Rh7CG034200

HIPL1 protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019130
Physical Location & Seq
Reverse (-)
2340174 .. 2342512
2339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG034200.1

Sequence Viewer

Length: 1374 bp
ATGTTGTGTTTACTCCATAATAACTTGTTAGTTTTGTTACAAACGAAACAGGGCCACGGGCCACCTAAGAAGCAAGAAACTCCTCTGAAGTTTTGTTCTTACAATGGAAGCGTCTGCTGTAATTACACTCAGGATTTGCTGGTGCAGAAACAATTTGAAGCACTAAGTGTTGTCGATCCTGCATGTGCTTCTCTCCTGAAATCGACTATGTGTGCAATATGTGACCAATTTTCAGATCAACTGTTTGAAATTGACTCGCAGCCTAGAAAGGTTCCTGTTCTGTGCAACATCACAAGTTCAATGAAATCACACCAGTCGAAAGTTGGAGATTGCAGGGACTTCTGCACAAAGTTGTGGGATAAATGTGGCAACATATCCTTATTGAGTTCTCCATTTGCTCCATCCTCTCAAGGCAGAATGACTGATCATTGGCACTCGAAACAAGACTTCTGTAAAGCATTTGGTGGATCAGAAGATGCCGTGTGTTTCAATGGTGTATCGGCTTCATTTAGTCAAGTTGATGCTGCACCTCCTCCAGCTGGTCTGTGCCTTGAGAAAATTGGAAATGGGGCTTATATCAATCTAGTTCCGCATCCAGATGGTTCCAACTGCGCATTTGTGTCTAACCAACAAGGCCAGATATGGTTGGCAACTGTTCCTGATGAAGGATCAAGTGGGATTTTGGGAATCAATGAAGCTGAACCTTTTTTGGACATTATTGATCCAATGCTCTTTGGCACCGAGTTTGGTCTAATGAGTATGGCATTTCATCCAAACTTCGTGAACAACAGCCTCTTCTTTCTGTCATTCAACTGTGATAAGATGAAACATCCAGGCTGTTCAGGCAGATGTTCATGCAATACAGATGTGAATTGTGACCCTTCAAAGCTTTCTGCTGATAGTGGGGTGCAGCCCTGTCAATACCACAGTGTTGTTGCTGAATTTACAGTTAATGGCAAAAAGCTCAAATCCATCAGATCAGTGAGAAGGATATTCACAATGGGGCTTCCTTATAGGGGAGATCACGCCGGTCAGATTCTTTTTGGACCTGCAGATGGTTATCTATACCTCATGATGGGAGATGGTTCGCATCGGGATGACCCTTACAATTTTGCACAGAACAAGAAGTCCTTGCTTGGGAAAATTATGAGGCTAGACATAGATAACATACCAAGCACTGAAAACCCCGAAAACAGTGGGAACTTCTCGACTACCAAGATTTCATTCAGATGTGCTCACGACTCTCCAATGCAATGTAACATTGTGGCAGGAAGTTCTACTCCTTCCCTGGGGTATGTCTTCTCATTTGGCGAAGATAACAAGAAGGATGTTTATGTATTAACAAGCACTGTTTATGTATTAAAGAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GSDH

Protein Analysis

457

Amino Acids

50.0

Weight (kDa)

6.17

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSDH PF07995 198 - 401 6.1e-11 Glucose / Sorbosone dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019130)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g15830
prunus_persica Prupe.5G184100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0180301
rosa_multiflora Rmu_co8475727.1_g000001 Rmu_sc0011963.1_g000016
rosa_samantha Rh7AG032400 Rh7CG034200 Rh7DG032900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 613
Acc36I ACCTGC 1 cut(s) 1057
AccB1I GGYRCC 1 cut(s) 737
AciI CCGC 1 cut(s) 590
AclWI GGATC 4 cut(s) 170, 475, 676, 716
AcsI RAATTY 1 cut(s) 941
AcuI CTGAAG 1 cut(s) 107
AdeI CACNNNGTG 1 cut(s) 167
AfiI CCNNNNNNNGG 7 cut(s) 539, 665, 1016, 1055, 1075, 1137, 1289
AflIII ACRYGT 1 cut(s) 1368
AgsI TTSAA 6 cut(s) 158, 248, 300, 490, 811, 885
AjnI CCWGG 2 cut(s) 832, 1287
AjuI GAANNNNNNNTTGG 2 cut(s) 1208, 1240
AloI GAACNNNNNNTCC 2 cut(s) 1112, 1144
AluBI AGCT 4 cut(s) 539, 698, 889, 964
AluI AGCT 4 cut(s) 539, 698, 889, 964
Alw21I GWGCWC 1 cut(s) 1237
AlwI GGATC 4 cut(s) 170, 475, 676, 716
AoxI GGCC 3 cut(s) 52, 59, 634
ApeKI GCWGC 3 cut(s) 259, 524, 910
ApoI RAATTY 1 cut(s) 941
AspLEI GCGC 1 cut(s) 614
AspS9I GGNCC 3 cut(s) 52, 59, 1046
AvaII GGWCC 1 cut(s) 1046
BanI GGYRCC 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 1291
Bbv12I GWGCWC 1 cut(s) 1237
BbvI GCAGC 3 cut(s) 271, 511, 922
BccI CCATC 6 cut(s) 409, 593, 980, 1049, 1069, 1076
BceAI ACGGC 1 cut(s) 464
BciT130I CCWGG 2 cut(s) 834, 1289
BclI TGATCA 1 cut(s) 424
BfaI CTAG 3 cut(s) 264, 584, 1154
BfmI CTRYAG 1 cut(s) 1050
BfuAI ACCTGC 1 cut(s) 1057
BisI GCNGC 3 cut(s) 260, 525, 911
BlsI GCNGC 3 cut(s) 261, 526, 912
Bme1390I CCNGG 2 cut(s) 834, 1289
Bme18I GGWCC 1 cut(s) 1046
BmgT120I GGNCC 3 cut(s) 52, 59, 1046
BmiI GGNNCC 3 cut(s) 273, 604, 739
BmrFI CCNGG 2 cut(s) 834, 1289
BmsI GCATC 4 cut(s) 466, 511, 601, 1099
BpiI GAAGAC 1 cut(s) 1291
BpmI CTGGAG 1 cut(s) 519
BpuEI CTTGAG 2 cut(s) 393, 572
BsaBI GATNNNNATC 1 cut(s) 1059
BsaJI CCNNGG 3 cut(s) 55, 1287, 1288
Bsc4I CCNNNNNNNGG 7 cut(s) 539, 665, 1016, 1055, 1075, 1137, 1289
Bse118I RCCGGY 1 cut(s) 1028
Bse1I ACTGG 1 cut(s) 313
Bse3DI GCAATG 1 cut(s) 1259
Bse8I GATNNNNATC 1 cut(s) 1059
BseBI CCWGG 2 cut(s) 834, 1289
BseDI CCNNGG 3 cut(s) 55, 1287, 1288
BseGI GGATG 6 cut(s) 401, 592, 769, 829, 1102, 1333
BseJI GATNNNNATC 1 cut(s) 1059
BseLI CCNNNNNNNGG 7 cut(s) 539, 665, 1016, 1055, 1075, 1137, 1289
BseMI GCAATG 1 cut(s) 1259
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 313
BseRI GAGGAG 2 cut(s) 72, 522
BseXI GCAGC 3 cut(s) 271, 511, 922
BsgI GTGCAG 4 cut(s) 164, 328, 510, 929
BshFI GGCC 3 cut(s) 54, 61, 636
BshNI GGYRCC 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 1237
BsiSI CCGG 1 cut(s) 1029
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 7 cut(s) 539, 665, 1016, 1055, 1075, 1137, 1289
BsmFI GGGAC 1 cut(s) 350
BsnI GGCC 3 cut(s) 54, 61, 636
Bsp1286I GDGCHC 1 cut(s) 1237
Bsp143I GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
BspACI CCGC 1 cut(s) 590
BspANI GGCC 3 cut(s) 54, 61, 636
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 1071
BspLI GGNNCC 3 cut(s) 273, 604, 739
BspMAI CTGCAG 1 cut(s) 1054
BspMI ACCTGC 1 cut(s) 1057
BspPI GGATC 4 cut(s) 170, 475, 676, 716
BspT107I GGYRCC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 1259
BsrFI RCCGGY 1 cut(s) 1028
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 1028
BssECI CCNNGG 3 cut(s) 55, 1287, 1288
BssMI GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
Bst2UI CCWGG 2 cut(s) 834, 1289
Bst4CI ACNGT 7 cut(s) 243, 655, 815, 929, 949, 1196, 1351
Bst6I CTCTTC 1 cut(s) 800
BstDEI CTNAG 3 cut(s) 66, 129, 164
BstDSI CCRYGG 1 cut(s) 55
BstENI CCTNNNNNAGG 1 cut(s) 663
BstF5I GGATG 6 cut(s) 401, 592, 769, 829, 1102, 1333
BstHHI GCGC 1 cut(s) 614
BstKTI GATC 8 cut(s) 178, 238, 427, 470, 671, 724, 980, 1024
BstMBI GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 843
BstNI CCWGG 2 cut(s) 834, 1289
BstNSI RCATGY 2 cut(s) 186, 1372
BstSCI CCNGG 2 cut(s) 832, 1287
BstSFI CTRYAG 1 cut(s) 1050
BstV1I GCAGC 3 cut(s) 271, 511, 922
BstV2I GAAGAC 1 cut(s) 1291
BsuRI GGCC 3 cut(s) 54, 61, 636
BtgI CCRYGG 1 cut(s) 55
BtsCI GGATG 6 cut(s) 401, 592, 769, 829, 1102, 1333
BtsIMutI CAGTG 5 cut(s) 934, 987, 1176, 1201, 1347
BveI ACCTGC 1 cut(s) 1057
CciI TCATGA 1 cut(s) 1071
CfoI GCGC 1 cut(s) 614
Cfr10I RCCGGY 1 cut(s) 1028
Cfr13I GGNCC 3 cut(s) 52, 59, 1046
CseI GACGC 1 cut(s) 100
CviAII CATG 4 cut(s) 183, 855, 1072, 1369
DdeI CTNAG 3 cut(s) 66, 129, 164
DpnI GATC 8 cut(s) 177, 237, 426, 469, 670, 723, 979, 1023
DpnII GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
DraIII CACNNNGTG 1 cut(s) 167
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Eco47I GGWCC 1 cut(s) 1046
Eco57I CTGAAG 1 cut(s) 107
EcoNI CCTNNNNNAGG 1 cut(s) 663
EcoRII CCWGG 2 cut(s) 832, 1287
FaeI CATG 4 cut(s) 186, 858, 1075, 1372
FalI AAGNNNNNCTT 2 cut(s) 1115, 1147
FaqI GGGAC 1 cut(s) 350
FatI CATG 4 cut(s) 182, 854, 1071, 1368
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 260, 525, 911
FokI GGATG 6 cut(s) 388, 579, 756, 816, 1109, 1340
Fsp4HI GCNGC 3 cut(s) 260, 525, 911
FspBI CTAG 3 cut(s) 264, 584, 1154
FspI TGCGCA 1 cut(s) 613
GlaI GCGC 1 cut(s) 613
GluI GCNGC 3 cut(s) 260, 525, 911
GsuI CTGGAG 1 cut(s) 519
HaeIII GGCC 3 cut(s) 54, 61, 636
HapII CCGG 1 cut(s) 1029
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 614
Hin1II CATG 4 cut(s) 186, 858, 1075, 1372
Hin6I GCGC 1 cut(s) 612
HinP1I GCGC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 887
HinfI GANTC 4 cut(s) 254, 687, 1036, 1241
HpaII CCGG 1 cut(s) 1029
Hpy166II GTNNAC 2 cut(s) 11, 784
Hpy188I TCNGA 6 cut(s) 87, 235, 472, 977, 1035, 1229
Hpy188III TCNNGA 9 cut(s) 131, 196, 596, 659, 781, 1072, 1094, 1207, 1238
Hpy8I GTNNAC 2 cut(s) 11, 784
HpyAV CCTTC 5 cut(s) 659, 891, 981, 1293, 1318
HpyCH4III ACNGT 7 cut(s) 243, 655, 815, 929, 949, 1196, 1351
HpyF10VI GCNNNNNNNGC 1 cut(s) 843
HpyF3I CTNAG 3 cut(s) 66, 129, 164
Hsp92II CATG 4 cut(s) 186, 858, 1075, 1372
HspAI GCGC 1 cut(s) 612
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 3 cut(s) 271, 511, 922
LweI GCATC 4 cut(s) 466, 511, 601, 1099
MaeI CTAG 3 cut(s) 264, 584, 1154
MaeIII GTNAC 4 cut(s) 36, 221, 875, 1256
MalI GATC 8 cut(s) 177, 237, 426, 469, 670, 723, 979, 1023
MboI GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
MboII GAAGA 4 cut(s) 485, 787, 1291, 1325
MhlI GDGCHC 1 cut(s) 1237
MluCI AATT 9 cut(s) 121, 152, 227, 249, 558, 871, 941, 1108, 1143
MlyI GAGTC 2 cut(s) 248, 1235
MmeI TCCRAC 2 cut(s) 304, 630
MnlI CCTC 7 cut(s) 93, 415, 540, 543, 803, 1079, 1143
MseI TTAA 3 cut(s) 951, 1340, 1361
MslI CAYNNNNRTG 3 cut(s) 597, 1095, 1228
MspA1I CMGCKG 1 cut(s) 539
MspI CCGG 1 cut(s) 1029
MspR9I CCNGG 2 cut(s) 834, 1289
MvaI CCWGG 2 cut(s) 834, 1289
MwoI GCNNNNNNNGC 1 cut(s) 843
NdeII GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
NlaIII CATG 4 cut(s) 186, 858, 1075, 1372
NlaIV GGNNCC 3 cut(s) 273, 604, 739
NmuCI GTSAC 2 cut(s) 221, 875
NsbI TGCGCA 1 cut(s) 613
NspI RCATGY 2 cut(s) 186, 1372
PagI TCATGA 1 cut(s) 1071
PasI CCCWGGG 1 cut(s) 1288
PciI ACATGT 1 cut(s) 1368
PfeI GAWTC 2 cut(s) 687, 1036
PkrI GCNGC 3 cut(s) 261, 526, 912
PleI GAGTC 2 cut(s) 248, 1235
PpsI GAGTC 2 cut(s) 248, 1235
PscI ACATGT 1 cut(s) 1368
Psp6I CCWGG 2 cut(s) 832, 1287
PspGI CCWGG 2 cut(s) 832, 1287
PspN4I GGNNCC 3 cut(s) 273, 604, 739
PspPI GGNCC 3 cut(s) 52, 59, 1046
PstI CTGCAG 1 cut(s) 1054
PvuII CAGCTG 1 cut(s) 539
RseI CAYNNNNRTG 3 cut(s) 597, 1095, 1228
SaqAI TTAA 3 cut(s) 951, 1340, 1361
SatI GCNGC 3 cut(s) 260, 525, 911
Sau3AI GATC 8 cut(s) 175, 235, 424, 467, 668, 721, 977, 1021
Sau96I GGNCC 3 cut(s) 52, 59, 1046
SchI GAGTC 2 cut(s) 248, 1235
ScrFI CCNGG 2 cut(s) 834, 1289
SduI GDGCHC 1 cut(s) 1237
SfaNI GCATC 4 cut(s) 466, 511, 601, 1099
SfcI CTRYAG 1 cut(s) 1050
SinI GGWCC 1 cut(s) 1046
SmiMI CAYNNNNRTG 3 cut(s) 597, 1095, 1228
SmlI CTYRAG 2 cut(s) 408, 551
SmoI CTYRAG 2 cut(s) 408, 551
Sse9I AATT 9 cut(s) 121, 152, 227, 249, 558, 871, 941, 1108, 1143
SsiI CCGC 1 cut(s) 590
SspMI CTAG 3 cut(s) 264, 584, 1154
StyD4I CCNGG 2 cut(s) 832, 1287
TaaI ACNGT 7 cut(s) 243, 655, 815, 929, 949, 1196, 1351
TaqI TCGA 5 cut(s) 174, 203, 317, 437, 1208
TasI AATT 9 cut(s) 121, 152, 227, 249, 558, 871, 941, 1108, 1143
TfiI GAWTC 2 cut(s) 687, 1036
Tru1I TTAA 3 cut(s) 951, 1340, 1361
Tru9I TTAA 3 cut(s) 951, 1340, 1361
TscAI CASTG 5 cut(s) 934, 987, 1183, 1201, 1354
TseFI GTSAC 2 cut(s) 221, 875
TseI GCWGC 3 cut(s) 259, 524, 910
Tsp45I GTSAC 2 cut(s) 221, 875
TspDTI ATGAA 8 cut(s) 317, 495, 678, 708, 758, 839, 843, 1212
TspRI CASTG 5 cut(s) 934, 987, 1183, 1201, 1354
VpaK11BI GGWCC 1 cut(s) 1046
XagI CCTNNNNNAGG 1 cut(s) 663
XapI RAATTY 1 cut(s) 941
XceI RCATGY 2 cut(s) 186, 1372
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XspI CTAG 3 cut(s) 264, 584, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.