MD14G1206300.v1.1

dCTP pyrophosphatase 1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
29352028 .. 29353050
1023 bp
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UTR
Exon/CDS
Intron
MD14G1206300.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGGGAGTTCTCATGAGCTTGCAAGAAATGGTCATAAAGATGTTTCACTTCAAGAACTTAGTGATCGGCTTGCTGAGTTTGCTCAAGTAAGAGGATGGGAACAATATCACAGCCCCAGAAATCTCCTTCTAGCACTAGTGGGAGAGGTTGGAGAACTGTCTGAAATTTTCCAGTGGAAAGGTGAAGTTGCAAGAGGGCTGCCTGACTGGACTTCTGATGACAAAGAGCATTTGGAAGAGGAGCTCTCTGATGTTCTGCTCTACCTGATTCAACTGGCAGACGTTTGCGGACTTGATCTTGGACAAGCAGCTCTCACCAAGATTGTCAAGAATGCAAGAAAATACCCCGTTGCCAAGCAAACAGCAGCTTCCACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.03

Weight (kDa)

5.01

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG PF03819 38 - 116 5.1e-08 MazG nucleotide pyrophosphohydrolase domain
MazG-like PF12643 49 - 122 3.4e-10 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016339)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 165
AgsI TTSAA 2 cut(s) 53, 272
AhlI ACTAGT 1 cut(s) 136
AluBI AGCT 4 cut(s) 19, 244, 311, 368
AluI AGCT 4 cut(s) 19, 244, 311, 368
Alw21I GWGCWC 1 cut(s) 246
ApeKI GCWGC 3 cut(s) 199, 308, 365
ApoI RAATTY 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 194, 307
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 186, 320, 377
BccI CCATC 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 3 cut(s) 131, 137, 379
BisI GCNGC 3 cut(s) 200, 309, 366
BlsI GCNGC 3 cut(s) 201, 310, 367
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpuEI CTTGAG 1 cut(s) 69
Bse1I ACTGG 3 cut(s) 172, 212, 279
BseGI GGATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 172, 212, 279
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 3 cut(s) 186, 320, 377
BsiHKAI GWGCWC 1 cut(s) 246
BsmI GAATGC 1 cut(s) 337
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 64, 295
BspACI CCGC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 13
BsrI ACTGG 3 cut(s) 172, 212, 279
BssMI GATC 2 cut(s) 64, 295
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 21, 72
BstDEI CTNAG 2 cut(s) 59, 75
BstF5I GGATG 1 cut(s) 101
BstKTI GATC 2 cut(s) 67, 298
BstMBI GATC 2 cut(s) 64, 295
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 186, 320, 377
BtsCI GGATG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 2 cut(s) 21, 72
CciI TCATGA 1 cut(s) 13
CviAII CATG 1 cut(s) 14
CviJI RGCY 7 cut(s) 19, 70, 114, 199, 244, 311, 368
CviKI_1 RGCY 7 cut(s) 19, 70, 114, 199, 244, 311, 368
DdeI CTNAG 2 cut(s) 59, 75
DpnI GATC 2 cut(s) 66, 297
DpnII GATC 2 cut(s) 64, 295
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 36
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 200, 309, 366
FokI GGATG 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 200, 309, 366
FspBI CTAG 3 cut(s) 131, 137, 379
GluI GCNGC 3 cut(s) 200, 309, 366
Hin1II CATG 1 cut(s) 17
HinfI GANTC 1 cut(s) 268
HphI GGTGA 2 cut(s) 194, 307
Hpy188I TCNGA 3 cut(s) 163, 217, 250
Hpy188III TCNNGA 3 cut(s) 14, 53, 328
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 3 cut(s) 23, 191, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 59, 75
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 2 cut(s) 64, 295
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 6 cut(s) 130, 185, 193, 216, 260, 278
Lsp1109I GCAGC 3 cut(s) 186, 320, 377
MaeI CTAG 3 cut(s) 131, 137, 379
MaeII ACGT 1 cut(s) 282
MalI GATC 2 cut(s) 66, 297
MboI GATC 2 cut(s) 64, 295
MboII GAAGA 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 4 cut(s) 86, 139, 188, 232
MslI CAYNNNNRTG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 64, 295
NlaIII CATG 1 cut(s) 17
PagI TCATGA 1 cut(s) 13
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 268
PkrI GCNGC 3 cut(s) 201, 310, 367
Psp124BI GAGCTC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 39
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 3 cut(s) 200, 309, 366
Sau3AI GATC 2 cut(s) 64, 295
SduI GDGCHC 1 cut(s) 246
SetI ASST 8 cut(s) 21, 150, 184, 246, 267, 285, 313, 370
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 136
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 288
SspMI CTAG 3 cut(s) 131, 137, 379
SstI GAGCTC 1 cut(s) 246
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 285
TasI AATT 1 cut(s) 165
TfiI GAWTC 1 cut(s) 268
TscAI CASTG 1 cut(s) 179
TseI GCWGC 3 cut(s) 199, 308, 365
TspRI CASTG 1 cut(s) 179
XapI RAATTY 1 cut(s) 165
XspI CTAG 3 cut(s) 131, 137, 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.