MD06G1198900.v1.1

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016339
Physical Location & Seq
Forward (+)
33279146 .. 33279943
798 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1198900.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGGGAGTTCTCATGAGCTTACAAGAAATGGCCATAAGGATGTTTCACTTCAAGAACTCAGTGATAGGCTTGCTGAGTTTGCTCAAGTAAGAGGATGGGAAGAATATCACAGCCCCAGAAATCTCCTTCTAGCACTAGTGGGAGAGGTTGGAGAACTGTCTGAAATTTTCCAGTGGAAGGGTGAAGTTGCAAGAGGGCTGCCTAACTGGACTTCTGATGAGAAAGAGCATTTGGAAGAGGAGCTCTCTGATGTTCTGCTCTACCTGATTCAACTCGCCGACGTCTGCGGACTTGATCTGGGACAAGCAGCTCTCACCAAGATTGTCAAGAATGCAAGAAAATACCCCGTTACGAATCAAACAACAGCTTCCACCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

127

Amino Acids

14.12

Weight (kDa)

4.92

Isoelectric Point (pI)

23.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MazG PF03819 38 - 116 1.2e-07 MazG nucleotide pyrophosphohydrolase domain
MazG-like PF12643 49 - 122 7.8e-10 MazG-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016339)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14400
malus_domestica MD06G1198900.v1.1 MD14G1206300.v1.1
prunus_persica Prupe.5G199700_v2.0.a1 Prupe.5G202000_v2.0.a1
pyrus_communis pycom06g17580
rosa_chinensis RchiOBHm_Chr7g0182261
rosa_multiflora Rmu_sc0000003.1_g000009
rosa_roxburghii Rroxscaffold_3G00271370
rosa_rugosa Rorug06G0446500
rosa_samantha Rh7AG049600 Rh7BG049700 Rh7CG051000 Rh7DG048900
rosa_wichuraiana Rw7G004070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
AciI CCGC 1 cut(s) 288
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 165
AcyI GRCGYC 1 cut(s) 282
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 2 cut(s) 53, 272
AhlI ACTAGT 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 4 cut(s) 19, 244, 311, 368
AluI AGCT 4 cut(s) 19, 244, 311, 368
Alw21I GWGCWC 1 cut(s) 246
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 199, 308
ApoI RAATTY 1 cut(s) 165
AsuHPI GGTGA 2 cut(s) 194, 307
BalI TGGCCA 1 cut(s) 33
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 2 cut(s) 186, 320
BccI CCATC 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 136
BfaI CTAG 3 cut(s) 131, 137, 379
BisI GCNGC 2 cut(s) 200, 309
BlsI GCNGC 2 cut(s) 201, 310
BplI GAGNNNNNCTC 2 cut(s) 230, 262
BpuEI CTTGAG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 2 cut(s) 172, 212
BseGI GGATG 2 cut(s) 46, 101
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 2 cut(s) 66, 73
BseNI ACTGG 2 cut(s) 172, 212
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 186, 320
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 315
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 1 cut(s) 33
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 2 cut(s) 67, 72
BspHI TCATGA 1 cut(s) 13
BsrI ACTGG 2 cut(s) 172, 212
BssMI GATC 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 231
BstACI GRCGYC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 59, 75
BstF5I GGATG 2 cut(s) 46, 101
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 186, 320
BsuRI GGCC 1 cut(s) 33
BtsCI GGATG 2 cut(s) 46, 101
BtsIMutI CAGTG 2 cut(s) 67, 179
Cac8I GCNNGC 1 cut(s) 72
CciI TCATGA 1 cut(s) 13
CviAII CATG 1 cut(s) 14
CviJI RGCY 8 cut(s) 19, 33, 70, 114, 199, 244, 311, 368
CviKI_1 RGCY 8 cut(s) 19, 33, 70, 114, 199, 244, 311, 368
DdeI CTNAG 2 cut(s) 59, 75
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 1 cut(s) 17
FaiI YATR 2 cut(s) 15, 36
FaqI GGGAC 1 cut(s) 315
FatI CATG 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 200, 309
FokI GGATG 2 cut(s) 53, 108
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 200, 309
FspBI CTAG 3 cut(s) 131, 137, 379
GluI GCNGC 2 cut(s) 200, 309
HaeIII GGCC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 1 cut(s) 17
HinfI GANTC 2 cut(s) 268, 355
HphI GGTGA 2 cut(s) 194, 307
Hpy188I TCNGA 3 cut(s) 163, 217, 250
Hpy188III TCNNGA 3 cut(s) 14, 53, 328
Hpy99I CGWCG 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 137, 172
HpyCH4III ACNGT 1 cut(s) 159
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 191, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 59, 75
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 5 cut(s) 130, 185, 193, 278, 284
Lsp1109I GCAGC 2 cut(s) 186, 320
MaeI CTAG 3 cut(s) 131, 137, 379
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 349
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 2 cut(s) 113, 248
MhlI GDGCHC 1 cut(s) 246
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 1 cut(s) 165
MluNI TGGCCA 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 4 cut(s) 86, 139, 188, 232
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MslI CAYNNNNRTG 1 cut(s) 39
Msp20I TGGCCA 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 295
NlaIII CATG 1 cut(s) 17
PagI TCATGA 1 cut(s) 13
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 268, 355
PkrI GCNGC 2 cut(s) 201, 310
Psp124BI GAGCTC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 39
SacI GAGCTC 1 cut(s) 246
SatI GCNGC 2 cut(s) 200, 309
Sau3AI GATC 1 cut(s) 295
SduI GDGCHC 1 cut(s) 246
SetI ASST 7 cut(s) 21, 150, 246, 267, 285, 313, 370
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 84
SmoI CTYRAG 1 cut(s) 84
SpeI ACTAGT 1 cut(s) 136
Sse9I AATT 1 cut(s) 165
SsiI CCGC 1 cut(s) 288
SspMI CTAG 3 cut(s) 131, 137, 379
SstI GAGCTC 1 cut(s) 246
TaaI ACNGT 1 cut(s) 159
TaiI ACGT 1 cut(s) 285
TasI AATT 1 cut(s) 165
TfiI GAWTC 2 cut(s) 268, 355
TscAI CASTG 2 cut(s) 67, 179
TseI GCWGC 2 cut(s) 199, 308
TspRI CASTG 2 cut(s) 67, 179
XapI RAATTY 1 cut(s) 165
XspI CTAG 3 cut(s) 131, 137, 379
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.