Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011495

Physical Location & Seq

Genomic Coordinates Forward (+)

66066679 .. 66068459

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005226

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGTTGGTTTTGGCCTTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTACCTGCGAAGTTCAAGTCCATGCTTGTTCCAGGCAAGATCCAGCATATAATTTGCACTGGGAATCTTTGTATCAAAGAAGTTCATGACTACTTGAAGACTCTTTGTCCCGACTTGCATATCGCTCGAGGTGAGTATGACGAAGAGACACGATATCCAGAGACCAAAACACTGACTATTGGTCAATTTAAGTTGGGACTCTGCCACGGCCATCAGGTTATTCCATGGGGGGACCTAGACTCGCTAGCCATGCTTCAAAGGCAGTTGGATGTAGATATCCTTGTTACAGGTCACACCCATCAGTTCACAGCCTACAAGCATGAAGGGGGTGTTGTTATAAACCCCGGGTCTGCCAGTGGCGCCTATAGCAGTATCACCTATGATGTCAACCCAAGCTTTGTCCTCATGGACATTGATGGCCTTCGTGTGGTTGTCTATGTATATGAGCTCATTGATGGGGAGGTTAAGGTTGACAAGATTGATTTCAAGAAGACAACTGCCGCTACTCACTCCACTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001881 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0023051 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042886 GO:0043112 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044260 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Metallophos_2

Protein Analysis

192

Amino Acids

21.22

Weight (kDa)

6.02

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos_2	PF12850	4 - 157	2.9e-22	Calcineurin-like phosphoesterase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47810 AT3G47810 AT3G47810
fragaria_vesca	FvH4_5g15250
malus_domestica	MD06G1190100.v1.1 MD14G1197000.v1.1
prunus_persica	Prupe.5G189200_v2.0.a1
pyrus_communis	pycom06g16880 pycom14g16370
rosa_chinensis	RchiOBHm_Chr7g0180841
rosa_laevigata	RLG00000005226
rosa_multiflora	Rmu_sc0007457.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272480
rosa_rugosa	Rorug06G0436800 Rorug06G0436900
rosa_samantha	Rh7AG038400 Rh7BG038000 Rh7CG039600 Rh7DG038100
rosa_wichuraiana	Rw7G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
Acc36I	ACCTGC	1 cut(s)	67
AccB1I	GGYRCC	2 cut(s)	46, 413
AciI	CCGC	1 cut(s)	555
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	262
AcyI	GRCGYC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	70, 151, 311, 541
AhdI	GACNNNNNGTC	2 cut(s)	159, 234
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	2 cut(s)	450, 502
AluI	AGCT	2 cut(s)	450, 502
Alw21I	GWGCWC	1 cut(s)	504
Alw26I	GTCTC	2 cut(s)	194, 209
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	2 cut(s)	180, 398
AoxI	GGCC	3 cut(s)	15, 262, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	286
AsuC2I	CCSGG	2 cut(s)	399, 400
AsuHPI	GGTGA	2 cut(s)	197, 421
AsuNHI	GCTAGC	1 cut(s)	298
AvaI	CYCGRG	2 cut(s)	180, 398
AvaII	GGWCC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	2 cut(s)	46, 413
BanII	GRGCYC	1 cut(s)	504
BbsI	GAAGAC	2 cut(s)	158, 551
Bbv12I	GWGCWC	1 cut(s)	504
BccI	CCATC	4 cut(s)	273, 360, 464, 503
BceAI	ACGGC	1 cut(s)	277
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	1 cut(s)	87
BcnI	CCSGG	2 cut(s)	399, 400
BcoDI	GTCTC	2 cut(s)	194, 209
BfaI	CTAG	2 cut(s)	290, 299
BfmI	CTRYAG	1 cut(s)	418
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	3 cut(s)	87, 399, 400
Bme18I	GGWCC	1 cut(s)	286
BmeRI	GACNNNNNGTC	2 cut(s)	159, 234
BmeT110I	CYCGRG	2 cut(s)	180, 398
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	3 cut(s)	48, 287, 415
BmrFI	CCNGG	3 cut(s)	87, 399, 400
BmrI	ACTGGG	1 cut(s)	123
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	2 cut(s)	158, 551
BpuMI	CCSGG	2 cut(s)	399, 400
BsaHI	GRCGYC	1 cut(s)	414
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	118, 408
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseNI	ACTGG	2 cut(s)	118, 408
BseSI	GKGCMC	1 cut(s)	49
BshFI	GGCC	3 cut(s)	17, 264, 474
BshNI	GGYRCC	2 cut(s)	46, 413
BsiHKAI	GWGCWC	1 cut(s)	504
BsiHKCI	CYCGRG	2 cut(s)	180, 398
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	3 cut(s)	147, 264, 299
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	2 cut(s)	194, 209
BsmFI	GGGAC	3 cut(s)	147, 264, 299
BsnI	GGCC	3 cut(s)	17, 264, 474
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	2 cut(s)	180, 398
Bsp1286I	GDGCHC	2 cut(s)	49, 504
Bsp143I	GATC	2 cut(s)	52, 93
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	1 cut(s)	555
BspANI	GGCC	3 cut(s)	17, 264, 474
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	3 cut(s)	48, 287, 415
BspMI	ACCTGC	1 cut(s)	67
BspOI	GCTAGC	1 cut(s)	302
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	2 cut(s)	46, 413
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	118, 408
BssECI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
BssMI	GATC	2 cut(s)	52, 93
BssNI	GRCGYC	1 cut(s)	414
BssT1I	CCWWGG	2 cut(s)	18, 278
Bst2UI	CCWGG	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	192
BstACI	GRCGYC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	300
BstDSI	CCRYGG	2 cut(s)	259, 278
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	55, 96
BstMAI	GTCTC	2 cut(s)	194, 209
BstMBI	GATC	2 cut(s)	52, 93
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 313, 413, 420
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	3 cut(s)	85, 397, 398
BstSFI	CTRYAG	1 cut(s)	418
BstSLI	GKGCMC	1 cut(s)	49
BstV2I	GAAGAC	2 cut(s)	158, 551
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	3 cut(s)	17, 264, 474
BtgI	CCRYGG	2 cut(s)	259, 278
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	111, 224, 415
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	300
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	286
Cfr9I	CCCGGG	1 cut(s)	398
CviAII	CATG	6 cut(s)	76, 140, 279, 304, 374, 460
CviJI	RGCY	7 cut(s)	17, 264, 302, 365, 450, 474, 502
CviKI_1	RGCY	7 cut(s)	17, 264, 302, 365, 450, 474, 502
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	2 cut(s)	54, 95
DpnII	GATC	2 cut(s)	52, 93
DriI	GACNNNNNGTC	2 cut(s)	159, 234
EaeI	YGGCCR	1 cut(s)	262
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	2 cut(s)	159, 234
EarI	CTCTTC	1 cut(s)	192
Ecl136II	GAGCTC	1 cut(s)	502
Eco130I	CCWWGG	2 cut(s)	18, 278
Eco24I	GRGCYC	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	2 cut(s)	209, 331
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	502
Eco88I	CYCGRG	2 cut(s)	180, 398
EcoICRI	GAGCTC	1 cut(s)	502
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	85
EcoRV	GATATC	2 cut(s)	209, 331
EcoT14I	CCWWGG	2 cut(s)	18, 278
EcoT38I	GRGCYC	1 cut(s)	504
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
ErhI	CCWWGG	2 cut(s)	18, 278
FaeI	CATG	6 cut(s)	79, 143, 282, 307, 377, 463
FaqI	GGGAC	3 cut(s)	147, 264, 299
FatI	CATG	6 cut(s)	75, 139, 278, 303, 373, 459
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	2 cut(s)	290, 299
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	17, 264, 474
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	79, 143, 282, 307, 377, 463
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	2 cut(s)	442, 526
HindII	GTYRAC	2 cut(s)	442, 526
HindIII	AAGCTT	1 cut(s)	448
HinfI	GANTC	4 cut(s)	118, 154, 252, 293
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	2 cut(s)	197, 421
Hpy166II	GTNNAC	3 cut(s)	360, 442, 526
Hpy188III	TCNNGA	4 cut(s)	140, 164, 212, 541
Hpy8I	GTNNAC	3 cut(s)	360, 442, 526
HpyAV	CCTTC	2 cut(s)	371, 485
HpyCH4V	TGCA	3 cut(s)	31, 111, 172
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 313, 413, 420
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	6 cut(s)	79, 143, 282, 307, 377, 463
HspAI	GCGC	1 cut(s)	414
KasI	GGCGCC	1 cut(s)	413
Kzo9I	GATC	2 cut(s)	52, 93
MaeI	CTAG	2 cut(s)	290, 299
MaeIII	GTNAC	2 cut(s)	337, 344
MalI	GATC	2 cut(s)	54, 95
MboI	GATC	2 cut(s)	52, 93
MboII	GAAGA	3 cut(s)	163, 209, 556
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	49, 504
MluCI	AATT	2 cut(s)	105, 239
Mly113I	GGCGCC	1 cut(s)	414
MlyI	GAGTC	3 cut(s)	148, 246, 287
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	3 cut(s)	176, 467, 508
MseI	TTAA	2 cut(s)	243, 519
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	3 cut(s)	87, 399, 400
MvaI	CCWGG	1 cut(s)	87
MwoI	GCNNNNNNNGC	4 cut(s)	304, 313, 413, 420
NarI	GGCGCC	1 cut(s)	414
NciI	CCSGG	2 cut(s)	399, 400
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	2 cut(s)	52, 93
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	6 cut(s)	79, 143, 282, 307, 377, 463
NlaIV	GGNNCC	3 cut(s)	48, 287, 415
NmuCI	GTSAC	1 cut(s)	344
PaeR7I	CTCGAG	1 cut(s)	180
PagI	TCATGA	1 cut(s)	139
PfeI	GAWTC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	3 cut(s)	148, 246, 287
PluTI	GGCGCC	1 cut(s)	417
PpsI	GAGTC	3 cut(s)	148, 246, 287
PpuMI	RGGWCCY	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	48, 287, 415
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PspXI	VCTCGAGB	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	93
SacI	GAGCTC	1 cut(s)	504
SaqAI	TTAA	2 cut(s)	243, 519
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	2 cut(s)	52, 93
Sau96I	GGNCC	1 cut(s)	286
SchI	GAGTC	3 cut(s)	148, 246, 287
ScrFI	CCNGG	3 cut(s)	87, 399, 400
SduI	GDGCHC	2 cut(s)	49, 504
SfcI	CTRYAG	1 cut(s)	418
SfoI	GGCGCC	1 cut(s)	415
Sfr274I	CTCGAG	1 cut(s)	180
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	180
SmaI	CCCGGG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	105, 239
SsiI	CCGC	1 cut(s)	555
SspDI	GGCGCC	1 cut(s)	413
SspMI	CTAG	2 cut(s)	290, 299
SstI	GAGCTC	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	85, 397, 398
StyI	CCWWGG	2 cut(s)	18, 278
TaqI	TCGA	1 cut(s)	181
TasI	AATT	2 cut(s)	105, 239
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	1 cut(s)	118
Tru1I	TTAA	2 cut(s)	243, 519
Tru9I	TTAA	2 cut(s)	243, 519
TscAI	CASTG	3 cut(s)	118, 231, 415
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	128, 390
TspMI	CCCGGG	1 cut(s)	398
TspRI	CASTG	3 cut(s)	118, 231, 415
VpaK11BI	GGWCC	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	180
XmaI	CCCGGG	1 cut(s)	398
XspI	CTAG	2 cut(s)	290, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.