Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0011495

Physical Location & Seq

Genomic Coordinates Reverse (-)

18647349 .. 18649298

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g16370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGTTGGTGTTGGCCTTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTGCCTGCAAAGTTCAAGTCCATGCTTGTTCCTGGCAAGATCCAGCACATCATTTGCACTGGAAATCTTTGTATCAAAGAAGTTCATGACTACTTGAAGACACTTTGTCCCGACTTGCATATTACTCGAGGTGAGTATGATGAAGAGACAAAATACCCAGAGACCAAAACACTAACCATTGGTCAGTTCAAGCTAGGGCTGTGTCATGGTCACCAGGTTATTCCATGGGGAGACCTAGACTCACTAGCCATGCTTCAGAGGCAGTTGGATGTAGACATCCTTGTGACAGGCCACACCCATCAGTTCACAGCGTACAAACATGAAGGAGGTGTCGTTATAAACCCAGGGTCTGCCAGCGGTGCTTATAGTAGCATCACCTATGATGTCAACCCGAGCTTTGTCCTCATGGACATTGATGGTCTTCGTGTGGTTGTTTATGTCTACGAACTCATCGATGGAGAGGTTAAGGTTGACAAGATTGATTTCAAGAAGACAACTGCCGCTACCCACTCCGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001881 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0023051 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042886 GO:0043112 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044260 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Metallophos_2

Protein Analysis

192

Amino Acids

21.19

Weight (kDa)

6.02

Isoelectric Point (pI)

22.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos_2	PF12850	4 - 157	1.9e-22	Calcineurin-like phosphoesterase superfamily domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47810 AT3G47810 AT3G47810
fragaria_vesca	FvH4_5g15250
malus_domestica	MD06G1190100.v1.1 MD14G1197000.v1.1
prunus_persica	Prupe.5G189200_v2.0.a1
pyrus_communis	pycom06g16880 pycom14g16370
rosa_chinensis	RchiOBHm_Chr7g0180841
rosa_laevigata	RLG00000005226
rosa_multiflora	Rmu_sc0007457.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272480
rosa_rugosa	Rorug06G0436800 Rorug06G0436900
rosa_samantha	Rh7AG038400 Rh7BG038000 Rh7CG039600 Rh7DG038100
rosa_wichuraiana	Rw7G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB1I	GGYRCC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	2 cut(s)	327, 495
AciI	CCGC	3 cut(s)	411, 555, 567
AclWI	GGATC	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	368
AgsI	TTSAA	4 cut(s)	70, 151, 244, 541
AhdI	GACNNNNNGTC	1 cut(s)	159
AjnI	CCWGG	3 cut(s)	85, 267, 397
AluBI	AGCT	2 cut(s)	247, 450
AluI	AGCT	2 cut(s)	247, 450
Alw26I	GTCTC	3 cut(s)	194, 209, 279
AlwI	GGATC	1 cut(s)	88
AlwNI	CAGNNNCTG	1 cut(s)	404
Ama87I	CYCGRG	2 cut(s)	180, 445
AoxI	GGCC	2 cut(s)	15, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AsuHPI	GGTGA	3 cut(s)	197, 257, 421
AvaI	CYCGRG	2 cut(s)	180, 445
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	46
BbsI	GAAGAC	3 cut(s)	158, 467, 551
BccI	CCATC	3 cut(s)	360, 464, 503
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	3 cut(s)	87, 269, 399
BcoDI	GTCTC	3 cut(s)	194, 209, 279
BfaI	CTAG	3 cut(s)	248, 290, 299
BisI	GCNGC	1 cut(s)	555
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	3 cut(s)	87, 269, 399
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmeT110I	CYCGRG	2 cut(s)	180, 445
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	87, 269, 399
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	3 cut(s)	158, 467, 551
Bsa29I	ATCGAT	1 cut(s)	507
BsaI	GGTCTC	2 cut(s)	209, 279
BsaJI	CCNNGG	4 cut(s)	18, 278, 397, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	3 cut(s)	87, 269, 399
BseCI	ATCGAT	1 cut(s)	507
BseDI	CCNNGG	4 cut(s)	18, 278, 397, 398
BseGI	GGATG	2 cut(s)	328, 330
BseNI	ACTGG	1 cut(s)	118
BseSI	GKGCMC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	17, 345
BshNI	GGYRCC	1 cut(s)	46
BshVI	ATCGAT	1 cut(s)	507
BsiHKCI	CYCGRG	2 cut(s)	180, 445
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	3 cut(s)	194, 209, 279
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	17, 345
Bso31I	GGTCTC	2 cut(s)	209, 279
BsoBI	CYCGRG	2 cut(s)	180, 445
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	52, 93
Bsp19I	CCATGG	1 cut(s)	278
BspACI	CCGC	3 cut(s)	411, 555, 567
BspANI	GGCC	2 cut(s)	17, 345
BspDI	ATCGAT	1 cut(s)	507
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	2 cut(s)	209, 279
BsrBI	CCGCTC	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	4 cut(s)	18, 278, 397, 398
BssMI	GATC	2 cut(s)	52, 93
BssT1I	CCWWGG	2 cut(s)	18, 278
Bst2UI	CCWGG	3 cut(s)	87, 269, 399
Bst6I	CTCTTC	1 cut(s)	192
BstC8I	GCNNGC	2 cut(s)	60, 409
BstDSI	CCRYGG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	328, 330
BstKTI	GATC	2 cut(s)	55, 96
BstMAI	GTCTC	3 cut(s)	194, 209, 279
BstMBI	GATC	2 cut(s)	52, 93
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 413
BstNI	CCWGG	3 cut(s)	87, 269, 399
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	3 cut(s)	85, 267, 397
BstSLI	GKGCMC	1 cut(s)	49
BstV2I	GAAGAC	3 cut(s)	158, 467, 551
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
Bsu15I	ATCGAT	1 cut(s)	507
BsuRI	GGCC	2 cut(s)	17, 345
BsuTUI	ATCGAT	1 cut(s)	507
BtgI	CCRYGG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	328, 330
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	60, 409
CaiI	CAGNNNCTG	1 cut(s)	404
CciI	TCATGA	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	507
CsiI	ACCWGGT	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	7 cut(s)	76, 140, 260, 279, 304, 374, 460
CviJI	RGCY	6 cut(s)	17, 247, 253, 302, 345, 450
CviKI_1	RGCY	6 cut(s)	17, 247, 253, 302, 345, 450
CviQI	GTAC	1 cut(s)	367
DpnI	GATC	2 cut(s)	54, 95
DpnII	GATC	2 cut(s)	52, 93
DriI	GACNNNNNGTC	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EarI	CTCTTC	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	18, 278
Eco31I	GGTCTC	2 cut(s)	209, 279
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	2 cut(s)	180, 445
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	85, 267, 397
EcoT14I	CCWWGG	2 cut(s)	18, 278
ErhI	CCWWGG	2 cut(s)	18, 278
FaeI	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	7 cut(s)	75, 139, 259, 278, 303, 373, 459
FblI	GTMKAC	2 cut(s)	327, 495
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	2 cut(s)	317, 335
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	3 cut(s)	248, 290, 299
GluI	GCNGC	1 cut(s)	555
HaeIII	GGCC	2 cut(s)	17, 345
Hin1II	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
HincII	GTYRAC	2 cut(s)	442, 526
HindII	GTYRAC	2 cut(s)	442, 526
HinfI	GANTC	1 cut(s)	293
HphI	GGTGA	3 cut(s)	197, 257, 421
Hpy166II	GTNNAC	5 cut(s)	328, 360, 442, 496, 526
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	3 cut(s)	140, 164, 541
Hpy8I	GTNNAC	5 cut(s)	328, 360, 442, 496, 526
HpyAV	CCTTC	1 cut(s)	371
HpyCH4V	TGCA	4 cut(s)	31, 62, 111, 172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 413
Hsp92II	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
Kzo9I	GATC	2 cut(s)	52, 93
LweI	GCATC	1 cut(s)	435
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	3 cut(s)	248, 290, 299
MaeIII	GTNAC	2 cut(s)	263, 337
MalI	GATC	2 cut(s)	54, 95
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	2 cut(s)	52, 93
MboII	GAAGA	4 cut(s)	163, 209, 467, 556
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	176, 306, 374, 467, 508
MseI	TTAA	1 cut(s)	519
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	411
MspR9I	CCNGG	3 cut(s)	87, 269, 399
MvaI	CCWGG	3 cut(s)	87, 269, 399
MwoI	GCNNNNNNNGC	2 cut(s)	313, 413
NcoI	CCATGG	1 cut(s)	278
NdeII	GATC	2 cut(s)	52, 93
NlaIII	CATG	7 cut(s)	79, 143, 263, 282, 307, 377, 463
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	263, 337
PaeR7I	CTCGAG	1 cut(s)	180
PagI	TCATGA	1 cut(s)	139
PasI	CCCWGGG	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	85, 267, 397
PspEI	GGTNACC	1 cut(s)	263
PspGI	CCWGG	3 cut(s)	85, 267, 397
PspN4I	GGNNCC	1 cut(s)	48
PspXI	VCTCGAGB	1 cut(s)	180
PstNI	CAGNNNCTG	1 cut(s)	404
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	2 cut(s)	52, 93
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	87, 269, 399
SduI	GDGCHC	1 cut(s)	49
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
SsiI	CCGC	3 cut(s)	411, 555, 567
SspMI	CTAG	3 cut(s)	248, 290, 299
StyD4I	CCNGG	3 cut(s)	85, 267, 397
StyI	CCWWGG	2 cut(s)	18, 278
TaqI	TCGA	2 cut(s)	181, 507
TauI	GCSGC	1 cut(s)	557
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	2 cut(s)	263, 337
Tsp45I	GTSAC	2 cut(s)	263, 337
TspDTI	ATGAA	3 cut(s)	128, 210, 390
TspRI	CASTG	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	180
XmiI	GTMKAC	2 cut(s)	327, 495
XspI	CTAG	3 cut(s)	248, 290, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.