Prupe.5G202000_v2.0.a1

dCTP pyrophosphatase 1-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
16284204 .. 16285809
1606 bp
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UTR
Exon/CDS
Intron
Prupe.5G202000.1

Sequence Viewer

Length: 414 bp
ATGAGCCAAATTGGAGGAGAGCTAGGATCAGAAGAGATGGGAAGTTCTTATGAGGTTGCAAGAAATGCTAAGGATGTTTCACTTCAAGAACTCAGAGATAGGCTTGCTGAGTTTGCTCAAGTAAGAGGATGGGATCAATATCACAGTCCAAGGAACCTCCTTCTAGCTCTGGTGGGAGAGGTTGGAGAATTGTCTGAAATTTTCCAATGGAAGGGAGAAGTTGCAAGAGGACTGCCTAATTGGACTTGTGATGAGAAAGAGCATTTGGAAGAGGAGCTCTCTGATGTCTTGCTTTATCTGATTCAACTTGCTGATGTTTGTGGACTTGATCTTGGACAAGCTGCACTCTCCAAAATTGTCAAGAATGCTAGGAAATACCCTGTTACCAATCAAACACCAAACTCCACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

138

Amino Acids

15.29

Weight (kDa)

4.67

Isoelectric Point (pI)

29.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016339)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 34, 141
AcsI RAATTY 1 cut(s) 198
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 2 cut(s) 86, 305
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 4 cut(s) 22, 167, 277, 341
AluI AGCT 4 cut(s) 22, 167, 277, 341
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 2 cut(s) 34, 141
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 198
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 31, 123
BfaI CTAG 4 cut(s) 23, 164, 369, 412
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 263, 295
Bpu10I CCTNAGC 1 cut(s) 69
BpuEI CTTGAG 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 149
Bsc4I CCNNNNNNNGG 1 cut(s) 211
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 149
BseGI GGATG 2 cut(s) 79, 134
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 99, 106
BseRI GAGGAG 2 cut(s) 30, 287
BseXI GCAGC 1 cut(s) 328
BsgI GTGCAG 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 211
BsmI GAATGC 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 26, 133, 328
BspCNI CTCAG 2 cut(s) 100, 105
BspLI GGNNCC 1 cut(s) 155
BspPI GGATC 2 cut(s) 34, 141
BssECI CCNNGG 1 cut(s) 149
BssMI GATC 3 cut(s) 26, 133, 328
BssT1I CCWWGG 1 cut(s) 149
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 2 cut(s) 27, 264
BstAPI GCANNNNNTGC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 69, 92, 108
BstF5I GGATG 2 cut(s) 79, 134
BstKTI GATC 3 cut(s) 29, 136, 331
BstMBI GATC 3 cut(s) 26, 133, 328
BstMWI GCNNNNNNNGC 2 cut(s) 65, 113
BstV1I GCAGC 1 cut(s) 328
BtsCI GGATG 2 cut(s) 79, 134
Cac8I GCNNGC 1 cut(s) 105
CviJI RGCY 6 cut(s) 6, 22, 103, 167, 277, 341
CviKI_1 RGCY 6 cut(s) 6, 22, 103, 167, 277, 341
DdeI CTNAG 3 cut(s) 69, 92, 108
DpnI GATC 3 cut(s) 28, 135, 330
DpnII GATC 3 cut(s) 26, 133, 328
Eam1104I CTCTTC 2 cut(s) 27, 264
EarI CTCTTC 2 cut(s) 27, 264
Ecl136II GAGCTC 1 cut(s) 277
Eco130I CCWWGG 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 149
FaiI YATR 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 2 cut(s) 86, 141
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 4 cut(s) 23, 164, 369, 412
GluI GCNGC 1 cut(s) 342
HinfI GANTC 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 5 cut(s) 31, 95, 196, 283, 300
Hpy188III TCNNGA 2 cut(s) 86, 361
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 2 cut(s) 170, 205
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4V TGCA 3 cut(s) 59, 224, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 113
HpyF3I CTNAG 3 cut(s) 69, 92, 108
Kzo9I GATC 3 cut(s) 26, 133, 328
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 2 cut(s) 155, 393
Lsp1109I GCAGC 1 cut(s) 328
MaeI CTAG 4 cut(s) 23, 164, 369, 412
MaeIII GTNAC 1 cut(s) 382
MalI GATC 3 cut(s) 28, 135, 330
MboI GATC 3 cut(s) 26, 133, 328
MboII GAAGA 2 cut(s) 44, 281
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 5 cut(s) 9, 188, 198, 238, 354
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 7 cut(s) 8, 46, 119, 167, 172, 221, 265
Mva1269I GAATGC 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 65, 113
NdeII GATC 3 cut(s) 26, 133, 328
NlaIV GGNNCC 1 cut(s) 155
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 1 cut(s) 301
PkrI GCNGC 1 cut(s) 343
Psp124BI GAGCTC 1 cut(s) 279
PspN4I GGNNCC 1 cut(s) 155
SacI GAGCTC 1 cut(s) 279
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 3 cut(s) 26, 133, 328
SduI GDGCHC 1 cut(s) 279
SetI ASST 7 cut(s) 24, 57, 159, 169, 183, 279, 343
SmlI CTYRAG 1 cut(s) 117
SmoI CTYRAG 1 cut(s) 117
Sse9I AATT 5 cut(s) 9, 188, 198, 238, 354
SspMI CTAG 4 cut(s) 23, 164, 369, 412
SstI GAGCTC 1 cut(s) 279
StyI CCWWGG 1 cut(s) 149
TaaI ACNGT 1 cut(s) 146
TasI AATT 5 cut(s) 9, 188, 198, 238, 354
TfiI GAWTC 1 cut(s) 301
TseI GCWGC 1 cut(s) 341
XapI RAATTY 1 cut(s) 198
XspI CTAG 4 cut(s) 23, 164, 369, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.