Rh7AG032400

HIPL1 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0019130
Physical Location & Seq
Reverse (-)
2227252 .. 2228255
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG032400.1

Sequence Viewer

Length: 795 bp
ATGTGTGCAATATGTGACCAATTTTCAGCTCAACTGTTTGAAATTGACTCGCAGCCTAGAAAGGTTCCTGTTCTGTGCAACATCACAAGTTCAATGAAATCACACCAGTCGAAAGTTGGAGATTGCGGGGACATCTGCACAAAGTTGTGGGATAAATGTGGCAACATATCCTTATTGAGTTCTCCATTTGCTCCATCCTCTCAAGGCAGAATGACTGATCATTGGCACTCGAAACAAGACTTCTGTGAAGCATTTGGTGGATCAGAAGATGCCGTGTGTTTCAATGGTGTATCGGTTTCATTTAGTCAAGTTGATGCTGCACCTCCTCCAGCTGGTCTGTGCCTTGAGAAAATTGGAAATGGGGCTTATATCAATCTAGTTCCACATCCAGATGGGTCCAACTGCGCATTTGTGTCTAACCAACAAGGACAGATATGGTTGGCAACTGTTCCTGATGAAGGATCAAGTGGGATTTTGGGAATCAATGAAGCTGAACCTTTTTTGGACATTACTGATCAATTGCTCTTTGGCACCGAGTTTGGTCTAATGAGTATGGCATTTCATCCAAACTTTGTGAACAACGGCCGCTTCTTTCTGTCATTCAACTGTGATAAGATGAAACATCCAGGCTGTTCAGGCAGATGTTCATGCAATACAGATGTTAATTGTGACCCTTCAAAGCTTTCTGCTGATAGTGGGGTGCAGCCCTGTCAATACCACAGTGTTGTTGCTGAATTTACAGTTAATGGTACAGCACCGGAGCCTTGGCAAAAAGCTCAAATCCATCAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GSDH

Protein Analysis

264

Amino Acids

28.51

Weight (kDa)

5.02

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15830
prunus_persica Prupe.5G184100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0180301
rosa_multiflora Rmu_co8475727.1_g000001 Rmu_sc0011963.1_g000016
rosa_samantha Rh7AG032400 Rh7CG034200 Rh7DG032900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 406
AccB1I GGYRCC 1 cut(s) 530
AciI CCGC 2 cut(s) 126, 586
AclWI GGATC 2 cut(s) 268, 469
AcoI YGGCCR 1 cut(s) 583
AcsI RAATTY 1 cut(s) 734
AfaI GTAC 1 cut(s) 751
AfiI CCNNNNNNNGG 2 cut(s) 332, 458
AgsI TTSAA 5 cut(s) 41, 93, 283, 604, 678
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 5 cut(s) 29, 332, 491, 682, 776
AluI AGCT 5 cut(s) 29, 332, 491, 682, 776
AlwI GGATC 2 cut(s) 268, 469
AoxI GGCC 1 cut(s) 583
ApeKI GCWGC 3 cut(s) 52, 317, 703
ApoI RAATTY 1 cut(s) 734
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 396
AvaII GGWCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 530
BbvI GCAGC 3 cut(s) 64, 304, 715
BccI CCATC 3 cut(s) 202, 386, 792
BceAI ACGGC 2 cut(s) 257, 598
BciT130I CCWGG 1 cut(s) 627
BclI TGATCA 2 cut(s) 217, 514
BfaI CTAG 2 cut(s) 57, 377
BisI GCNGC 4 cut(s) 53, 318, 586, 704
BlsI GCNGC 4 cut(s) 54, 319, 587, 705
Bme1390I CCNGG 1 cut(s) 627
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 4 cut(s) 66, 397, 532, 762
BmrFI CCNGG 1 cut(s) 627
BmsI GCATC 2 cut(s) 259, 304
BpmI CTGGAG 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 186, 365
BsaJI CCNNGG 1 cut(s) 764
BsaWI WCCGGW 1 cut(s) 757
Bsc4I CCNNNNNNNGG 2 cut(s) 332, 458
Bse1I ACTGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 1 cut(s) 764
BseGI GGATG 4 cut(s) 194, 385, 562, 622
BseLI CCNNNNNNNGG 2 cut(s) 332, 458
BseNI ACTGG 1 cut(s) 106
BseRI GAGGAG 1 cut(s) 315
BseX3I CGGCCG 1 cut(s) 583
BseXI GCAGC 3 cut(s) 64, 304, 715
BsgI GTGCAG 3 cut(s) 121, 303, 722
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 1 cut(s) 585
BshNI GGYRCC 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 586
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 2 cut(s) 332, 458
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 1 cut(s) 585
Bsp143I GATC 4 cut(s) 217, 260, 461, 514
BspACI CCGC 2 cut(s) 126, 586
BspANI GGCC 1 cut(s) 585
BspLI GGNNCC 4 cut(s) 66, 397, 532, 762
BspPI GGATC 2 cut(s) 268, 469
BspT107I GGYRCC 1 cut(s) 530
BsrI ACTGG 1 cut(s) 106
BssECI CCNNGG 1 cut(s) 764
BssMI GATC 4 cut(s) 217, 260, 461, 514
BssT1I CCWWGG 1 cut(s) 764
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 5 cut(s) 36, 448, 608, 722, 742
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 4 cut(s) 194, 385, 562, 622
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 4 cut(s) 220, 263, 464, 517
BstMBI GATC 4 cut(s) 217, 260, 461, 514
BstMCI CGRYCG 1 cut(s) 586
BstMWI GCNNNNNNNGC 1 cut(s) 636
BstNI CCWGG 1 cut(s) 627
BstSCI CCNGG 1 cut(s) 625
BstV1I GCAGC 3 cut(s) 64, 304, 715
BstZI CGGCCG 1 cut(s) 583
BsuRI GGCC 1 cut(s) 585
BtsCI GGATG 4 cut(s) 194, 385, 562, 622
BtsIMutI CAGTG 1 cut(s) 727
CfoI GCGC 1 cut(s) 407
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 1 cut(s) 750
CviAII CATG 1 cut(s) 648
CviQI GTAC 1 cut(s) 750
DpnI GATC 4 cut(s) 219, 262, 463, 516
DpnII GATC 4 cut(s) 217, 260, 461, 514
EaeI YGGCCR 1 cut(s) 583
EagI CGGCCG 1 cut(s) 583
EclXI CGGCCG 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 764
Eco47I GGWCC 1 cut(s) 396
Eco52I CGGCCG 1 cut(s) 583
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 764
ErhI CCWWGG 1 cut(s) 764
FaeI CATG 1 cut(s) 651
FaiI YATR 6 cut(s) 13, 167, 369, 436, 554, 649
FaqI GGGAC 1 cut(s) 143
FatI CATG 1 cut(s) 647
FauI CCCGC 1 cut(s) 119
FbaI TGATCA 2 cut(s) 217, 514
Fnu4HI GCNGC 4 cut(s) 53, 318, 586, 704
FokI GGATG 4 cut(s) 181, 372, 549, 609
Fsp4HI GCNGC 4 cut(s) 53, 318, 586, 704
FspBI CTAG 2 cut(s) 57, 377
FspI TGCGCA 1 cut(s) 406
GlaI GCGC 1 cut(s) 406
GluI GCNGC 4 cut(s) 53, 318, 586, 704
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 585
HapII CCGG 1 cut(s) 758
HhaI GCGC 1 cut(s) 407
Hin1II CATG 1 cut(s) 651
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 2 cut(s) 47, 480
HpaII CCGG 1 cut(s) 758
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 2 cut(s) 265, 789
Hpy188III TCNNGA 2 cut(s) 389, 452
Hpy8I GTNNAC 1 cut(s) 577
HpyAV CCTTC 2 cut(s) 452, 684
HpyCH4III ACNGT 5 cut(s) 36, 448, 608, 722, 742
HpyCH4V TGCA 6 cut(s) 8, 78, 138, 320, 651, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 636
Hsp92II CATG 1 cut(s) 651
HspAI GCGC 1 cut(s) 405
Ksp22I TGATCA 2 cut(s) 217, 514
Kzo9I GATC 4 cut(s) 217, 260, 461, 514
LmnI GCTCC 2 cut(s) 196, 760
Lsp1109I GCAGC 3 cut(s) 64, 304, 715
LweI GCATC 2 cut(s) 259, 304
MaeI CTAG 2 cut(s) 57, 377
MaeIII GTNAC 2 cut(s) 14, 668
MalI GATC 4 cut(s) 219, 262, 463, 516
MboI GATC 4 cut(s) 217, 260, 461, 514
MboII GAAGA 1 cut(s) 278
MfeI CAATTG 1 cut(s) 518
MluCI AATT 6 cut(s) 20, 42, 351, 518, 664, 734
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 2 cut(s) 97, 423
MnlI CCTC 3 cut(s) 208, 333, 336
MseI TTAA 2 cut(s) 663, 744
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 1 cut(s) 627
MunI CAATTG 1 cut(s) 518
MvaI CCWGG 1 cut(s) 627
MwoI GCNNNNNNNGC 1 cut(s) 636
NdeII GATC 4 cut(s) 217, 260, 461, 514
NlaIII CATG 1 cut(s) 651
NlaIV GGNNCC 4 cut(s) 66, 397, 532, 762
NmuCI GTSAC 2 cut(s) 14, 668
NsbI TGCGCA 1 cut(s) 406
PfeI GAWTC 1 cut(s) 480
PkrI GCNGC 4 cut(s) 54, 319, 587, 705
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 625
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 4 cut(s) 66, 397, 532, 762
PspPI GGNCC 1 cut(s) 396
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 1 cut(s) 751
RsaNI GTAC 1 cut(s) 750
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 2 cut(s) 663, 744
SatI GCNGC 4 cut(s) 53, 318, 586, 704
Sau3AI GATC 4 cut(s) 217, 260, 461, 514
Sau96I GGNCC 1 cut(s) 396
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 627
SetI ASST 8 cut(s) 31, 66, 325, 334, 493, 499, 684, 778
SfaNI GCATC 2 cut(s) 259, 304
SinI GGWCC 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 2 cut(s) 201, 344
SmoI CTYRAG 2 cut(s) 201, 344
Sse9I AATT 6 cut(s) 20, 42, 351, 518, 664, 734
SsiI CCGC 2 cut(s) 126, 586
SspMI CTAG 2 cut(s) 57, 377
StyD4I CCNGG 1 cut(s) 625
StyI CCWWGG 1 cut(s) 764
TaaI ACNGT 5 cut(s) 36, 448, 608, 722, 742
TaqI TCGA 2 cut(s) 110, 230
TasI AATT 6 cut(s) 20, 42, 351, 518, 664, 734
TauI GCSGC 1 cut(s) 588
TfiI GAWTC 1 cut(s) 480
Tru1I TTAA 2 cut(s) 663, 744
Tru9I TTAA 2 cut(s) 663, 744
TscAI CASTG 1 cut(s) 727
TseFI GTSAC 2 cut(s) 14, 668
TseI GCWGC 3 cut(s) 52, 317, 703
Tsp45I GTSAC 2 cut(s) 14, 668
TspDTI ATGAA 7 cut(s) 110, 288, 471, 501, 551, 632, 636
TspRI CASTG 1 cut(s) 727
VpaK11BI GGWCC 1 cut(s) 396
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 113
XspI CTAG 2 cut(s) 57, 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.