1072, 1082, 1328
FalI	AAGNNNNNCTT	2 cut(s)	935, 967
FaqI	GGGAC	2 cut(s)	425, 753
FauI	CCCGC	1 cut(s)	1140
FbaI	TGATCA	2 cut(s)	3, 1156
FblI	GTMKAC	1 cut(s)	212
FokI	GGATG	5 cut(s)	384, 407, 794, 1345, 1418
FriOI	GRGCYC	2 cut(s)	657, 967
FspBI	CTAG	5 cut(s)	48, 419, 1130, 1329, 1389
HaeIII	GGCC	3 cut(s)	224, 311, 1327
HapII	CCGG	3 cut(s)	242, 362, 1103
HincII	GTYRAC	2 cut(s)	213, 802
HindII	GTYRAC	2 cut(s)	213, 802
HinfI	GANTC	2 cut(s)	214, 713
HpaII	CCGG	3 cut(s)	242, 362, 1103
HphI	GGTGA	5 cut(s)	581, 731, 906, 944, 1226
Hpy166II	GTNNAC	4 cut(s)	139, 213, 261, 802
Hpy188I	TCNGA	4 cut(s)	69, 646, 889, 969
Hpy188III	TCNNGA	4 cut(s)	419, 488, 521, 560
Hpy8I	GTNNAC	4 cut(s)	139, 213, 261, 802
HpyAV	CCTTC	6 cut(s)	540, 758, 823, 842, 937, 1257
HpyCH4IV	ACGT	1 cut(s)	76
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 104, 665, 1415
HpyF3I	CTNAG	6 cut(s)	133, 142, 465, 537, 660, 899
HpySE526I	ACGT	1 cut(s)	76
KflI	GGGWCCC	1 cut(s)	439
Ksp22I	TGATCA	2 cut(s)	3, 1156
KspI	CCGCGG	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	3, 415, 1156
LmnI	GCTCC	5 cut(s)	186, 652, 962, 1105, 1370
LweI	GCATC	3 cut(s)	94, 200, 362
MaeI	CTAG	5 cut(s)	48, 419, 1130, 1329, 1389
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	2 cut(s)	532, 719
MalI	GATC	3 cut(s)	5, 417, 1158
MboI	GATC	3 cut(s)	3, 415, 1156
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	4 cut(s)	82, 141, 657, 967
MlsI	TGGCCA	1 cut(s)	311
MluCI	AATT	6 cut(s)	385, 598, 622, 758, 857, 1161
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	1392
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
MseI	TTAA	6 cut(s)	72, 177, 338, 516, 1110, 1350
MslI	CAYNNNNRTG	2 cut(s)	1142, 1179
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	3 cut(s)	227, 464, 1415
MspI	CCGG	3 cut(s)	242, 362, 1103
MspR9I	CCNGG	2 cut(s)	630, 1063
MssI	GTTTAAAC	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	630, 1063
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	26, 104, 665, 1415
NcoI	CCATGG	1 cut(s)	1082
NdeII	GATC	3 cut(s)	3, 415, 1156
NlaIV	GGNNCC	2 cut(s)	440, 441
NmuCI	GTSAC	1 cut(s)	719
NspI	RCATGY	1 cut(s)	481
PagI	TCATGA	2 cut(s)	487, 559
PceI	AGGCCT	1 cut(s)	1327
PciI	ACATGT	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PfeI	GAWTC	1 cut(s)	713
PflMI	CCANNNNNTGG	2 cut(s)	929, 1121
PleI	GAGTC	1 cut(s)	208
PmeI	GTTTAAAC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	439
PscI	ACATGT	1 cut(s)	477
PshBI	ATTAAT	1 cut(s)	516
Psp124BI	GAGCTC	2 cut(s)	657, 967
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	628, 1061
PspGI	CCWGG	2 cut(s)	628, 1061
PspN4I	GGNNCC	2 cut(s)	440, 441
PspPI	GGNCC	2 cut(s)	229, 439
PspPPI	RGGWCCY	1 cut(s)	439
PstI	CTGCAG	2 cut(s)	673, 1411
PstNI	CAGNNNCTG	2 cut(s)	430, 1415
PsuI	RGATCY	1 cut(s)	415
PvuII	CAGCTG	2 cut(s)	464, 1415
RsaI	GTAC	1 cut(s)	1250
RsaNI	GTAC	1 cut(s)	1249
RseI	CAYNNNNRTG	2 cut(s)	1142, 1179
SacI	GAGCTC	2 cut(s)	657, 967
SacII	CCGCGG	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	211
SaqAI	TTAA	6 cut(s)	72, 177, 338, 516, 1110, 1350
Sau3AI	GATC	3 cut(s)	3, 415, 1156
Sau96I	GGNCC	2 cut(s)	229, 439
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	630, 1063
SduI	GDGCHC	4 cut(s)	82, 141, 657, 967
SfaNI	GCATC	3 cut(s)	94, 200, 362
SfcI	CTRYAG	2 cut(s)	669, 1407
Sfr303I	CCGCGG	1 cut(s)	228
SgrBI	CCGCGG	1 cut(s)	228
SinI	GGWCC	2 cut(s)	229, 439
SmiMI	CAYNNNNRTG	2 cut(s)	1142, 1179
Sse9I	AATT	6 cut(s)	385, 598, 622, 758, 857, 1161
SseBI	AGGCCT	1 cut(s)	1327
SsiI	CCGC	3 cut(s)	225, 227, 1147
SspMI	CTAG	5 cut(s)	48, 419, 1130, 1329, 1389
SstI	GAGCTC	2 cut(s)	657, 967
StuI	AGGCCT	1 cut(s)	1327
StyD4I	CCNGG	2 cut(s)	628, 1061
StyI	CCWWGG	3 cut(s)	1072, 1082, 1328
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	4 cut(s)	82, 212, 1099, 1342
TaqII	GACCGA	1 cut(s)	1236
TasI	AATT	6 cut(s)	385, 598, 622, 758, 857, 1161
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	6 cut(s)	72, 177, 338, 516, 1110, 1350
Tru9I	TTAA	6 cut(s)	72, 177, 338, 516, 1110, 1350
TscAI	CASTG	4 cut(s)	141, 514, 831, 1063
TseFI	GTSAC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	719
TspRI	CASTG	4 cut(s)	141, 514, 831, 1063
Van91I	CCANNNNNTGG	2 cut(s)	929, 1121
VneI	GTGCAC	1 cut(s)	137
VpaK11BI	GGWCC	2 cut(s)	229, 439
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	2 cut(s)	857, 1161
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	3 cut(s)	125, 563, 1122
XmaJI	CCTAGG	1 cut(s)	1328
XmiI	GTMKAC	1 cut(s)	212
XspI	CTAG	5 cut(s)	48, 419, 1130, 1329, 1389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.