pycom14g20320

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0021078
Physical Location & Seq
Forward (+)
21378953 .. 21379382
430 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g20320.2

Sequence Viewer

Length: 378 bp
ATGTCAAATACAGAATATATCAGTATTTTTCTTTCACAGCTGGGCTGGAGTACGTGGATTCGTTGGCCGTTAAGGCTGAAACATGGAATCCCAGGATTTGAACTAACTAAAGAAGATATGATACCCTTTGATATAACGAGGATATGGGCGGCCATGGAAGAAATTTCCAGGTTAGGCTTAGCCAAGTCTATTGGCGTTAGCAATTTCGGCACCTTAAAGCTCTCTCAAATCCTTCACAATGCCACCATCCCCCCGGCGGTTAACCAGGTCGAAATGAACCCGTCTTGGCAGCAAGGAAAACTGCGAGACTTCTGTAAAGAGAGGAATTCATGTGACTGCGTGGTCTCCCTTGGGACTTTATGGATCTCCTCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

126

Amino Acids

14.17

Weight (kDa)

7.74

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17890
pyrus_communis pycom14g20320
rosa_chinensis RchiOBHm_Chr4g0445451
rosa_multiflora Rmu_sc0040608.1_g000001
rosa_rugosa Rorug04G0361400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccB1I GGYRCC 1 cut(s) 209
AciI CCGC 2 cut(s) 149, 257
AclWI GGATC 1 cut(s) 371
AcoI YGGCCR 2 cut(s) 65, 150
AcsI RAATTY 2 cut(s) 162, 325
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 3 cut(s) 91, 167, 264
AluBI AGCT 3 cut(s) 40, 220, 374
AluI AGCT 3 cut(s) 40, 220, 374
Alw26I GTCTC 2 cut(s) 300, 349
AlwI GGATC 1 cut(s) 371
AoxI GGCC 2 cut(s) 65, 150
ApeKI GCWGC 1 cut(s) 289
ApoI RAATTY 2 cut(s) 162, 325
AsuC2I CCSGG 1 cut(s) 254
BanI GGYRCC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 105, 137
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 3 cut(s) 93, 169, 266
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 300, 349
BglI GCCNNNNNGGC 1 cut(s) 73
BisI GCNGC 2 cut(s) 150, 290
BlpI GCTNAGC 1 cut(s) 178
BlsI GCNGC 2 cut(s) 151, 291
Bme1390I CCNGG 4 cut(s) 93, 169, 254, 266
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 4 cut(s) 93, 169, 254, 266
BpmI CTGGAG 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 370
Bpu1102I GCTNAGC 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 254
BsaAI YACGTR 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 91, 153, 252, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 256
BseBI CCWGG 3 cut(s) 93, 169, 266
BseDI CCNNGG 4 cut(s) 91, 153, 252, 349
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 256
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 67, 152
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 254
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 2 cut(s) 300, 349
BsmFI GGGAC 1 cut(s) 367
BsnI GGCC 2 cut(s) 67, 152
Bso31I GGTCTC 1 cut(s) 349
Bsp143I GATC 1 cut(s) 363
Bsp1720I GCTNAGC 1 cut(s) 178
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 2 cut(s) 149, 257
BspANI GGCC 2 cut(s) 67, 152
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 209
BspTNI GGTCTC 1 cut(s) 349
BssECI CCNNGG 4 cut(s) 91, 153, 252, 349
BssMI GATC 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 153, 349
Bst2UI CCWGG 3 cut(s) 93, 169, 266
BstBAI YACGTR 1 cut(s) 54
BstDEI CTNAG 2 cut(s) 178, 370
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 1 cut(s) 246
BstKTI GATC 1 cut(s) 366
BstMAI GTCTC 2 cut(s) 300, 349
BstMBI GATC 1 cut(s) 363
BstMWI GCNNNNNNNGC 2 cut(s) 73, 207
BstNI CCWGG 3 cut(s) 93, 169, 266
BstSCI CCNGG 4 cut(s) 91, 167, 252, 264
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 363
BstYI RGATCY 1 cut(s) 363
BsuRI GGCC 2 cut(s) 67, 152
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 264
Csp6I GTAC 1 cut(s) 51
CviAII CATG 3 cut(s) 83, 154, 330
CviJI RGCY 9 cut(s) 40, 45, 67, 76, 152, 177, 182, 220, 374
CviKI_1 RGCY 9 cut(s) 40, 45, 67, 76, 152, 177, 182, 220, 374
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 178, 370
DpnI GATC 1 cut(s) 365
DpnII GATC 1 cut(s) 363
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 2 cut(s) 65, 150
Eco130I CCWWGG 2 cut(s) 153, 349
Eco31I GGTCTC 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 91, 167, 264
EcoT14I CCWWGG 2 cut(s) 153, 349
ErhI CCWWGG 2 cut(s) 153, 349
FaeI CATG 3 cut(s) 86, 157, 333
FaiI YATR 8 cut(s) 18, 84, 119, 134, 145, 155, 331, 361
FaqI GGGAC 1 cut(s) 367
FatI CATG 3 cut(s) 82, 153, 329
Fnu4HI GCNGC 2 cut(s) 150, 290
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 150, 290
GluI GCNGC 2 cut(s) 150, 290
GsaI CCCAGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 2 cut(s) 67, 152
HapII CCGG 1 cut(s) 254
Hin1II CATG 3 cut(s) 86, 157, 333
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 58, 87
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 262
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 1 cut(s) 242
HpyCH4IV ACGT 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 207
HpyF3I CTNAG 2 cut(s) 178, 370
HpySE526I ACGT 1 cut(s) 53
Hsp92II CATG 3 cut(s) 86, 157, 333
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 363
LpnPI CCDG 9 cut(s) 26, 31, 78, 105, 154, 181, 251, 267, 278
Lsp1109I GCAGC 1 cut(s) 301
MabI ACCWGGT 1 cut(s) 264
MaeII ACGT 1 cut(s) 53
MaeIII GTNAC 1 cut(s) 332
MalI GATC 1 cut(s) 365
MboI GATC 1 cut(s) 363
MboII GAAGA 2 cut(s) 125, 170
MflI RGATCY 1 cut(s) 363
MluCI AATT 3 cut(s) 162, 202, 325
MnlI CCTC 2 cut(s) 132, 315
MseI TTAA 4 cut(s) 71, 215, 261, 376
MspA1I CMGCKG 1 cut(s) 40
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 4 cut(s) 93, 169, 254, 266
MvaI CCWGG 3 cut(s) 93, 169, 266
MwoI GCNNNNNNNGC 2 cut(s) 73, 207
NciI CCSGG 1 cut(s) 254
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 363
NlaIII CATG 3 cut(s) 86, 157, 333
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 332
PfeI GAWTC 2 cut(s) 58, 87
PkrI GCNGC 2 cut(s) 151, 291
Ppu21I YACGTR 1 cut(s) 54
Psp6I CCWGG 3 cut(s) 91, 167, 264
PspFI CCCAGC 1 cut(s) 40
PspGI CCWGG 3 cut(s) 91, 167, 264
PspN4I GGNNCC 1 cut(s) 211
PsuI RGATCY 1 cut(s) 363
PvuII CAGCTG 1 cut(s) 40
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 4 cut(s) 71, 215, 261, 376
SatI GCNGC 2 cut(s) 150, 290
Sau3AI GATC 1 cut(s) 363
ScrFI CCNGG 4 cut(s) 93, 169, 254, 266
SetI ASST 7 cut(s) 42, 56, 173, 215, 222, 270, 376
SexAI ACCWGGT 1 cut(s) 264
Sse9I AATT 3 cut(s) 162, 202, 325
SsiI CCGC 2 cut(s) 149, 257
StyD4I CCNGG 4 cut(s) 91, 167, 252, 264
StyI CCWWGG 2 cut(s) 153, 349
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 270
TasI AATT 3 cut(s) 162, 202, 325
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 2 cut(s) 58, 87
Tru1I TTAA 4 cut(s) 71, 215, 261, 376
Tru9I TTAA 4 cut(s) 71, 215, 261, 376
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 2 cut(s) 290, 318
XapI RAATTY 2 cut(s) 162, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.