Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011495

Physical Location & Seq

Genomic Coordinates Reverse (-)

20978179 .. 20980120

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGTTGGTGTTGGCCTTGGGGGATTTGCACATACCCCACAGGGCACCTGATCTGCCTGCAAAATTCAAGTCCATGCTTGTTCCTGGCGAGATCCAGCACATCATCTGCACTGGAAATCTTTGTATCAAAGAGGTTCATGATTACTTGAAGACTCTTTGTCCCGACTTGCATATTACTCGAGGTGAGTATGATGAGGAGACAAAGTATCCAGAGACCAAAACTCTAACAATCGGTCAGTTCAAGCTAGGGCTGTGCCATGGCCACCAGGTTATTCCGTGGGGAGACCTAGATTCACTAGCCATGCTTCAGAGGCAGTTGGATGTAGATATCCTTGTGACAGGCCACACCCATCAGTTCACCGCATACAAACATGAAGGAGGTGTCGTTATAAACCCAGGGTCTGCCAGCGGCGCTTATAGCAGCATCACCTATGACGTCAACCCGAGCTTCGTCCTCATGGACATTGATGGTCTTCGTGTGGTTGTTTATGTCTACGAACTTATTGATGGAGAGGTTAAGGTTGACAAGATTGATTTCAAGAAGACAGCCGCTGCTACCCACTCCGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0001881 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0023051 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042886 GO:0043112 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044260 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046872 GO:0046907 GO:0046914 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Metallophos_2

Protein Analysis

192

Amino Acids

21.16

Weight (kDa)

5.78

Isoelectric Point (pI)

23.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47810 AT3G47810 AT3G47810
fragaria_vesca	FvH4_5g15250
malus_domestica	MD06G1190100.v1.1 MD14G1197000.v1.1
prunus_persica	Prupe.5G189200_v2.0.a1
pyrus_communis	pycom06g16880 pycom14g16370
rosa_chinensis	RchiOBHm_Chr7g0180841
rosa_laevigata	RLG00000005226
rosa_multiflora	Rmu_sc0007457.1_g000004
rosa_roxburghii	Rroxscaffold_3G00272480
rosa_rugosa	Rorug06G0436800 Rorug06G0436900
rosa_samantha	Rh7AG038400 Rh7BG038000 Rh7CG039600 Rh7DG038100
rosa_wichuraiana	Rw7G003160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AatII	GACGTC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	46
AccBSI	CCGCTC	1 cut(s)	569
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	4 cut(s)	363, 411, 552, 567
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	262
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	70, 151, 244, 541
AhdI	GACNNNNNGTC	1 cut(s)	159
AjnI	CCWGG	3 cut(s)	85, 267, 397
AluBI	AGCT	2 cut(s)	247, 450
AluI	AGCT	2 cut(s)	247, 450
Alw26I	GTCTC	3 cut(s)	194, 209, 279
AlwI	GGATC	1 cut(s)	88
AlwNI	CAGNNNCTG	2 cut(s)	404, 554
Ama87I	CYCGRG	2 cut(s)	180, 445
AoxI	GGCC	3 cut(s)	15, 262, 343
ApeKI	GCWGC	2 cut(s)	423, 554
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AspLEI	GCGC	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	197, 352, 421
AvaI	CYCGRG	2 cut(s)	180, 445
BaeGI	GKGCMC	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	264
BanI	GGYRCC	1 cut(s)	46
BbsI	GAAGAC	3 cut(s)	158, 467, 551
BbvI	GCAGC	2 cut(s)	435, 541
BccI	CCATC	3 cut(s)	360, 464, 503
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	3 cut(s)	87, 269, 399
BciVI	GTATCC	1 cut(s)	219
BcoDI	GTCTC	3 cut(s)	194, 209, 279
BfaI	CTAG	3 cut(s)	248, 290, 299
BfoI	RGCGCY	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	4 cut(s)	412, 424, 552, 555
BlsI	GCNGC	4 cut(s)	413, 425, 553, 556
Bme1390I	CCNGG	3 cut(s)	87, 269, 399
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmeT110I	CYCGRG	2 cut(s)	180, 445
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	3 cut(s)	87, 269, 399
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	3 cut(s)	158, 467, 551
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	209, 279
BsaJI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 372, 402
Bse1I	ACTGG	1 cut(s)	118
BseBI	CCWGG	3 cut(s)	87, 269, 399
BseDI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
BseGI	GGATG	1 cut(s)	328
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	2 cut(s)	435, 541
BsgI	GTGCAG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	17, 264, 345
BshNI	GGYRCC	1 cut(s)	46
BsiHKCI	CYCGRG	2 cut(s)	180, 445
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	3 cut(s)	194, 209, 279
BsmFI	GGGAC	1 cut(s)	147
BsnI	GGCC	3 cut(s)	17, 264, 345
Bso31I	GGTCTC	2 cut(s)	209, 279
BsoBI	CYCGRG	2 cut(s)	180, 445
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	52, 93
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	4 cut(s)	363, 411, 552, 567
BspANI	GGCC	3 cut(s)	17, 264, 345
BspHI	TCATGA	1 cut(s)	139
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	46
BspTNI	GGTCTC	2 cut(s)	209, 279
BsrBI	CCGCTC	1 cut(s)	569
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	5 cut(s)	18, 259, 278, 397, 398
BssMI	GATC	2 cut(s)	52, 93
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	2 cut(s)	18, 259
Bst2UI	CCWGG	3 cut(s)	87, 269, 399
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	2 cut(s)	60, 409
BstDSI	CCRYGG	2 cut(s)	259, 278
BstF5I	GGATG	1 cut(s)	328
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	55, 96
BstMAI	GTCTC	3 cut(s)	194, 209, 279
BstMBI	GATC	2 cut(s)	52, 93
BstMWI	GCNNNNNNNGC	3 cut(s)	313, 413, 420
BstNI	CCWGG	3 cut(s)	87, 269, 399
BstSCI	CCNGG	3 cut(s)	85, 267, 397
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	435, 541
BstV2I	GAAGAC	3 cut(s)	158, 467, 551
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	219
BsuRI	GGCC	3 cut(s)	17, 264, 345
BtgI	CCRYGG	2 cut(s)	259, 278
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	2 cut(s)	60, 409
CaiI	CAGNNNCTG	2 cut(s)	404, 554
CciI	TCATGA	1 cut(s)	139
CfoI	GCGC	1 cut(s)	416
CsiI	ACCWGGT	1 cut(s)	267
CviAII	CATG	6 cut(s)	76, 140, 260, 304, 374, 460
CviJI	RGCY	8 cut(s)	17, 247, 253, 264, 302, 345, 450, 551
CviKI_1	RGCY	8 cut(s)	17, 247, 253, 264, 302, 345, 450, 551
DpnI	GATC	2 cut(s)	54, 95
DpnII	GATC	2 cut(s)	52, 93
DriI	GACNNNNNGTC	1 cut(s)	159
EaeI	YGGCCR	1 cut(s)	262
Eam1105I	GACNNNNNGTC	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	18, 259
Eco31I	GGTCTC	2 cut(s)	209, 279
Eco32I	GATATC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	2 cut(s)	180, 445
EcoRII	CCWGG	3 cut(s)	85, 267, 397
EcoRV	GATATC	1 cut(s)	331
EcoT14I	CCWWGG	2 cut(s)	18, 259
ErhI	CCWWGG	2 cut(s)	18, 259
FaeI	CATG	6 cut(s)	79, 143, 263, 307, 377, 463
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	6 cut(s)	75, 139, 259, 303, 373, 459
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	412, 424, 552, 555
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	412, 424, 552, 555
FspBI	CTAG	3 cut(s)	248, 290, 299
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	4 cut(s)	412, 424, 552, 555
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	3 cut(s)	17, 264, 345
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	79, 143, 263, 307, 377, 463
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HincII	GTYRAC	2 cut(s)	442, 526
HindII	GTYRAC	2 cut(s)	442, 526
HinfI	GANTC	2 cut(s)	154, 293
HphI	GGTGA	3 cut(s)	197, 352, 421
Hpy166II	GTNNAC	4 cut(s)	360, 442, 496, 526
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	4 cut(s)	140, 164, 212, 541
Hpy8I	GTNNAC	4 cut(s)	360, 442, 496, 526
HpyAV	CCTTC	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	4 cut(s)	31, 62, 111, 172
HpyF10VI	GCNNNNNNNGC	3 cut(s)	313, 413, 420
HpySE526I	ACGT	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	6 cut(s)	79, 143, 263, 307, 377, 463
HspAI	GCGC	1 cut(s)	414
Kzo9I	GATC	2 cut(s)	52, 93
Lsp1109I	GCAGC	2 cut(s)	435, 541
LweI	GCATC	1 cut(s)	435
MabI	ACCWGGT	1 cut(s)	267
MaeI	CTAG	3 cut(s)	248, 290, 299
MaeII	ACGT	1 cut(s)	438
MaeIII	GTNAC	1 cut(s)	337
MalI	GATC	2 cut(s)	54, 95
MbiI	CCGCTC	1 cut(s)	569
MboI	GATC	2 cut(s)	52, 93
MboII	GAAGA	3 cut(s)	163, 467, 556
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	264
MluCI	AATT	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	264
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	7 cut(s)	127, 176, 190, 306, 374, 467, 508
Mox20I	TGGCCA	1 cut(s)	264
MscI	TGGCCA	1 cut(s)	264
MseI	TTAA	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	411, 554
MspR9I	CCNGG	3 cut(s)	87, 269, 399
MvaI	CCWGG	3 cut(s)	87, 269, 399
MwoI	GCNNNNNNNGC	3 cut(s)	313, 413, 420
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	2 cut(s)	52, 93
NlaIII	CATG	6 cut(s)	79, 143, 263, 307, 377, 463
NlaIV	GGNNCC	1 cut(s)	48
NmuCI	GTSAC	1 cut(s)	337
PaeR7I	CTCGAG	1 cut(s)	180
PagI	TCATGA	1 cut(s)	139
PasI	CCCWGGG	1 cut(s)	398
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	413, 425, 553, 556
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	392
Psp6I	CCWGG	3 cut(s)	85, 267, 397
PspGI	CCWGG	3 cut(s)	85, 267, 397
PspN4I	GGNNCC	1 cut(s)	48
PspXI	VCTCGAGB	1 cut(s)	180
PstNI	CAGNNNCTG	2 cut(s)	404, 554
PsuI	RGATCY	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	519
SatI	GCNGC	4 cut(s)	412, 424, 552, 555
Sau3AI	GATC	2 cut(s)	52, 93
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	87, 269, 399
SduI	GDGCHC	1 cut(s)	49
SexAI	ACCWGGT	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	4 cut(s)	363, 411, 552, 567
SspMI	CTAG	3 cut(s)	248, 290, 299
StyD4I	CCNGG	3 cut(s)	85, 267, 397
StyI	CCWWGG	2 cut(s)	18, 259
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	1 cut(s)	181
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	65
TauI	GCSGC	2 cut(s)	414, 554
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	1 cut(s)	519
Tru9I	TTAA	1 cut(s)	519
TscAI	CASTG	1 cut(s)	118
TseFI	GTSAC	1 cut(s)	337
TseI	GCWGC	2 cut(s)	423, 554
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	128, 390
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	118
XapI	RAATTY	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	180
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	3 cut(s)	248, 290, 299
ZraI	GACGTC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.