Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8475727.1

Orthogroup ID

OG0019130

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2049

Gene Structure 2049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8475727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 790 bp

atggctgcccccaaagcaaaagcaaaagcatcactcccaacatcactcccaactacagcagcagctgcccggccagtaactactgttgtgaaaccagattcagcgaactcatcgtcagcaccaaaggcaggaagcattgatgactcttacatggccttcctggaggacatgaaggcacttggtgcacttgaagcactaaatgttgtcgatcctgcatgtgcttctctcctgaaatcgactatgtgtgcaatatgtgaccaattttcagctcaactgtttgaaattgactcgcagcctagaaaggttcctgttctgtgcaacatcacaagttcaatgaaatcacaccagtcgaaagttggagattgcagggacttctgcacaaagttgtgggataaatgtggcaacatatccttattgagttctccatttgctccatcctctcaaggcagaatgactgatcattggcagtcgaaacaagacttctgtgaagcatttggtggatcagaagatgccgtgtgtttcaatggtgtatcggtttcatttagtcaagttgatgctccgcctcctccagctggtctgtgccttgagaaaattggaaatgggacttatatcaatctagttccacatccagatggttccaaccgcgcatttgtgtctaacaaacaaggccagatatggttggcaactgttcctgatgaaggatcaagtgggattttgggaatcaatgaagctgaaccttttttggacattactgatcaagtgctctttggcaccgagtttggtcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GSDH

Protein Analysis

263

Amino Acids

27.81

Weight (kDa)

4.86

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019130)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g15830
prunus_persica	Prupe.5G184100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0180301
rosa_multiflora	Rmu_co8475727.1_g000001 Rmu_sc0011963.1_g000016
rosa_samantha	Rh7AG032400 Rh7CG034200 Rh7DG032900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	770
AccII	CGCG	1 cut(s)	645
AciI	CCGC	2 cut(s)	560, 643
AclWI	GGATC	3 cut(s)	203, 508, 709
AcoI	YGGCCR	1 cut(s)	71
AdeI	CACNNNGTG	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	128, 572, 698
AgsI	TTSAA	4 cut(s)	191, 281, 333, 523
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	4 cut(s)	65, 269, 572, 731
AluI	AGCT	4 cut(s)	65, 269, 572, 731
Alw21I	GWGCWC	2 cut(s)	187, 765
Alw44I	GTGCAC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	203, 508, 709
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	71, 153, 667
ApaLI	GTGCAC	1 cut(s)	183
ApeKI	GCWGC	5 cut(s)	5, 59, 62, 65, 292
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspLEI	GCGC	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	187
BanI	GGYRCC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	187, 765
BbvI	GCAGC	4 cut(s)	52, 71, 74, 304
BccI	CCATC	2 cut(s)	442, 626
BceAI	ACGGC	1 cut(s)	497
BciT130I	CCWGG	1 cut(s)	161
BclI	TGATCA	2 cut(s)	457, 754
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	2 cut(s)	297, 617
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	5 cut(s)	6, 60, 63, 66, 293
BlsI	GCNGC	5 cut(s)	7, 61, 64, 67, 294
Bme1390I	CCNGG	2 cut(s)	70, 161
BmiI	GGNNCC	3 cut(s)	306, 637, 772
BmrFI	CCNGG	2 cut(s)	70, 161
BmsI	GCATC	3 cut(s)	38, 499, 544
BpmI	CTGGAG	2 cut(s)	182, 552
BpuEI	CTTGAG	2 cut(s)	426, 605
BpuMI	CCSGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 572, 698
Bse1I	ACTGG	2 cut(s)	74, 346
BseBI	CCWGG	1 cut(s)	161
BseGI	GGATG	2 cut(s)	434, 625
BseLI	CCNNNNNNNGG	3 cut(s)	128, 572, 698
BseNI	ACTGG	2 cut(s)	74, 346
BseRI	GAGGAG	1 cut(s)	555
BseSI	GKGCMC	1 cut(s)	187
BseXI	GCAGC	4 cut(s)	52, 71, 74, 304
BsgI	GTGCAG	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	3 cut(s)	73, 155, 669
BshNI	GGYRCC	1 cut(s)	770
BsiHKAI	GWGCWC	2 cut(s)	187, 765
BsiSI	CCGG	1 cut(s)	70
BslFI	GGGAC	2 cut(s)	383, 616
BslI	CCNNNNNNNGG	3 cut(s)	128, 572, 698
BsmFI	GGGAC	2 cut(s)	383, 616
BsnI	GGCC	3 cut(s)	73, 155, 669
Bsp1286I	GDGCHC	2 cut(s)	187, 765
Bsp143I	GATC	5 cut(s)	208, 457, 500, 701, 754
BspACI	CCGC	2 cut(s)	560, 643
BspANI	GGCC	3 cut(s)	73, 155, 669
BspFNI	CGCG	1 cut(s)	645
BspLI	GGNNCC	3 cut(s)	306, 637, 772
BspPI	GGATC	3 cut(s)	203, 508, 709
BspT107I	GGYRCC	1 cut(s)	770
BsrI	ACTGG	2 cut(s)	74, 346
BssMI	GATC	5 cut(s)	208, 457, 500, 701, 754
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	85, 276, 688
BstAPI	GCANNNNNTGC	2 cut(s)	65, 182
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	2 cut(s)	434, 625
BstFNI	CGCG	1 cut(s)	645
BstHHI	GCGC	1 cut(s)	647
BstKTI	GATC	5 cut(s)	211, 460, 503, 704, 757
BstMBI	GATC	5 cut(s)	208, 457, 500, 701, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 65, 125, 182, 191
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	2 cut(s)	68, 159
BstSFI	CTRYAG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	187
BstUI	CGCG	1 cut(s)	645
BstV1I	GCAGC	4 cut(s)	52, 71, 74, 304
BsuRI	GGCC	3 cut(s)	73, 155, 669
BtsCI	GGATG	2 cut(s)	434, 625
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	1 cut(s)	647
CviAII	CATG	3 cut(s)	151, 169, 216
CviJI	RGCY	9 cut(s)	5, 65, 73, 155, 269, 295, 572, 669, 731
CviKI_1	RGCY	9 cut(s)	5, 65, 73, 155, 269, 295, 572, 669, 731
DpnI	GATC	5 cut(s)	210, 459, 502, 703, 756
DpnII	GATC	5 cut(s)	208, 457, 500, 701, 754
DraIII	CACNNNGTG	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	549
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	159
FaeI	CATG	3 cut(s)	154, 172, 219
FaiI	YATR	8 cut(s)	152, 170, 217, 242, 253, 407, 609, 676
FaqI	GGGAC	2 cut(s)	383, 616
FatI	CATG	3 cut(s)	150, 168, 215
FbaI	TGATCA	2 cut(s)	457, 754
Fnu4HI	GCNGC	5 cut(s)	6, 60, 63, 66, 293
FokI	GGATG	2 cut(s)	421, 612
Fsp4HI	GCNGC	5 cut(s)	6, 60, 63, 66, 293
FspBI	CTAG	2 cut(s)	297, 617
GlaI	GCGC	1 cut(s)	646
GluI	GCNGC	5 cut(s)	6, 60, 63, 66, 293
GsuI	CTGGAG	2 cut(s)	182, 552
HaeIII	GGCC	3 cut(s)	73, 155, 669
HapII	CCGG	1 cut(s)	70
HhaI	GCGC	1 cut(s)	647
Hin1II	CATG	3 cut(s)	154, 172, 219
Hin6I	GCGC	1 cut(s)	645
HinP1I	GCGC	1 cut(s)	645
HinfI	GANTC	4 cut(s)	98, 143, 287, 720
HpaII	CCGG	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	3 cut(s)	229, 629, 692
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	3 cut(s)	166, 166, 692
HpyCH4III	ACNGT	3 cut(s)	85, 276, 688
HpyCH4V	TGCA	6 cut(s)	185, 215, 248, 318, 366, 378
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 65, 125, 182, 191
Hsp92II	CATG	3 cut(s)	154, 172, 219
HspAI	GCGC	1 cut(s)	645
Ksp22I	TGATCA	2 cut(s)	457, 754
Kzo9I	GATC	5 cut(s)	208, 457, 500, 701, 754
LmnI	GCTCC	2 cut(s)	436, 562
Lsp1109I	GCAGC	4 cut(s)	52, 71, 74, 304
LweI	GCATC	3 cut(s)	38, 499, 544
MaeI	CTAG	2 cut(s)	297, 617
MaeIII	GTNAC	2 cut(s)	76, 254
MalI	GATC	5 cut(s)	210, 459, 502, 703, 756
MboI	GATC	5 cut(s)	208, 457, 500, 701, 754
MboII	GAAGA	1 cut(s)	518
MhlI	GDGCHC	2 cut(s)	187, 765
MluCI	AATT	3 cut(s)	260, 282, 591
MlyI	GAGTC	2 cut(s)	137, 281
MmeI	TCCRAC	2 cut(s)	337, 663
MnlI	CCTC	4 cut(s)	157, 448, 573, 576
MslI	CAYNNNNRTG	1 cut(s)	630
MspA1I	CMGCKG	2 cut(s)	65, 572
MspI	CCGG	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	70, 161
MvaI	CCWGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	5 cut(s)	14, 65, 125, 182, 191
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	5 cut(s)	208, 457, 500, 701, 754
NlaIII	CATG	3 cut(s)	154, 172, 219
NlaIV	GGNNCC	3 cut(s)	306, 637, 772
NmuCI	GTSAC	1 cut(s)	254
NspI	RCATGY	1 cut(s)	219
PfeI	GAWTC	2 cut(s)	98, 720
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	5 cut(s)	7, 61, 64, 67, 294
PleI	GAGTC	2 cut(s)	137, 281
PpsI	GAGTC	2 cut(s)	137, 281
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	306, 637, 772
PstNI	CAGNNNCTG	1 cut(s)	65
PvuII	CAGCTG	2 cut(s)	65, 572
RseI	CAYNNNNRTG	1 cut(s)	630
SatI	GCNGC	5 cut(s)	6, 60, 63, 66, 293
Sau3AI	GATC	5 cut(s)	208, 457, 500, 701, 754
SchI	GAGTC	2 cut(s)	137, 281
ScrFI	CCNGG	2 cut(s)	70, 161
SduI	GDGCHC	2 cut(s)	187, 765
SetI	ASST	6 cut(s)	67, 271, 306, 574, 733, 739
SfaNI	GCATC	3 cut(s)	38, 499, 544
SfcI	CTRYAG	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	441, 584
SmoI	CTYRAG	2 cut(s)	441, 584
Sse9I	AATT	3 cut(s)	260, 282, 591
SsiI	CCGC	2 cut(s)	560, 643
SspMI	CTAG	2 cut(s)	297, 617
StyD4I	CCNGG	2 cut(s)	68, 159
TaaI	ACNGT	3 cut(s)	85, 276, 688
TaqI	TCGA	4 cut(s)	207, 236, 350, 470
TasI	AATT	3 cut(s)	260, 282, 591
TfiI	GAWTC	2 cut(s)	98, 720
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	5 cut(s)	5, 59, 62, 65, 292
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	5 cut(s)	185, 350, 528, 711, 741
VneI	GTGCAC	1 cut(s)	183
XagI	CCTNNNNNAGG	1 cut(s)	696
XceI	RCATGY	1 cut(s)	219
XcmI	CCANNNNNNNNNTGG	1 cut(s)	353
XspI	CTAG	2 cut(s)	297, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.