Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015626

Physical Location & Seq

Genomic Coordinates Reverse (-)

59276140 .. 59278464

Gene Structure 2325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0468900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGAAAGCAAGTGCATTCCTTTGCCATCCCCCTCCCTCACATGGAAAGCTCATCACTGTTCTCAGCATTGATGGAGGTGGAATCAAAGGGATTATCCCCGGGACTCTGCTCAGCTTCCTAGAGTCCGAGCTCCAGAAGCTGGATGGTGAAGCTGCAAGGTTGGCAGATTATTTCGATGTTATTGCAGGGACTAGCACAGGTGGCCTTGTCACCGCCATGCTTACCGCCCCGGATCAAAACAACCGTCCCTTGTTTGCGGCTAACCAGATTGTCGATTTTTACCTTGAGCACTGCCCTAAAATATTCCCTCAAATCAATATTCCACTGTTTGGTGACGCCTTAGAAAATGCAAAGGGTGTATACGCACCAAAATATGATGGCAAGTATTTACACAAGCTTATCAAGGAAAAATTAGGAGACAGACGATTGAACCAGACATTGACCAATGTTGTGATCCCAACTTTTGATATAAGTTGCCTCCAACCAGCTATCTTCTCCACCTACGAGTTGAAAAGGAACAAGAAATTAGATCCGGCTCTACTGTCGGATATATGCATCGGAACTTCAGCAGCACCAACTTATCTTCCCTCGCATTATTTCAAAACCGCAACAAGAGAATTCCATCTCGTTGATGGCGGTGTGGCTGCTAATAACCCGGGTTTGACTGCTATAACCGAAGTGACAAAAGAAATCAAGAAGGGAAATACTGACTTCTCTCCGATTGAGGCAGCTGATCAGGGTAATAGGTTCCTCCTCATATCTTTGGGTACTGGTTCATCAGCAAAATCCAAGTACGATGCCAGAGTAGCAGCTAAGTGGGGTATTATGGCATGGTTGATGCAAGCCAACTTTCAATGTCCATTGTTAGATGTACTCACTGAAGCAAGTAGTGACATGGTAGATTGCCACCTTTCTACCCTTTTCCAAGCTCTTTGGTCTGACGATAACTACCTTCGAATTCAGGATGACCAATTGAGCACCGACTTGAATTCTATGGATAATGCTACGCCTGAAAACTTGAAAAAACTTGTAAAAGTGGGAGAGGCACTGTTAAAGAAACAAGCTTCAAAGTTGAATATAGCTACCGGCCTCCATGAGCCTGATGAACATCATATTACTAATGAAGAGGCTCTCAGAAGGGTAGCGGCAGTTCTCTCCAAAGAGAAGAAGGAACGTGCAATCAGATCAGCAGCACCACAAGCAAACCCAGCATCTGCCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0048367 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

408

Amino Acids

44.48

Weight (kDa)

6.22

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Patatin	PF01734	22 - 220	4.6e-21	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015626)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g12150
malus_domestica	MD06G1215800.v1.1 MD14G1226400.v1.1
prunus_persica	Prupe.5G221000_v2.0.a1
pyrus_communis	pycom06g19250 pycom14g18780
rosa_chinensis	RchiOBHm_Chr7g0185411
rosa_laevigata	RLG00000004915
rosa_multiflora	Rmu_sc0001761.1_g000007
rosa_roxburghii	Rroxscaffold_3G00268960
rosa_rugosa	Rorug06G0468900
rosa_samantha	Rh7AG073900 Rh7BG073800 Rh7CG073900 Rh7DG073900
rosa_wichuraiana	Rw7G006140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	142, 332
AccI	GTMKAC	1 cut(s)	363
AciI	CCGC	6 cut(s)	216, 228, 260, 609, 639, 1148
AclWI	GGATC	3 cut(s)	243, 451, 527
AcsI	RAATTY	3 cut(s)	620, 960, 991
AcuI	CTGAAG	2 cut(s)	552, 903
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	3 cut(s)	772, 797, 876
AfiI	CCNNNNNNNGG	3 cut(s)	44, 142, 332
AgsI	TTSAA	8 cut(s)	433, 514, 604, 857, 991, 1024, 1071, 1078
Alw21I	GWGCWC	3 cut(s)	135, 294, 983
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	3 cut(s)	243, 451, 527
AlwNI	CAGNNNCTG	2 cut(s)	142, 1217
Ama87I	CYCGRG	2 cut(s)	101, 658
AoxI	GGCC	2 cut(s)	205, 1090
ApeKI	GCWGC	6 cut(s)	155, 572, 647, 731, 812, 1193
ApoI	RAATTY	3 cut(s)	620, 960, 991
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AsuC2I	CCSGG	5 cut(s)	102, 103, 233, 659, 660
AsuHPI	GGTGA	3 cut(s)	161, 205, 347
AsuII	TTCGAA	1 cut(s)	958
AvaI	CYCGRG	2 cut(s)	101, 658
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	3 cut(s)	135, 294, 983
BbvI	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
BccI	CCATC	6 cut(s)	36, 68, 140, 374, 629, 633
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	5 cut(s)	102, 103, 233, 659, 660
BcoDI	GTCTC	1 cut(s)	414
BfaI	CTAG	2 cut(s)	122, 195
BisI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
BlpI	GCTNAGC	1 cut(s)	113
BlsI	GCNGC	8 cut(s)	157, 262, 574, 649, 733, 814, 1150, 1195
Bme1390I	CCNGG	5 cut(s)	102, 103, 233, 659, 660
BmeT110I	CYCGRG	2 cut(s)	101, 658
BmiI	GGNNCC	1 cut(s)	752
BmrFI	CCNGG	5 cut(s)	102, 103, 233, 659, 660
BmsI	GCATC	4 cut(s)	567, 790, 831, 1223
BpmI	CTGGAG	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	113
Bpu14I	TTCGAA	1 cut(s)	958
BpuEI	CTTGAG	1 cut(s)	308
BpuMI	CCSGG	5 cut(s)	102, 103, 233, 659, 660
BsaBI	GATNNNNATC	1 cut(s)	1110
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	4 cut(s)	100, 101, 231, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 142, 332
Bse118I	RCCGGY	1 cut(s)	1088
Bse1I	ACTGG	1 cut(s)	778
Bse8I	GATNNNNATC	1 cut(s)	1110
BseDI	CCNNGG	4 cut(s)	100, 101, 231, 658
BseGI	GGATG	3 cut(s)	28, 151, 973
BseJI	GATNNNNATC	1 cut(s)	1110
BseLI	CCNNNNNNNGG	3 cut(s)	44, 142, 332
BseMII	CTCAG	3 cut(s)	79, 127, 1150
BseNI	ACTGG	1 cut(s)	778
BseRI	GAGGAG	1 cut(s)	746
BseXI	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
BseYI	CCCAGC	1 cut(s)	1210
BshFI	GGCC	2 cut(s)	207, 1092
BsiHKAI	GWGCWC	3 cut(s)	135, 294, 983
BsiHKCI	CYCGRG	2 cut(s)	101, 658
BsiSI	CCGG	5 cut(s)	102, 233, 536, 659, 1089
BslFI	GGGAC	3 cut(s)	118, 205, 234
BslI	CCNNNNNNNGG	3 cut(s)	44, 142, 332
BsmAI	GTCTC	1 cut(s)	414
BsmFI	GGGAC	3 cut(s)	118, 205, 234
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	2 cut(s)	207, 1092
BsoBI	CYCGRG	2 cut(s)	101, 658
Bsp119I	TTCGAA	1 cut(s)	958
Bsp1286I	GDGCHC	3 cut(s)	135, 294, 983
Bsp143I	GATC	5 cut(s)	235, 456, 532, 736, 1187
Bsp1720I	GCTNAGC	1 cut(s)	113
BspACI	CCGC	6 cut(s)	216, 228, 260, 609, 639, 1148
BspANI	GGCC	2 cut(s)	207, 1092
BspCNI	CTCAG	3 cut(s)	78, 126, 1149
BspLI	GGNNCC	1 cut(s)	752
BspPI	GGATC	3 cut(s)	243, 451, 527
BspT104I	TTCGAA	1 cut(s)	958
BsrFI	RCCGGY	1 cut(s)	1088
BsrI	ACTGG	1 cut(s)	778
BssAI	RCCGGY	1 cut(s)	1088
BssECI	CCNNGG	4 cut(s)	100, 101, 231, 658
BssMI	GATC	5 cut(s)	235, 456, 532, 736, 1187
BssNAI	GTATAC	1 cut(s)	364
BssNI	GRCGYC	1 cut(s)	339
Bst1107I	GTATAC	1 cut(s)	364
Bst4CI	ACNGT	5 cut(s)	61, 248, 330, 546, 1053
Bst6I	CTCTTC	1 cut(s)	1122
BstACI	GRCGYC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	958
BstC8I	GCNNGC	2 cut(s)	846, 1222
BstDEI	CTNAG	5 cut(s)	65, 113, 343, 816, 1136
BstF5I	GGATG	3 cut(s)	28, 151, 973
BstKTI	GATC	5 cut(s)	238, 459, 535, 739, 1190
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	5 cut(s)	235, 456, 532, 736, 1187
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 164, 204, 809, 1202, 1211
BstSCI	CCNGG	5 cut(s)	100, 101, 231, 657, 658
BstV1I	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
BstX2I	RGATCY	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	532
BstZ17I	GTATAC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	207, 1092
BtsCI	GGATG	3 cut(s)	28, 151, 973
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	5 cut(s)	57, 292, 326, 879, 1049
Cac8I	GCNNGC	2 cut(s)	846, 1222
CaiI	CAGNNNCTG	2 cut(s)	142, 1217
Cfr10I	RCCGGY	1 cut(s)	1088
Cfr9I	CCCGGG	2 cut(s)	101, 658
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	771, 796, 875
CviAII	CATG	5 cut(s)	44, 220, 834, 898, 1097
CviQI	GTAC	3 cut(s)	771, 796, 875
DdeI	CTNAG	5 cut(s)	65, 113, 343, 816, 1136
DpnI	GATC	5 cut(s)	237, 458, 534, 738, 1189
DpnII	GATC	5 cut(s)	235, 456, 532, 736, 1187
Eam1104I	CTCTTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	1122
Ecl136II	GAGCTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	552, 903
Eco88I	CYCGRG	2 cut(s)	101, 658
EcoICRI	GAGCTC	1 cut(s)	133
EcoRI	GAATTC	3 cut(s)	620, 960, 991
EcoT22I	ATGCAT	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	5 cut(s)	47, 223, 837, 901, 1100
FaqI	GGGAC	3 cut(s)	118, 205, 234
FatI	CATG	5 cut(s)	43, 219, 833, 897, 1096
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
FokI	GGATG	3 cut(s)	15, 158, 980
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
FspBI	CTAG	2 cut(s)	122, 195
GluI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
GsaI	CCCAGC	1 cut(s)	1214
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	207, 1092
HapII	CCGG	5 cut(s)	102, 233, 536, 659, 1089
HgaI	GACGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	47, 223, 837, 901, 1100
HindIII	AAGCTT	2 cut(s)	398, 1065
HinfI	GANTC	3 cut(s)	84, 106, 125
HpaII	CCGG	5 cut(s)	102, 233, 536, 659, 1089
HphI	GGTGA	3 cut(s)	161, 205, 347
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	7 cut(s)	130, 550, 563, 723, 943, 1139, 1187
Hpy188III	TCNNGA	3 cut(s)	136, 697, 965
Hpy8I	GTNNAC	1 cut(s)	364
HpyAV	CCTTC	4 cut(s)	694, 965, 1134, 1165
HpyCH4III	ACNGT	5 cut(s)	61, 248, 330, 546, 1053
HpyCH4IV	ACGT	1 cut(s)	1177
HpyCH4V	TGCA	7 cut(s)	17, 158, 188, 353, 558, 844, 1181
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 164, 204, 809, 1202, 1211
HpyF3I	CTNAG	5 cut(s)	65, 113, 343, 816, 1136
HpySE526I	ACGT	1 cut(s)	1177
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	5 cut(s)	47, 223, 837, 901, 1100
Ksp22I	TGATCA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	235, 456, 532, 736, 1187
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	6 cut(s)	142, 584, 634, 743, 824, 1205
LweI	GCATC	4 cut(s)	567, 790, 831, 1223
MaeI	CTAG	2 cut(s)	122, 195
MaeII	ACGT	1 cut(s)	1177
MaeIII	GTNAC	4 cut(s)	211, 335, 682, 893
MalI	GATC	5 cut(s)	237, 458, 534, 738, 1189
MboI	GATC	5 cut(s)	235, 456, 532, 736, 1187
MboII	GAAGA	4 cut(s)	487, 578, 1139, 1180
MfeI	CAATTG	1 cut(s)	974
MflI	RGATCY	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	135, 294, 983
MluCI	AATT	6 cut(s)	413, 527, 620, 960, 974, 991
MlyI	GAGTC	2 cut(s)	100, 134
MmeI	TCCRAC	2 cut(s)	508, 528
Mph1103I	ATGCAT	1 cut(s)	560
MseI	TTAA	1 cut(s)	1055
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	2 cut(s)	734, 1224
MspI	CCGG	5 cut(s)	102, 233, 536, 659, 1089
MspR9I	CCNGG	5 cut(s)	102, 103, 233, 659, 660
MunI	CAATTG	1 cut(s)	974
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	6 cut(s)	139, 164, 204, 809, 1202, 1211
NciI	CCSGG	5 cut(s)	102, 103, 233, 659, 660
NdeII	GATC	5 cut(s)	235, 456, 532, 736, 1187
NlaIII	CATG	5 cut(s)	47, 223, 837, 901, 1100
NlaIV	GGNNCC	1 cut(s)	752
NmuCI	GTSAC	4 cut(s)	211, 335, 682, 893
NsiI	ATGCAT	1 cut(s)	560
NspV	TTCGAA	1 cut(s)	958
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	84
PflMI	CCANNNNNTGG	2 cut(s)	142, 332
PkrI	GCNGC	8 cut(s)	157, 262, 574, 649, 733, 814, 1150, 1195
PleI	GAGTC	2 cut(s)	100, 133
PpsI	GAGTC	2 cut(s)	100, 133
Psp124BI	GAGCTC	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	1210
PspN4I	GGNNCC	1 cut(s)	752
PsrI	GAACNNNNNNTAC	2 cut(s)	1137, 1169
PstNI	CAGNNNCTG	2 cut(s)	142, 1217
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	2 cut(s)	734, 1224
RsaI	GTAC	3 cut(s)	772, 797, 876
RsaNI	GTAC	3 cut(s)	771, 796, 875
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	1055
SatI	GCNGC	8 cut(s)	156, 261, 573, 648, 732, 813, 1149, 1194
Sau3AI	GATC	5 cut(s)	235, 456, 532, 736, 1187
SchI	GAGTC	2 cut(s)	100, 134
ScrFI	CCNGG	5 cut(s)	102, 103, 233, 659, 660
SduI	GDGCHC	3 cut(s)	135, 294, 983
SfaNI	GCATC	4 cut(s)	567, 790, 831, 1223
SfuI	TTCGAA	1 cut(s)	958
SmaI	CCCGGG	2 cut(s)	103, 660
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	6 cut(s)	413, 527, 620, 960, 974, 991
SsiI	CCGC	6 cut(s)	216, 228, 260, 609, 639, 1148
SspI	AATATT	2 cut(s)	306, 322
SspMI	CTAG	2 cut(s)	122, 195
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	5 cut(s)	100, 101, 231, 657, 658
TaaI	ACNGT	5 cut(s)	61, 248, 330, 546, 1053
TaiI	ACGT	1 cut(s)	1180
TaqI	TCGA	3 cut(s)	177, 276, 958
TasI	AATT	6 cut(s)	413, 527, 620, 960, 974, 991
TatI	WGTACW	1 cut(s)	874
TauI	GCSGC	2 cut(s)	263, 1151
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	1055
Tru9I	TTAA	1 cut(s)	1055
TscAI	CASTG	5 cut(s)	64, 299, 333, 886, 1056
TseFI	GTSAC	4 cut(s)	211, 335, 682, 893
TseI	GCWGC	6 cut(s)	155, 572, 647, 731, 812, 1193
Tsp45I	GTSAC	4 cut(s)	211, 335, 682, 893
TspDTI	ATGAA	3 cut(s)	768, 1122, 1140
TspMI	CCCGGG	2 cut(s)	101, 658
TspRI	CASTG	5 cut(s)	64, 299, 333, 886, 1056
Van91I	CCANNNNNTGG	2 cut(s)	142, 332
XapI	RAATTY	3 cut(s)	620, 960, 991
XcmI	CCANNNNNNNNNTGG	2 cut(s)	143, 632
XmaI	CCCGGG	2 cut(s)	101, 658
XmiI	GTMKAC	1 cut(s)	363
XspI	CTAG	2 cut(s)	122, 195
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.