FvH4_5g15830

HIPL1 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0019130
Physical Location & Seq
Forward (+)
8960036 .. 8962109
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g15830.t1

Sequence Viewer

Length: 1386 bp
ATGAAATCACACCAGTCTAAAGTTGGAGATTTCAGTGACTTCTGCACAAAGCTGTGGAATACATGTGGGAACATATCCTTATTGAGCTCTCCATTTGCTCCAGCCACTCAAGGCAGAACGACTGATCATTGGCACTCAAAAGAAGACTTCTGTGAAGCATTTGGTGGATCAGAAGATGCTGTGTGTTTTAATGGTGAATCAGTATCATTTAGTCAAGTAGATGCTCCACCTCCTCCAGCTGGTCTGTGCCTTGAGAAAATTGGAAATGGGGCTTATATCAATCTAGTTCCTCATCCGGATGGTTCCAACCGCGCATTTGTGTCTAACCAACAAGGTCAGATATGGTTGGTAACTATTCCTCATGAAGGATCAAGTGGGATTTTGGGAATCAATGATTCTGAACCTTTTCTGGACATTACTGATCAAGTGCTATATGATACTGAGTTTGGTCTAATGAGTATGGCATTTCATCCGAACTTTGTGAACAATGGCCGCTTCTTTCTATCATTCAACTGTGATAAGATAAAACATGCAGGCTGTTCAGGCAGATGTTCATGTAATACAGATGTGAACTGTGACCCTTCAAAGCTTTCTGCTGATGGTGGGGTGCAGCCCTGTCAATACCACATTGTTGTTGCTGAATTTACAGTTAATGGTACAGCACTGGAAGCTTCCATGGCAAAAAGCTCAAATCCATCAGAAGTGAGAAGGATATTCACAATGGGGCTTCCTTATAAAGGAGGTCATGCAGGTCAAATTCTTTTTGGACCTGCAGATGGTTATCTGTACCTCACGATGGGAGACGGTTCACATACAGATGACCCTTACAATTTTGCACAGAACAAGAAGTCCTTGCTTGGGAAAATTATGAGGCTTGACATAGATAACATACCAAGACGTGCTGAATCTGCCTCTATTACAGGTAGCTATTTCTACCGGTCCATGACTGATCCGTGCATGTATAAGAGGTATCTCTACATGGATTTGTATGCTGAAGCATTATGGGCAGGCACTGAAAACCCTGAAAACAGTGGGAACTTCTCGACTACCAAGATTCCATTCAGATGTGCTCATGACTCTCTGATGCAATGTAACATTGTGGCAGGAGGTTCTACTCCTTCCTTGGGGTATGTATTCTCATTTGCTGAAGACAACAAGAAGGATGTTTATGTTCTAACAAGCACCGGTGTCTATAGAGTCACAAGACCAAGCCGCTGCAATTTTACATGTGCTAAGGAACATGTAGTTGATTTGGGGACTCATCGACAGAGTTCTGATGCCTCCATGTCAAGAAAAATGTTCAAGGGAAGCAAAGATATTGCATTTCTTCTTTTGTTTCTTGTTTTGTACCCTGGATTTGATCTTGTGAATCATTACTTATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GSDH

Protein Analysis

462

Amino Acids

50.68

Weight (kDa)

5.86

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSDH PF07995 98 - 295 6.4e-10 Glucose / Sorbosone dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15830
prunus_persica Prupe.5G184100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0180301
rosa_multiflora Rmu_co8475727.1_g000001 Rmu_sc0011963.1_g000016
rosa_samantha Rh7AG032400 Rh7CG034200 Rh7DG032900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 735
Acc36I ACCTGC 2 cut(s) 740, 778
AccII CGCG 1 cut(s) 312
AccIII TCCGGA 1 cut(s) 295
AciI CCGC 3 cut(s) 310, 493, 1213
AclWI GGATC 3 cut(s) 175, 376, 944
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 2 cut(s) 641, 756
AcuI CTGAAG 2 cut(s) 1014, 1167
AfaI GTAC 3 cut(s) 658, 788, 1349
AfiI CCNNNNNNNGG 7 cut(s) 239, 365, 737, 776, 796, 858, 1124
AflIII ACRYGT 3 cut(s) 62, 1226, 1240
AgeI ACCGGT 2 cut(s) 936, 1184
AgsI TTSAA 3 cut(s) 511, 585, 1303
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 1 cut(s) 1351
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AloI GAACNNNNNNTCC 2 cut(s) 833, 865
AluBI AGCT 7 cut(s) 52, 87, 239, 589, 671, 687, 927
AluI AGCT 7 cut(s) 52, 87, 239, 589, 671, 687, 927
Alw21I GWGCWC 2 cut(s) 89, 1072
Alw26I GTCTC 1 cut(s) 795
AlwI GGATC 3 cut(s) 175, 376, 944
AlwNI CAGNNNCTG 1 cut(s) 1013
Aor13HI TCCGGA 1 cut(s) 295
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 610, 1215
ApoI RAATTY 2 cut(s) 641, 756
AsiGI ACCGGT 2 cut(s) 936, 1184
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 2 cut(s) 767, 939
AsuHPI GGTGA 1 cut(s) 206
AvaII GGWCC 2 cut(s) 767, 939
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 150, 1155
Bbv12I GWGCWC 2 cut(s) 89, 1072
BbvI GCAGC 2 cut(s) 622, 1202
BccI CCATC 5 cut(s) 293, 593, 703, 770, 790
BciT130I CCWGG 1 cut(s) 1353
BclI TGATCA 2 cut(s) 124, 421
BcoDI GTCTC 1 cut(s) 795
BfaI CTAG 1 cut(s) 284
BfmI CTRYAG 2 cut(s) 771, 1192
BfuAI ACCTGC 2 cut(s) 740, 778
BisI GCNGC 4 cut(s) 493, 611, 1213, 1216
BlsI GCNGC 4 cut(s) 494, 612, 1214, 1217
Bme1390I CCNGG 1 cut(s) 1353
Bme18I GGWCC 2 cut(s) 767, 939
BmgBI CACGTC 1 cut(s) 899
BmgT120I GGNCC 2 cut(s) 767, 939
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 1 cut(s) 1353
BmsI GCATC 4 cut(s) 166, 211, 1074, 1267
BpiI GAAGAC 2 cut(s) 150, 1155
BpmI CTGGAG 2 cut(s) 84, 219
Bpu10I CCTNAGC 1 cut(s) 1233
BpuEI CTTGAG 2 cut(s) 93, 272
BsaBI GATNNNNATC 1 cut(s) 780
BsaJI CCNNGG 3 cut(s) 675, 1122, 1351
BsaWI WCCGGW 3 cut(s) 295, 936, 1184
Bsc4I CCNNNNNNNGG 7 cut(s) 239, 365, 737, 776, 796, 858, 1124
Bse118I RCCGGY 2 cut(s) 936, 1184
Bse1I ACTGG 2 cut(s) 13, 669
Bse3DI GCAATG 1 cut(s) 1094
Bse8I GATNNNNATC 1 cut(s) 780
BseAI TCCGGA 1 cut(s) 295
BseBI CCWGG 1 cut(s) 1353
BseDI CCNNGG 3 cut(s) 675, 1122, 1351
BseGI GGATG 4 cut(s) 292, 304, 469, 1168
BseJI GATNNNNATC 1 cut(s) 780
BseLI CCNNNNNNNGG 7 cut(s) 239, 365, 737, 776, 796, 858, 1124
BseMI GCAATG 1 cut(s) 1094
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 13, 669
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 622, 1202
BsgI GTGCAG 2 cut(s) 28, 629
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 1 cut(s) 492
BshTI ACCGGT 2 cut(s) 936, 1184
BsiHKAI GWGCWC 2 cut(s) 89, 1072
BsiSI CCGG 3 cut(s) 296, 937, 1185
BslFI GGGAC 1 cut(s) 1270
BslI CCNNNNNNNGG 7 cut(s) 239, 365, 737, 776, 796, 858, 1124
BsmAI GTCTC 1 cut(s) 795
BsmBI CGTCTC 1 cut(s) 795
BsmFI GGGAC 1 cut(s) 1270
BsnI GGCC 1 cut(s) 492
Bsp1286I GDGCHC 2 cut(s) 89, 1072
Bsp13I TCCGGA 1 cut(s) 295
Bsp143I GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 3 cut(s) 310, 493, 1213
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 1 cut(s) 433
BspEI TCCGGA 1 cut(s) 295
BspFNI CGCG 1 cut(s) 312
BspHI TCATGA 2 cut(s) 361, 1072
BspLI GGNNCC 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 775
BspMI ACCTGC 2 cut(s) 740, 778
BspPI GGATC 3 cut(s) 175, 376, 944
BsrDI GCAATG 1 cut(s) 1094
BsrFI RCCGGY 2 cut(s) 936, 1184
BsrI ACTGG 2 cut(s) 13, 669
BssAI RCCGGY 2 cut(s) 936, 1184
BssECI CCNNGG 3 cut(s) 675, 1122, 1351
BssMI GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
BssT1I CCWWGG 2 cut(s) 675, 1122
Bst2UI CCWGG 1 cut(s) 1353
Bst4CI ACNGT 5 cut(s) 515, 575, 649, 806, 1031
BstC8I GCNNGC 2 cut(s) 535, 1009
BstDEI CTNAG 2 cut(s) 441, 1233
BstDSI CCRYGG 1 cut(s) 675
BstENI CCTNNNNNAGG 2 cut(s) 363, 735
BstF5I GGATG 4 cut(s) 292, 304, 469, 1168
BstFNI CGCG 1 cut(s) 312
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 6 cut(s) 127, 170, 371, 424, 952, 1363
BstMAI GTCTC 1 cut(s) 795
BstMBI GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
BstMWI GCNNNNNNNGC 5 cut(s) 543, 668, 677, 908, 1004
BstNI CCWGG 1 cut(s) 1353
BstNSI RCATGY 5 cut(s) 66, 533, 961, 1230, 1244
BstSCI CCNGG 1 cut(s) 1351
BstSFI CTRYAG 2 cut(s) 771, 1192
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 2 cut(s) 622, 1202
BstV2I GAAGAC 2 cut(s) 150, 1155
BsuRI GGCC 1 cut(s) 492
BtgI CCRYGG 1 cut(s) 675
BtrI CACGTC 1 cut(s) 899
BtsCI GGATG 4 cut(s) 292, 304, 469, 1168
BtsIMutI CAGTG 4 cut(s) 40, 662, 1011, 1036
BveI ACCTGC 2 cut(s) 740, 778
Cac8I GCNNGC 2 cut(s) 535, 1009
CaiI CAGNNNCTG 1 cut(s) 1013
CciI TCATGA 2 cut(s) 361, 1072
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 2 cut(s) 936, 1184
Cfr13I GGNCC 2 cut(s) 767, 939
Csp6I GTAC 3 cut(s) 657, 787, 1348
CspAI ACCGGT 2 cut(s) 936, 1184
CviQI GTAC 3 cut(s) 657, 787, 1348
DdeI CTNAG 2 cut(s) 441, 1233
DpnI GATC 6 cut(s) 126, 169, 370, 423, 951, 1362
DpnII GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
EaeI YGGCCR 1 cut(s) 490
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 2 cut(s) 675, 1122
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 767, 939
Eco53kI GAGCTC 1 cut(s) 87
Eco57I CTGAAG 2 cut(s) 1014, 1167
EcoICRI GAGCTC 1 cut(s) 87
EcoNI CCTNNNNNAGG 2 cut(s) 363, 735
EcoRII CCWGG 1 cut(s) 1351
EcoT14I CCWWGG 2 cut(s) 675, 1122
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 2 cut(s) 675, 1122
Esp3I CGTCTC 1 cut(s) 795
FalI AAGNNNNNCTT 2 cut(s) 836, 868
FaqI GGGAC 1 cut(s) 1270
FbaI TGATCA 2 cut(s) 124, 421
Fnu4HI GCNGC 4 cut(s) 493, 611, 1213, 1216
FokI GGATG 4 cut(s) 279, 311, 456, 1175
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 4 cut(s) 493, 611, 1213, 1216
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 313
GluI GCNGC 4 cut(s) 493, 611, 1213, 1216
GsuI CTGGAG 2 cut(s) 84, 219
HaeIII GGCC 1 cut(s) 492
HapII CCGG 3 cut(s) 296, 937, 1185
HhaI GCGC 1 cut(s) 314
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HindIII AAGCTT 2 cut(s) 587, 669
HinfI GANTC 9 cut(s) 197, 387, 395, 905, 1054, 1076, 1197, 1258, 1369
HpaII CCGG 3 cut(s) 296, 937, 1185
HphI GGTGA 1 cut(s) 206
Hpy166II GTNNAC 3 cut(s) 484, 571, 809
Hpy188I TCNGA 8 cut(s) 172, 339, 400, 474, 700, 1064, 1083, 1276
Hpy188III TCNNGA 7 cut(s) 296, 362, 410, 793, 1042, 1073, 1290
Hpy8I GTNNAC 3 cut(s) 484, 571, 809
HpyAV CCTTC 5 cut(s) 359, 591, 702, 1128, 1153
HpyCH4III ACNGT 5 cut(s) 515, 575, 649, 806, 1031
HpyCH4IV ACGT 1 cut(s) 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 543, 668, 677, 908, 1004
HpyF3I CTNAG 2 cut(s) 441, 1233
HpySE526I ACGT 1 cut(s) 898
HspAI GCGC 1 cut(s) 312
Kpn2I TCCGGA 1 cut(s) 295
Ksp22I TGATCA 2 cut(s) 124, 421
Kzo9I GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
LmnI GCTCC 2 cut(s) 103, 229
Lsp1109I GCAGC 2 cut(s) 622, 1202
LweI GCATC 4 cut(s) 166, 211, 1074, 1267
MaeI CTAG 1 cut(s) 284
MaeII ACGT 1 cut(s) 898
MaeIII GTNAC 5 cut(s) 35, 349, 575, 1091, 1198
MalI GATC 6 cut(s) 126, 169, 370, 423, 951, 1362
MboI GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
MboII GAAGA 4 cut(s) 155, 185, 1160, 1319
MhlI GDGCHC 2 cut(s) 89, 1072
MluCI AATT 6 cut(s) 258, 641, 756, 829, 864, 1219
MlyI GAGTC 3 cut(s) 1070, 1206, 1252
MmeI TCCRAC 2 cut(s) 4, 330
MroI TCCGGA 1 cut(s) 295
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 189, 651
MslI CAYNNNNRTG 3 cut(s) 297, 816, 1063
MspA1I CMGCKG 2 cut(s) 239, 1215
MspI CCGG 3 cut(s) 296, 937, 1185
MspR9I CCNGG 1 cut(s) 1353
MvaI CCWGG 1 cut(s) 1353
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 5 cut(s) 543, 668, 677, 908, 1004
NcoI CCATGG 1 cut(s) 675
NdeII GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 3 cut(s) 35, 575, 1198
NspI RCATGY 5 cut(s) 66, 533, 961, 1230, 1244
PagI TCATGA 2 cut(s) 361, 1072
PciI ACATGT 3 cut(s) 62, 1226, 1240
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 6 cut(s) 197, 387, 395, 905, 1054, 1369
PinAI ACCGGT 2 cut(s) 936, 1184
PkrI GCNGC 4 cut(s) 494, 612, 1214, 1217
PleI GAGTC 3 cut(s) 1070, 1205, 1252
PpsI GAGTC 3 cut(s) 1070, 1205, 1252
PscI ACATGT 3 cut(s) 62, 1226, 1240
PsiI TTATAA 1 cut(s) 735
Psp124BI GAGCTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 1351
PspGI CCWGG 1 cut(s) 1351
PspN4I GGNNCC 1 cut(s) 304
PspPI GGNCC 2 cut(s) 767, 939
PstI CTGCAG 1 cut(s) 775
PstNI CAGNNNCTG 1 cut(s) 1013
PvuII CAGCTG 1 cut(s) 239
RsaI GTAC 3 cut(s) 658, 788, 1349
RsaNI GTAC 3 cut(s) 657, 787, 1348
RseI CAYNNNNRTG 3 cut(s) 297, 816, 1063
SacI GAGCTC 1 cut(s) 89
SaqAI TTAA 2 cut(s) 189, 651
SatI GCNGC 4 cut(s) 493, 611, 1213, 1216
Sau3AI GATC 6 cut(s) 124, 167, 368, 421, 949, 1360
Sau96I GGNCC 2 cut(s) 767, 939
SchI GAGTC 3 cut(s) 1070, 1206, 1252
ScrFI CCNGG 1 cut(s) 1353
SduI GDGCHC 2 cut(s) 89, 1072
SfaNI GCATC 4 cut(s) 166, 211, 1074, 1267
SfcI CTRYAG 2 cut(s) 771, 1192
SgrAI CRCCGGYG 1 cut(s) 1184
SinI GGWCC 2 cut(s) 767, 939
SmiMI CAYNNNNRTG 3 cut(s) 297, 816, 1063
SmlI CTYRAG 2 cut(s) 108, 251
SmoI CTYRAG 2 cut(s) 108, 251
Sse9I AATT 6 cut(s) 258, 641, 756, 829, 864, 1219
SsiI CCGC 3 cut(s) 310, 493, 1213
SspMI CTAG 1 cut(s) 284
SstI GAGCTC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 1351
StyI CCWWGG 2 cut(s) 675, 1122
TaaI ACNGT 5 cut(s) 515, 575, 649, 806, 1031
TaiI ACGT 1 cut(s) 901
TaqI TCGA 2 cut(s) 1043, 1264
TasI AATT 6 cut(s) 258, 641, 756, 829, 864, 1219
TauI GCSGC 2 cut(s) 495, 1215
TfiI GAWTC 6 cut(s) 197, 387, 395, 905, 1054, 1369
Tru1I TTAA 2 cut(s) 189, 651
Tru9I TTAA 2 cut(s) 189, 651
TscAI CASTG 4 cut(s) 40, 669, 1018, 1036
TseFI GTSAC 3 cut(s) 35, 575, 1198
TseI GCWGC 2 cut(s) 610, 1215
Tsp45I GTSAC 3 cut(s) 35, 575, 1198
TspDTI ATGAA 4 cut(s) 17, 378, 458, 543
TspGWI ACGGA 1 cut(s) 942
TspRI CASTG 4 cut(s) 40, 669, 1018, 1036
VpaK11BI GGWCC 2 cut(s) 767, 939
XagI CCTNNNNNAGG 2 cut(s) 363, 735
XapI RAATTY 2 cut(s) 641, 756
XceI RCATGY 5 cut(s) 66, 533, 961, 1230, 1244
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.