Rorug06G0446500

dCTP pyrophosphatase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016339
Physical Location & Seq
Reverse (-)
57737934 .. 57739979
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0446500.1

Sequence Viewer

Length: 981 bp
ATGAATGCTCATCTTCTTCCTTTGCTCTCTCTTCTTCCTCTTCTTCTTCTTCTGAGCACAACTAGTGCTCAACTTCGAGTCGATCATTACAGAAACACATGCCCAAATGTCGAATCAATTGTCCATGCCGCAGTTAAACAGAAGTTTGAGCAGACATTTACGACTGCACCAGGCACTCTCAGACTCTTCTTCCACGATTGCTTTGTCCGGGGTTGTGATGCTTCAGTGATACTAGCTTTTAGGAACCACTCGGCGGAGAAGGATAACCCGGACGATATGTCACTCGCCGGAGACGGGTTTGACACGGTGATCAAAGCCAAGGCTGCTGTTGATAGAGTGGCTGGATGCAGGAACAAGGTTTCTTGTGCTGACATTCTTGCCATGGCCACAAGAGATGTCGTATCACTGAGTGGAGGACCATATTATGGAGTTGAATTGGGGAGACTTGATGGGAGGGTGTCCACAAAAACCAGTGTGAGGAAGCATCTTCCTCATCCTGATTTTAAAGTGGACCAACTGAAAGCTATGTTTTCCAAACATGGTCTCTCTCTAACCGATCTCATTGCTCTCTCGGGGGCTCATACGATCGGGTTCTCACACTGCAACCGATTCAACCACCGGATACACAACTTCAAGAGCAAGAACAGAATTGATCCGACAATGAATGTGGATTACGCAATGAGCCTCAGGAAACAGTGTCCGAAGAATGTAGACCCAAGAAATGCGATTACTTTGGACCCAACCACGCCGCAGAGATTCGATAACATGTACTACAAGAACCTTCAGCAAGGAAGAGGATTGCTTACTTCTGATCAGTGTTTGTTTACTGACACCAGAACAAGGCACATTGTCAACTTCTTTGCAGCAAACAACACAGCCTTTAAACATGCCTTCGTGGCTGCTATTACAAAGCTTGGTAGAGTTGGGGTTAAGACCGGAAAGCAAGGTGAAATTAGACGGGATTGTACCGCTGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00240 ko01100 map00240 map01100
Pfam Domains
Protein Families
MazG-like

Protein Analysis

326

Amino Acids

36.2

Weight (kDa)

9.56

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 41 - 290 7.7e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016339)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g14400
malus_domestica MD06G1198900.v1.1 MD14G1206300.v1.1
prunus_persica Prupe.5G199700_v2.0.a1 Prupe.5G202000_v2.0.a1
pyrus_communis pycom06g17580
rosa_chinensis RchiOBHm_Chr7g0182261
rosa_multiflora Rmu_sc0000003.1_g000009
rosa_roxburghii Rroxscaffold_3G00271370
rosa_rugosa Rorug06G0446500
rosa_samantha Rh7AG049600 Rh7BG049700 Rh7CG051000 Rh7DG048900
rosa_wichuraiana Rw7G004070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 425
AccI GTMKAC 1 cut(s) 711
AciI CCGC 4 cut(s) 129, 254, 749, 969
AclWI GGATC 1 cut(s) 647
AcoI YGGCCR 1 cut(s) 384
AcuI CTGAAG 2 cut(s) 207, 767
AdeI CACNNNGTG 1 cut(s) 410
AfaI GTAC 2 cut(s) 770, 967
AfiI CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
AflIII ACRYGT 1 cut(s) 765
AgsI TTSAA 3 cut(s) 434, 613, 634
AhdI GACNNNNNGTC 1 cut(s) 277
AhlI ACTAGT 1 cut(s) 62
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 3 cut(s) 236, 524, 913
AluI AGCT 3 cut(s) 236, 524, 913
Alw21I GWGCWC 2 cut(s) 59, 70
Alw26I GTCTC 3 cut(s) 285, 436, 548
AlwI GGATC 1 cut(s) 647
Ama87I CYCGRG 1 cut(s) 571
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 323, 863, 899
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspS9I GGNCC 3 cut(s) 416, 511, 736
AsuC2I CCSGG 2 cut(s) 209, 269
AsuHPI GGTGA 2 cut(s) 319, 959
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 3 cut(s) 416, 511, 736
AxyI CCTNAGG 1 cut(s) 686
BalI TGGCCA 1 cut(s) 386
BanII GRGCYC 1 cut(s) 580
Bbv12I GWGCWC 2 cut(s) 59, 70
BbvI GCAGC 3 cut(s) 310, 875, 886
BccI CCATC 1 cut(s) 443
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 1 cut(s) 171
BciVI GTATCC 1 cut(s) 615
BclI TGATCA 2 cut(s) 309, 811
BcnI CCSGG 2 cut(s) 209, 269
BcoDI GTCTC 3 cut(s) 285, 436, 548
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 2 cut(s) 63, 233
BfuI GTATCC 1 cut(s) 615
BglI GCCNNNNNGGC 1 cut(s) 896
BisI GCNGC 5 cut(s) 129, 324, 749, 864, 900
BlsI GCNGC 5 cut(s) 130, 325, 750, 865, 901
Bme1390I CCNGG 3 cut(s) 171, 209, 269
Bme18I GGWCC 3 cut(s) 416, 511, 736
BmeRI GACNNNNNGTC 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 3 cut(s) 416, 511, 736
BmiI GGNNCC 2 cut(s) 245, 738
BmrFI CCNGG 3 cut(s) 171, 209, 269
BmsI GCATC 3 cut(s) 208, 335, 493
BpuMI CCSGG 2 cut(s) 209, 269
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 3 cut(s) 208, 318, 381
BsaWI WCCGGW 2 cut(s) 618, 935
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
Bse1I ACTGG 1 cut(s) 471
Bse21I CCTNAGG 1 cut(s) 686
Bse3DI GCAATG 2 cut(s) 561, 684
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 208, 318, 381
BseGI GGATG 2 cut(s) 350, 493
BseLI CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
BseMI GCAATG 2 cut(s) 561, 684
BseMII CTCAG 4 cut(s) 44, 193, 398, 700
BseNI ACTGG 1 cut(s) 471
BseXI GCAGC 3 cut(s) 310, 875, 886
BsgI GTGCAG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 588
BshFI GGCC 1 cut(s) 386
BsiEI CGRYCG 1 cut(s) 588
BsiHKAI GWGCWC 2 cut(s) 59, 70
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 5 cut(s) 208, 269, 288, 619, 936
BslI CCNNNNNNNGG 5 cut(s) 253, 294, 425, 477, 840
BsmAI GTCTC 3 cut(s) 285, 436, 548
BsmBI CGTCTC 1 cut(s) 285
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 386
Bso31I GGTCTC 1 cut(s) 548
BsoBI CYCGRG 1 cut(s) 571
Bsp1286I GDGCHC 3 cut(s) 59, 70, 580
Bsp143I GATC 6 cut(s) 82, 309, 556, 585, 652, 811
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 4 cut(s) 129, 254, 749, 969
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 4 cut(s) 45, 192, 399, 699
BspLI GGNNCC 2 cut(s) 245, 738
BspPI GGATC 1 cut(s) 647
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 561, 684
BsrI ACTGG 1 cut(s) 471
BssECI CCNNGG 3 cut(s) 208, 318, 381
BssMI GATC 6 cut(s) 82, 309, 556, 585, 652, 811
BssT1I CCWWGG 2 cut(s) 318, 381
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 307, 696
Bst6I CTCTTC 4 cut(s) 36, 45, 191, 787
BstDEI CTNAG 4 cut(s) 53, 179, 407, 686
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 2 cut(s) 350, 493
BstKTI GATC 6 cut(s) 85, 312, 559, 588, 655, 814
BstMAI GTCTC 3 cut(s) 285, 436, 548
BstMBI GATC 6 cut(s) 82, 309, 556, 585, 652, 811
BstMCI CGRYCG 1 cut(s) 588
BstMWI GCNNNNNNNGC 2 cut(s) 323, 896
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 3 cut(s) 102, 769, 890
BstSCI CCNGG 3 cut(s) 169, 207, 267
BstV1I GCAGC 3 cut(s) 310, 875, 886
Bsu36I CCTNAGG 1 cut(s) 686
BsuI GTATCC 1 cut(s) 615
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 2 cut(s) 350, 493
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 6 cut(s) 231, 404, 478, 598, 701, 821
Cfr13I GGNCC 3 cut(s) 416, 511, 736
Csp6I GTAC 2 cut(s) 769, 966
CspCI CAANNNNNGTGG 2 cut(s) 648, 683
CviAII CATG 6 cut(s) 99, 125, 382, 539, 766, 887
CviQI GTAC 2 cut(s) 769, 966
DdeI CTNAG 4 cut(s) 53, 179, 407, 686
DpnI GATC 6 cut(s) 84, 311, 558, 587, 654, 813
DpnII GATC 6 cut(s) 82, 309, 556, 585, 652, 811
DraI TTTAAA 2 cut(s) 505, 883
DraIII CACNNNGTG 1 cut(s) 410
DriI GACNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 4 cut(s) 36, 45, 191, 787
Eam1105I GACNNNNNGTC 1 cut(s) 277
EarI CTCTTC 4 cut(s) 36, 45, 191, 787
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 318, 381
Eco24I GRGCYC 1 cut(s) 580
Eco31I GGTCTC 1 cut(s) 548
Eco47I GGWCC 3 cut(s) 416, 511, 736
Eco57I CTGAAG 2 cut(s) 207, 767
Eco81I CCTNAGG 1 cut(s) 686
Eco88I CYCGRG 1 cut(s) 571
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 318, 381
EcoT38I GRGCYC 1 cut(s) 580
ErhI CCWWGG 2 cut(s) 318, 381
Esp3I CGTCTC 1 cut(s) 285
FaeI CATG 6 cut(s) 102, 128, 385, 542, 769, 890
FatI CATG 6 cut(s) 98, 124, 381, 538, 765, 886
FbaI TGATCA 2 cut(s) 309, 811
FblI GTMKAC 1 cut(s) 711
Fnu4HI GCNGC 5 cut(s) 129, 324, 749, 864, 900
FokI GGATG 2 cut(s) 357, 480
FriOI GRGCYC 1 cut(s) 580
Fsp4HI GCNGC 5 cut(s) 129, 324, 749, 864, 900
FspBI CTAG 2 cut(s) 63, 233
GluI GCNGC 5 cut(s) 129, 324, 749, 864, 900
HaeIII GGCC 1 cut(s) 386
HapII CCGG 5 cut(s) 208, 269, 288, 619, 936
Hin1II CATG 6 cut(s) 102, 128, 385, 542, 769, 890
HincII GTYRAC 1 cut(s) 853
HindII GTYRAC 1 cut(s) 853
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 5 cut(s) 78, 113, 183, 609, 756
HpaII CCGG 5 cut(s) 208, 269, 288, 619, 936
HphI GGTGA 2 cut(s) 319, 959
Hpy166II GTNNAC 6 cut(s) 462, 511, 712, 825, 853, 976
Hpy188I TCNGA 5 cut(s) 54, 182, 657, 702, 811
Hpy188III TCNNGA 3 cut(s) 497, 634, 688
Hpy8I GTNNAC 6 cut(s) 462, 511, 712, 825, 853, 976
HpyAV CCTTC 3 cut(s) 253, 791, 901
HpyCH4III ACNGT 2 cut(s) 307, 696
HpyCH4V TGCA 4 cut(s) 167, 348, 603, 863
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 896
HpyF3I CTNAG 4 cut(s) 53, 179, 407, 686
Hsp92II CATG 6 cut(s) 102, 128, 385, 542, 769, 890
Ksp22I TGATCA 2 cut(s) 309, 811
Kzo9I GATC 6 cut(s) 82, 309, 556, 585, 652, 811
Lsp1109I GCAGC 3 cut(s) 310, 875, 886
LweI GCATC 3 cut(s) 208, 335, 493
MaeI CTAG 2 cut(s) 63, 233
MaeIII GTNAC 1 cut(s) 279
MalI GATC 6 cut(s) 84, 311, 558, 587, 654, 813
MboI GATC 6 cut(s) 82, 309, 556, 585, 652, 811
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 3 cut(s) 59, 70, 580
MlsI TGGCCA 1 cut(s) 386
MluCI AATT 4 cut(s) 117, 434, 648, 951
MluNI TGGCCA 1 cut(s) 386
MlyI GAGTC 2 cut(s) 87, 177
MmeI TCCRAC 1 cut(s) 680
MnlI CCTC 7 cut(s) 48, 407, 447, 471, 501, 695, 788
Mox20I TGGCCA 1 cut(s) 386
MscI TGGCCA 1 cut(s) 386
MseI TTAA 4 cut(s) 135, 504, 882, 930
Msp20I TGGCCA 1 cut(s) 386
MspA1I CMGCKG 1 cut(s) 971
MspI CCGG 5 cut(s) 208, 269, 288, 619, 936
MspR9I CCNGG 3 cut(s) 171, 209, 269
MunI CAATTG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 323, 896
NciI CCSGG 2 cut(s) 209, 269
NcoI CCATGG 1 cut(s) 381
NdeII GATC 6 cut(s) 82, 309, 556, 585, 652, 811
NlaIII CATG 6 cut(s) 102, 128, 385, 542, 769, 890
NlaIV GGNNCC 2 cut(s) 245, 738
NmeAIII GCCGAG 1 cut(s) 230
NmuCI GTSAC 1 cut(s) 279
NspI RCATGY 3 cut(s) 102, 769, 890
PciI ACATGT 1 cut(s) 765
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 3 cut(s) 113, 609, 756
PflMI CCANNNNNTGG 1 cut(s) 425
PkrI GCNGC 5 cut(s) 130, 325, 750, 865, 901
Ple19I CGATCG 1 cut(s) 588
PleI GAGTC 2 cut(s) 86, 177
PpsI GAGTC 2 cut(s) 86, 177
PscI ACATGT 1 cut(s) 765
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 245, 738
PspPI GGNCC 3 cut(s) 416, 511, 736
PvuI CGATCG 1 cut(s) 588
RsaI GTAC 2 cut(s) 770, 967
RsaNI GTAC 2 cut(s) 769, 966
SaqAI TTAA 4 cut(s) 135, 504, 882, 930
SatI GCNGC 5 cut(s) 129, 324, 749, 864, 900
Sau3AI GATC 6 cut(s) 82, 309, 556, 585, 652, 811
Sau96I GGNCC 3 cut(s) 416, 511, 736
SchI GAGTC 2 cut(s) 87, 177
ScrFI CCNGG 3 cut(s) 171, 209, 269
SduI GDGCHC 3 cut(s) 59, 70, 580
SetI ASST 6 cut(s) 238, 360, 526, 783, 915, 949
SfaNI GCATC 3 cut(s) 208, 335, 493
SinI GGWCC 3 cut(s) 416, 511, 736
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 4 cut(s) 117, 434, 648, 951
SsiI CCGC 4 cut(s) 129, 254, 749, 969
SspMI CTAG 2 cut(s) 63, 233
StyD4I CCNGG 3 cut(s) 169, 207, 267
StyI CCWWGG 2 cut(s) 318, 381
TaaI ACNGT 2 cut(s) 307, 696
TaqI TCGA 4 cut(s) 76, 81, 111, 759
TasI AATT 4 cut(s) 117, 434, 648, 951
TatI WGTACW 1 cut(s) 768
TauI GCSGC 2 cut(s) 131, 751
TfiI GAWTC 3 cut(s) 113, 609, 756
Tru1I TTAA 4 cut(s) 135, 504, 882, 930
Tru9I TTAA 4 cut(s) 135, 504, 882, 930
TscAI CASTG 6 cut(s) 231, 411, 478, 605, 701, 821
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 3 cut(s) 323, 863, 899
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 2 cut(s) 17, 677
TspRI CASTG 6 cut(s) 231, 411, 478, 605, 701, 821
Van91I CCANNNNNTGG 1 cut(s) 425
VpaK11BI GGWCC 3 cut(s) 416, 511, 736
XceI RCATGY 3 cut(s) 102, 769, 890
XmiI GTMKAC 1 cut(s) 711
XspI CTAG 2 cut(s) 63, 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.