FvH4_5g14400

dCTP pyrophosphatase 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
8155972 .. 8156913
942 bp
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UTR
Exon/CDS
Intron
FvH4_5g14400.t1

Sequence Viewer

Length: 387 bp
ATGGGGAGCTCCTATGAGTTTTCAAGAAATGAAAACAAAGATGTTTCACTTCAGGAACTGAGAGACAGGCTTGCTGAGTTTTCTCGAGTTAGAGATTGGGAACAATACCACAGTCCTAGAAATCTTCTTCTAGCACTAGTTGGAGAGGTTGGGGAGCTGTCTGAGATCTTCCAGTGGAAGGGTGAAGTTGCAAGAGGACTACCAAACTGGAGTTCTGATGACAAAGAACATTTAGGAGAGGAGCTCTCTGATGTGCTGCTCTATCTGATCCAGCTTGCCGATGTTTGCGGCATTGATCTTGGACAAGCAGCACTCAGTAAGATTGTCAAGAATGCTAGGAAGTATCCAGTTTCCAACCAAACACCAGCTGCAGCTTCAACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

129

Amino Acids

14.39

Weight (kDa)

4.9

Isoelectric Point (pI)

28.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG PF03819 38 - 116 1.9e-07 MazG nucleotide pyrophosphohydrolase domain
MazG-like PF12643 49 - 120 4.6e-10 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016339)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 288
AclWI GGATC 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 2 cut(s) 24, 378
AhlI ACTAGT 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 196, 228
AluBI AGCT 6 cut(s) 9, 157, 244, 274, 368, 374
AluI AGCT 6 cut(s) 9, 157, 244, 274, 368, 374
Alw21I GWGCWC 2 cut(s) 11, 246
Alw26I GTCTC 1 cut(s) 57
AlwI GGATC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 84
ApeKI GCWGC 4 cut(s) 256, 308, 368, 371
AsuHPI GGTGA 1 cut(s) 194
AvaI CYCGRG 1 cut(s) 84
BanII GRGCYC 2 cut(s) 11, 246
Bbv12I GWGCWC 2 cut(s) 11, 246
BbvI GCAGC 4 cut(s) 243, 320, 355, 383
BciVI GTATCC 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 57
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 5 cut(s) 117, 131, 137, 336, 385
BfmI CTRYAG 1 cut(s) 369
BfuI GTATCC 1 cut(s) 354
BglII AGATCT 1 cut(s) 165
BisI GCNGC 5 cut(s) 257, 289, 309, 369, 372
BlsI GCNGC 5 cut(s) 258, 290, 310, 370, 373
BmeT110I CYCGRG 1 cut(s) 84
BplI GAGNNNNNCTC 4 cut(s) 228, 260, 230, 262
BpmI CTGGAG 1 cut(s) 229
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 3 cut(s) 172, 212, 347
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 4 cut(s) 50, 66, 153, 328
BseNI ACTGG 3 cut(s) 172, 212, 347
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 4 cut(s) 243, 320, 355, 383
BsiHKAI GWGCWC 2 cut(s) 11, 246
BsiHKCI CYCGRG 1 cut(s) 84
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 337
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 2 cut(s) 11, 246
Bsp143I GATC 3 cut(s) 165, 267, 295
BspACI CCGC 1 cut(s) 288
BspCNI CTCAG 4 cut(s) 51, 67, 154, 327
BspMAI CTGCAG 1 cut(s) 373
BspPI GGATC 1 cut(s) 262
BsrI ACTGG 3 cut(s) 172, 212, 347
BssMI GATC 3 cut(s) 165, 267, 295
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 72, 276
BstDEI CTNAG 4 cut(s) 59, 75, 162, 314
BstKTI GATC 3 cut(s) 168, 270, 298
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 3 cut(s) 165, 267, 295
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 4 cut(s) 243, 320, 355, 383
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuI GTATCC 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 72, 276
CaiI CAGNNNCTG 1 cut(s) 58
CviJI RGCY 7 cut(s) 9, 70, 157, 244, 274, 368, 374
CviKI_1 RGCY 7 cut(s) 9, 70, 157, 244, 274, 368, 374
DdeI CTNAG 4 cut(s) 59, 75, 162, 314
DpnI GATC 3 cut(s) 167, 269, 297
DpnII GATC 3 cut(s) 165, 267, 295
Ecl136II GAGCTC 2 cut(s) 9, 244
Eco24I GRGCYC 2 cut(s) 11, 246
Eco53kI GAGCTC 2 cut(s) 9, 244
Eco57I CTGAAG 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 84
EcoICRI GAGCTC 2 cut(s) 9, 244
EcoT38I GRGCYC 2 cut(s) 11, 246
FaiI YATR 1 cut(s) 15
Fnu4HI GCNGC 5 cut(s) 257, 289, 309, 369, 372
FriOI GRGCYC 2 cut(s) 11, 246
Fsp4HI GCNGC 5 cut(s) 257, 289, 309, 369, 372
FspBI CTAG 5 cut(s) 117, 131, 137, 336, 385
GluI GCNGC 5 cut(s) 257, 289, 309, 369, 372
GsuI CTGGAG 1 cut(s) 229
HphI GGTGA 1 cut(s) 194
Hpy188I TCNGA 4 cut(s) 163, 217, 250, 267
Hpy188III TCNNGA 4 cut(s) 24, 53, 84, 328
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 2 cut(s) 191, 371
HpyF3I CTNAG 4 cut(s) 59, 75, 162, 314
Kzo9I GATC 3 cut(s) 165, 267, 295
LmnI GCTCC 4 cut(s) 6, 14, 154, 241
LpnPI CCDG 7 cut(s) 38, 52, 185, 193, 284, 360, 378
Lsp1109I GCAGC 4 cut(s) 243, 320, 355, 383
MaeI CTAG 5 cut(s) 117, 131, 137, 336, 385
MalI GATC 3 cut(s) 167, 269, 297
MboI GATC 3 cut(s) 165, 267, 295
MboII GAAGA 3 cut(s) 116, 119, 160
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 2 cut(s) 11, 246
MmeI TCCRAC 2 cut(s) 121, 378
MnlI CCTC 3 cut(s) 139, 188, 232
MspA1I CMGCKG 1 cut(s) 368
Mva1269I GAATGC 1 cut(s) 337
NdeII GATC 3 cut(s) 165, 267, 295
PaeR7I CTCGAG 1 cut(s) 84
PctI GAATGC 1 cut(s) 337
PkrI GCNGC 5 cut(s) 258, 290, 310, 370, 373
Psp124BI GAGCTC 2 cut(s) 11, 246
PstI CTGCAG 1 cut(s) 373
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 368
SacI GAGCTC 2 cut(s) 11, 246
SatI GCNGC 5 cut(s) 257, 289, 309, 369, 372
Sau3AI GATC 3 cut(s) 165, 267, 295
SduI GDGCHC 2 cut(s) 11, 246
SetI ASST 7 cut(s) 11, 150, 159, 246, 276, 370, 376
SfcI CTRYAG 1 cut(s) 369
Sfr274I CTCGAG 1 cut(s) 84
SlaI CTCGAG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 136
SsiI CCGC 1 cut(s) 288
SspMI CTAG 5 cut(s) 117, 131, 137, 336, 385
SstI GAGCTC 2 cut(s) 11, 246
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 85
TauI GCSGC 1 cut(s) 291
TscAI CASTG 1 cut(s) 179
TseI GCWGC 4 cut(s) 256, 308, 368, 371
TspDTI ATGAA 1 cut(s) 45
TspRI CASTG 1 cut(s) 179
XhoI CTCGAG 1 cut(s) 84
XspI CTAG 5 cut(s) 117, 131, 137, 336, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.