Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011495

Physical Location & Seq

Genomic Coordinates Forward (+)

8624267 .. 8627000

Gene Structure 2734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTGTTGGTTTTGGCCTTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTGCCTGCAAAGTTCAAGTCCATGCTTGTTCCTGGCAAGATCCAGCATATCATTTGCACTGGGAATCTCTGTATCAAAGAAGTTCATGACTACTTGAAGACTCTTTGTCCCGACTTGCATATTGCTCGAGGTGAGTACGATGAAGAGACAAGATATCCAGAGACCAAAACACTGACTATCGGTCAATTTAAGTTGGGACTATGCCATGGCCATCAGGTTATTCCATGGGGGGACCTAGATTCTCTAGCCATGCTTCAAAGGCAGTTAGATGTAGATATCCTTGTCACAGGTCACACCCATCAGTTCACAGCCTACAAGCATGAAGGGGGTGTTGTTATAAACCCTGGGTCTGCCAGCGGAGCCTATAGCAGCATCACCTATGATGTCAATCCAAGCTTTGTCCTCATGGACATTGATGGCCTTCGTGTGGTTGTCTATGTTTATGAACTCATTGATGGGGAGGTTAAGGTTGACAAGATTGATTTCAAGAAGACAACTGCTACTCACTCCGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001881 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0023051 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042886 GO:0043112 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044260 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Metallophos_2

Protein Analysis

191

Amino Acids

21.12

Weight (kDa)

6.02

Isoelectric Point (pI)

21.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos_2	PF12850	4 - 157	2.9e-22	Calcineurin-like phosphoesterase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47810 AT3G47810 AT3G47810
fragaria_vesca	FvH4_5g15250
malus_domestica	MD06G1190100.v1.1 MD14G1197000.v1.1
prunus_persica	Prupe.5G189200_v2.0.a1
pyrus_communis	pycom06g16880 pycom14g16370
rosa_chinensis	RchiOBHm_Chr7g0180841
rosa_laevigata	RLG00000005226
rosa_multiflora	Rmu_sc0007457.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272480
rosa_rugosa	Rorug06G0436800 Rorug06G0436900
rosa_samantha	Rh7AG038400 Rh7BG038000 Rh7CG039600 Rh7DG038100
rosa_wichuraiana	Rw7G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	566
AciI	CCGC	2 cut(s)	411, 564
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	262
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	70, 151, 311, 541
AhdI	GACNNNNNGTC	2 cut(s)	159, 234
AjnI	CCWGG	2 cut(s)	85, 397
AluBI	AGCT	1 cut(s)	450
AluI	AGCT	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	194, 209
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	3 cut(s)	15, 262, 472
ApeKI	GCWGC	1 cut(s)	423
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	197, 421
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	46
BbsI	GAAGAC	2 cut(s)	158, 551
BbvI	GCAGC	1 cut(s)	435
BccI	CCATC	4 cut(s)	273, 360, 464, 503
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	2 cut(s)	87, 399
BcoDI	GTCTC	2 cut(s)	194, 209
BfaI	CTAG	2 cut(s)	290, 299
BfmI	CTRYAG	1 cut(s)	418
BisI	GCNGC	1 cut(s)	424
BlsI	GCNGC	1 cut(s)	425
Bme1390I	CCNGG	2 cut(s)	87, 399
Bme18I	GGWCC	1 cut(s)	286
BmeRI	GACNNNNNGTC	2 cut(s)	159, 234
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	3 cut(s)	48, 287, 415
BmrFI	CCNGG	2 cut(s)	87, 399
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	1 cut(s)	435
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	2 cut(s)	158, 551
BsaBI	GATNNNNATC	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	441
BseBI	CCWGG	2 cut(s)	87, 399
BseDI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseNI	ACTGG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	435
BshFI	GGCC	3 cut(s)	17, 264, 474
BshNI	GGYRCC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	180
BslFI	GGGAC	3 cut(s)	147, 264, 299
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	194, 209
BsmFI	GGGAC	3 cut(s)	147, 264, 299
BsnI	GGCC	3 cut(s)	17, 264, 474
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	52, 93
Bsp19I	CCATGG	2 cut(s)	259, 278
BspACI	CCGC	2 cut(s)	411, 564
BspANI	GGCC	3 cut(s)	17, 264, 474
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	48, 287, 415
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	566
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
BssMI	GATC	2 cut(s)	52, 93
BssT1I	CCWWGG	3 cut(s)	18, 259, 278
Bst2UI	CCWGG	2 cut(s)	87, 399
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	60, 409
BstDSI	CCRYGG	2 cut(s)	259, 278
BstKTI	GATC	2 cut(s)	55, 96
BstMAI	GTCTC	2 cut(s)	194, 209
BstMBI	GATC	2 cut(s)	52, 93
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 413
BstNI	CCWGG	2 cut(s)	87, 399
BstSCI	CCNGG	2 cut(s)	85, 397
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	435
BstV2I	GAAGAC	2 cut(s)	158, 551
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	17, 264, 474
BtgI	CCRYGG	2 cut(s)	259, 278
BtsIMutI	CAGTG	2 cut(s)	111, 224
Cac8I	GCNNGC	2 cut(s)	60, 409
CciI	TCATGA	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	7 cut(s)	76, 140, 260, 279, 304, 374, 460
CviJI	RGCY	7 cut(s)	17, 264, 302, 365, 416, 450, 474
CviKI_1	RGCY	7 cut(s)	17, 264, 302, 365, 416, 450, 474
CviQI	GTAC	1 cut(s)	190
DpnI	GATC	2 cut(s)	54, 95
DpnII	GATC	2 cut(s)	52, 93
DriI	GACNNNNNGTC	2 cut(s)	159, 234
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	2 cut(s)	159, 234
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	18, 259, 278
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	2 cut(s)	209, 331
Eco47I	GGWCC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	2 cut(s)	85, 397
EcoRV	GATATC	2 cut(s)	209, 331
EcoT14I	CCWWGG	3 cut(s)	18, 259, 278
ErhI	CCWWGG	3 cut(s)	18, 259, 278
FaeI	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
FaqI	GGGAC	3 cut(s)	147, 264, 299
FatI	CATG	7 cut(s)	75, 139, 259, 278, 303, 373, 459
Fnu4HI	GCNGC	1 cut(s)	424
Fsp4HI	GCNGC	1 cut(s)	424
FspBI	CTAG	2 cut(s)	290, 299
GluI	GCNGC	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	17, 264, 474
Hin1II	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	3 cut(s)	118, 154, 293
HphI	GGTGA	2 cut(s)	197, 421
Hpy166II	GTNNAC	2 cut(s)	360, 526
Hpy188III	TCNNGA	4 cut(s)	140, 164, 212, 541
Hpy8I	GTNNAC	2 cut(s)	360, 526
HpyAV	CCTTC	2 cut(s)	371, 485
HpyCH4V	TGCA	4 cut(s)	31, 62, 111, 172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 413
Hsp92II	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
Kzo9I	GATC	2 cut(s)	52, 93
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	435
LweI	GCATC	1 cut(s)	435
MaeI	CTAG	2 cut(s)	290, 299
MaeIII	GTNAC	2 cut(s)	337, 344
MalI	GATC	2 cut(s)	54, 95
MbiI	CCGCTC	1 cut(s)	566
MboI	GATC	2 cut(s)	52, 93
MboII	GAAGA	3 cut(s)	163, 209, 556
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	3 cut(s)	176, 467, 508
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	2 cut(s)	243, 519
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	1 cut(s)	411
MspR9I	CCNGG	2 cut(s)	87, 399
MvaI	CCWGG	2 cut(s)	87, 399
MwoI	GCNNNNNNNGC	2 cut(s)	313, 413
NcoI	CCATGG	2 cut(s)	259, 278
NdeII	GATC	2 cut(s)	52, 93
NlaIII	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
NlaIV	GGNNCC	3 cut(s)	48, 287, 415
NmuCI	GTSAC	2 cut(s)	337, 344
PaeR7I	CTCGAG	1 cut(s)	180
PagI	TCATGA	1 cut(s)	139
PasI	CCCWGGG	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	118, 293
PkrI	GCNGC	1 cut(s)	425
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	85, 397
PspGI	CCWGG	2 cut(s)	85, 397
PspN4I	GGNNCC	3 cut(s)	48, 287, 415
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PspXI	VCTCGAGB	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	2 cut(s)	243, 519
SatI	GCNGC	1 cut(s)	424
Sau3AI	GATC	2 cut(s)	52, 93
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	2 cut(s)	87, 399
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	9 cut(s)	52, 187, 273, 291, 346, 434, 452, 519, 525
SfaNI	GCATC	1 cut(s)	435
SfcI	CTRYAG	1 cut(s)	418
Sfr274I	CTCGAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	411, 564
SspMI	CTAG	2 cut(s)	290, 299
StyD4I	CCNGG	2 cut(s)	85, 397
StyI	CCWWGG	3 cut(s)	18, 259, 278
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	118, 293
Tru1I	TTAA	2 cut(s)	243, 519
Tru9I	TTAA	2 cut(s)	243, 519
TscAI	CASTG	2 cut(s)	118, 231
TseFI	GTSAC	2 cut(s)	337, 344
TseI	GCWGC	1 cut(s)	423
Tsp45I	GTSAC	2 cut(s)	337, 344
TspDTI	ATGAA	4 cut(s)	128, 210, 390, 513
TspRI	CASTG	2 cut(s)	118, 231
VpaK11BI	GGWCC	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	180
XspI	CTAG	2 cut(s)	290, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.