FvH4_5g17890

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0021078
Physical Location & Seq
Forward (+)
10267220 .. 10268076
857 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17890.t1

Sequence Viewer

Length: 588 bp
ATGAAACCAGGAATTACGGGAACACCAAAGTCGAAAGAGGTCTTGCTTCCCTTTGACATAATAGGGACATGGAAGGCCATGGAGGAGTGCTCCAGGCTGGGATTGACCAAGTCTATTGGCGTCAGCAACTTTGGGACCAAAAAGCTCTCTCAAATCCTTGACAACGCAACCATCCCCCCGGCGATCAATCAGGTAGAAATGAACCCATCTTGGCAGCAAGAGAAGCTGCAAGACTTCTGTAAAGTGAAAGGAATTCATGTGACTGCATGGTCTCCCTTGGGGTTTTATGGAGCTACCAGCTGGGCTCCAAAACCCTGGATAGACTATGCCATCATTAAGGAGATCGCTGCTGCTAAAGGGAAGAGTGTGGCACAGGTTATACTGAGATCTATCATCCAACAAGGAGAGGTGAGTGCAATCTCGAGGAGTTTCAACAAGGAAAGGATGAAGTATAATATTCAAATATTTGATTGGGAGCTAACTGAGGATGAAATGAATAAGATCAAGGAGATTCCCCAGCGCAGGTGTTTTGCAGGTCATATGTATGTTTCTGAAAAAGGTCAATACAAATCCGTCGACGATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

196

Amino Acids

22.01

Weight (kDa)

9.03

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 19 - 171 1.4e-25 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17890
pyrus_communis pycom14g20320
rosa_chinensis RchiOBHm_Chr4g0445451
rosa_multiflora Rmu_sc0040608.1_g000001
rosa_rugosa Rorug04G0361400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 513
AasI GACNNNNNNGTC 1 cut(s) 268
Acc36I ACCTGC 2 cut(s) 513, 524
AccI GTMKAC 1 cut(s) 576
AcsI RAATTY 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 522
AgsI TTSAA 2 cut(s) 433, 461
AjnI CCWGG 3 cut(s) 7, 92, 314
AluBI AGCT 5 cut(s) 145, 226, 293, 300, 478
AluI AGCT 5 cut(s) 145, 226, 293, 300, 478
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 1 cut(s) 75
ApeKI GCWGC 4 cut(s) 214, 226, 347, 350
ApoI RAATTY 1 cut(s) 252
AspLEI GCGC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 135
BanII GRGCYC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 4 cut(s) 213, 226, 334, 337
BccI CCATC 3 cut(s) 179, 214, 338
BciT130I CCWGG 3 cut(s) 9, 94, 316
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 1 cut(s) 276
BfuAI ACCTGC 2 cut(s) 513, 524
BglII AGATCT 1 cut(s) 386
BisI GCNGC 4 cut(s) 215, 227, 348, 351
BlsI GCNGC 4 cut(s) 216, 228, 349, 352
Bme1390I CCNGG 4 cut(s) 9, 94, 179, 316
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 421
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 2 cut(s) 136, 306
BmrFI CCNGG 4 cut(s) 9, 94, 179, 316
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 1 cut(s) 76
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 276
BsaJI CCNNGG 4 cut(s) 78, 177, 276, 314
Bsc4I CCNNNNNNNGG 1 cut(s) 522
BseBI CCWGG 3 cut(s) 9, 94, 316
BseDI CCNNGG 4 cut(s) 78, 177, 276, 314
BseGI GGATG 4 cut(s) 171, 393, 450, 493
BseLI CCNNNNNNNGG 1 cut(s) 522
BseMII CTCAG 2 cut(s) 374, 474
BseRI GAGGAG 2 cut(s) 98, 439
BseXI GCAGC 4 cut(s) 213, 226, 334, 337
BseYI CCCAGC 3 cut(s) 97, 300, 516
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 92
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 79, 148
BslI CCNNNNNNNGG 1 cut(s) 522
BsmAI GTCTC 1 cut(s) 276
BsmFI GGGAC 2 cut(s) 79, 148
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 276
BsoBI CYCGRG 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 92, 307
Bsp143I GATC 5 cut(s) 183, 342, 386, 501, 580
Bsp19I CCATGG 1 cut(s) 78
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 375, 475
BspLI GGNNCC 2 cut(s) 136, 306
BspMI ACCTGC 2 cut(s) 513, 524
BspTNI GGTCTC 1 cut(s) 276
BssECI CCNNGG 4 cut(s) 78, 177, 276, 314
BssMI GATC 5 cut(s) 183, 342, 386, 501, 580
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 2 cut(s) 78, 276
Bst2UI CCWGG 3 cut(s) 9, 94, 316
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 383, 483
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 4 cut(s) 171, 393, 450, 493
BstHHI GCGC 1 cut(s) 522
BstKTI GATC 5 cut(s) 186, 345, 389, 504, 583
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 5 cut(s) 183, 342, 386, 501, 580
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNI CCWGG 3 cut(s) 9, 94, 316
BstSCI CCNGG 4 cut(s) 7, 92, 177, 314
BstV1I GCAGC 4 cut(s) 213, 226, 334, 337
BstX2I RGATCY 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 315
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 1 cut(s) 77
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 4 cut(s) 171, 393, 450, 493
BveI ACCTGC 2 cut(s) 513, 524
CfoI GCGC 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 135
CseI GACGC 1 cut(s) 109
CviAII CATG 4 cut(s) 69, 79, 257, 267
CviJI RGCY 8 cut(s) 77, 97, 145, 226, 293, 300, 305, 478
CviKI_1 RGCY 8 cut(s) 77, 97, 145, 226, 293, 300, 305, 478
DdeI CTNAG 2 cut(s) 383, 483
DpnI GATC 5 cut(s) 185, 344, 388, 503, 582
DpnII GATC 5 cut(s) 183, 342, 386, 501, 580
DrdI GACNNNNNNGTC 1 cut(s) 268
DseDI GACNNNNNNGTC 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 2 cut(s) 78, 276
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 421
EcoRI GAATTC 1 cut(s) 252
EcoRII CCWGG 3 cut(s) 7, 92, 314
EcoT14I CCWWGG 2 cut(s) 78, 276
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 78, 276
FaeI CATG 4 cut(s) 72, 82, 260, 270
FaqI GGGAC 2 cut(s) 79, 148
FatI CATG 4 cut(s) 68, 78, 256, 266
FauNDI CATATG 1 cut(s) 540
FblI GTMKAC 1 cut(s) 576
Fnu4HI GCNGC 4 cut(s) 215, 227, 348, 351
FokI GGATG 4 cut(s) 158, 380, 457, 500
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 4 cut(s) 215, 227, 348, 351
GlaI GCGC 1 cut(s) 521
GluI GCNGC 4 cut(s) 215, 227, 348, 351
GsaI CCCAGC 3 cut(s) 101, 304, 520
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 109
HhaI GCGC 1 cut(s) 522
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 72, 82, 260, 270
Hin6I GCGC 1 cut(s) 520
HinP1I GCGC 1 cut(s) 520
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HinfI GANTC 1 cut(s) 511
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 421
Hpy166II GTNNAC 1 cut(s) 577
Hpy188I TCNGA 1 cut(s) 553
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 1 cut(s) 577
Hpy99I CGWCG 2 cut(s) 578, 581
HpyAV CCTTC 1 cut(s) 67
HpyCH4V TGCA 4 cut(s) 229, 266, 416, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 2 cut(s) 383, 483
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 72, 82, 260, 270
HspAI GCGC 1 cut(s) 520
Kzo9I GATC 5 cut(s) 183, 342, 386, 501, 580
LmnI GCTCC 4 cut(s) 95, 290, 310, 475
Lsp1109I GCAGC 4 cut(s) 213, 226, 334, 337
MaeIII GTNAC 1 cut(s) 259
MalI GATC 5 cut(s) 185, 344, 388, 503, 582
MboI GATC 5 cut(s) 183, 342, 386, 501, 580
MboII GAAGA 1 cut(s) 373
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 2 cut(s) 92, 307
MluCI AATT 2 cut(s) 12, 252
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 5 cut(s) 31, 76, 400, 417, 478
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 4 cut(s) 9, 94, 179, 316
MvaI CCWGG 3 cut(s) 9, 94, 316
MwoI GCNNNNNNNGC 1 cut(s) 223
NciI CCSGG 1 cut(s) 179
NcoI CCATGG 1 cut(s) 78
NdeI CATATG 1 cut(s) 540
NdeII GATC 5 cut(s) 183, 342, 386, 501, 580
NlaIII CATG 4 cut(s) 72, 82, 260, 270
NlaIV GGNNCC 2 cut(s) 136, 306
NmuCI GTSAC 1 cut(s) 259
PaeR7I CTCGAG 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 513
PfeI GAWTC 1 cut(s) 511
PflFI GACNNNGTC 1 cut(s) 109
PkrI GCNGC 4 cut(s) 216, 228, 349, 352
Psp6I CCWGG 3 cut(s) 7, 92, 314
PspFI CCCAGC 3 cut(s) 97, 300, 516
PspGI CCWGG 3 cut(s) 7, 92, 314
PspN4I GGNNCC 2 cut(s) 136, 306
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 1 cut(s) 386
PsyI GACNNNGTC 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 300
RseI CAYNNNNRTG 1 cut(s) 543
SalI GTCGAC 1 cut(s) 575
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 215, 227, 348, 351
Sau3AI GATC 5 cut(s) 183, 342, 386, 501, 580
Sau96I GGNCC 1 cut(s) 135
ScrFI CCNGG 4 cut(s) 9, 94, 179, 316
SduI GDGCHC 2 cut(s) 92, 307
Sfr274I CTCGAG 1 cut(s) 421
SgrDI CGTCGACG 1 cut(s) 575
SinI GGWCC 1 cut(s) 135
SlaI CTCGAG 1 cut(s) 421
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 1 cut(s) 421
SmoI CTYRAG 1 cut(s) 421
Sse9I AATT 2 cut(s) 12, 252
SspI AATATT 2 cut(s) 457, 465
StyD4I CCNGG 4 cut(s) 7, 92, 177, 314
StyI CCWWGG 2 cut(s) 78, 276
TaqI TCGA 3 cut(s) 32, 422, 576
TasI AATT 2 cut(s) 12, 252
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 4 cut(s) 214, 226, 347, 350
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 6 cut(s) 17, 215, 245, 461, 504, 509
TspGWI ACGGA 1 cut(s) 562
Tth111I GACNNNGTC 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 252
XhoI CTCGAG 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.