Rmu_sc0040608.1_g000001

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040608.1
OG0021078
Physical Location & Seq
Forward (+)
142 .. 1083
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040608.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atggggacatgggagacgatggaagagtgctacaggctgggattggccaagtctattggcgtcagcaacttcggtaccaaaaagctctctcaaatccttgacaacgggaccatccctccagcggtcaatcaggtggaaatgaacccgtcctggcagcaaggaaatctgcgagacttctgtaaagggaaaggaattcatgtgactgcatggtctcccttggggttttatggagctaccagctgggctccaaaaccctggatagactatgccatcattaaggacatcgctgctgcaaaggggaagagtgtagcacaggttatactgagatccatcatccaacaaggagaggtgagtgcaatttcgaggagtttcaacaaggagaggatgatggataatgctcaaatatttgattgggagctaagtgaggatgaaatgaacaagatcaaggaaattcctcagcgcaggttggctgtaggagacttcttcgtttccgaagaaggtcaatacaaatccctcgacgacctttgggatggcaacccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

180

Amino Acids

20.23

Weight (kDa)

5.28

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17890
pyrus_communis pycom14g20320
rosa_chinensis RchiOBHm_Chr4g0445451
rosa_multiflora Rmu_sc0040608.1_g000001
rosa_rugosa Rorug04G0361400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 453
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 1 cut(s) 122
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 1 cut(s) 45
AcsI RAATTY 2 cut(s) 192, 450
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 1 cut(s) 373
AjnI CCWGG 2 cut(s) 149, 254
AluBI AGCT 4 cut(s) 85, 233, 240, 418
AluI AGCT 4 cut(s) 85, 233, 240, 418
Alw26I GTCTC 4 cut(s) 8, 165, 216, 471
AlwI GGATC 1 cut(s) 321
AoxI GGCC 1 cut(s) 45
ApeKI GCWGC 3 cut(s) 154, 287, 290
ApoI RAATTY 2 cut(s) 192, 450
Asp718I GGTACC 1 cut(s) 74
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 361
AvaII GGWCC 1 cut(s) 108
BaeI ACNNNNGTAYC 2 cut(s) 58, 91
BalI TGGCCA 1 cut(s) 47
BanI GGYRCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 247
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 166, 274, 277
BccI CCATC 6 cut(s) 13, 119, 278, 338, 382, 524
BciT130I CCWGG 2 cut(s) 151, 256
BcoDI GTCTC 4 cut(s) 8, 165, 216, 471
BfmI CTRYAG 2 cut(s) 31, 471
BfuAI ACCTGC 1 cut(s) 453
BisI GCNGC 3 cut(s) 155, 288, 291
BlsI GCNGC 3 cut(s) 156, 289, 292
Bme1390I CCNGG 2 cut(s) 151, 256
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 3 cut(s) 76, 109, 246
BmrFI CCNGG 2 cut(s) 151, 256
BpmI CTGGAG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 216, 254
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseBI CCWGG 2 cut(s) 151, 256
BseDI CCNNGG 2 cut(s) 216, 254
BseGI GGATG 5 cut(s) 111, 333, 390, 433, 535
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 314, 470
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 3 cut(s) 166, 274, 277
BseYI CCCAGC 2 cut(s) 37, 240
BshFI GGCC 1 cut(s) 47
BshNI GGYRCC 1 cut(s) 74
BslFI GGGAC 2 cut(s) 19, 121
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 4 cut(s) 8, 165, 216, 471
BsmBI CGTCTC 1 cut(s) 8
BsmFI GGGAC 2 cut(s) 19, 121
BsnI GGCC 1 cut(s) 47
Bso31I GGTCTC 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 2 cut(s) 326, 441
BspACI CCGC 1 cut(s) 122
BspANI GGCC 1 cut(s) 47
BspCNI CTCAG 2 cut(s) 315, 469
BspLI GGNNCC 3 cut(s) 76, 109, 246
BspMI ACCTGC 1 cut(s) 453
BspPI GGATC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 216
BssECI CCNNGG 2 cut(s) 216, 254
BssMI GATC 2 cut(s) 326, 441
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 151, 256
Bst6I CTCTTC 2 cut(s) 18, 296
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 323, 419, 456
BstF5I GGATG 5 cut(s) 111, 333, 390, 433, 535
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 2 cut(s) 329, 444
BstMAI GTCTC 4 cut(s) 8, 165, 216, 471
BstMBI GATC 2 cut(s) 326, 441
BstNI CCWGG 2 cut(s) 151, 256
BstSCI CCNGG 2 cut(s) 149, 254
BstSFI CTRYAG 2 cut(s) 31, 471
BstV1I GCAGC 3 cut(s) 166, 274, 277
BstX2I RGATCY 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 1 cut(s) 326
BsuRI GGCC 1 cut(s) 47
BtgZI GCGATG 1 cut(s) 268
BtsCI GGATG 5 cut(s) 111, 333, 390, 433, 535
BveI ACCTGC 1 cut(s) 453
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 108
CseI GACGC 1 cut(s) 49
Csp6I GTAC 1 cut(s) 75
CviAII CATG 3 cut(s) 9, 197, 207
CviJI RGCY 8 cut(s) 37, 47, 85, 233, 240, 245, 418, 470
CviKI_1 RGCY 8 cut(s) 37, 47, 85, 233, 240, 245, 418, 470
CviQI GTAC 1 cut(s) 75
DdeI CTNAG 3 cut(s) 323, 419, 456
DpnI GATC 2 cut(s) 328, 443
DpnII GATC 2 cut(s) 326, 441
DrdI GACNNNNNNGTC 1 cut(s) 208
DseDI GACNNNNNNGTC 1 cut(s) 208
EaeI YGGCCR 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 18, 296
EarI CTCTTC 2 cut(s) 18, 296
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 108
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 149, 254
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 3 cut(s) 12, 200, 210
FaiI YATR 6 cut(s) 10, 198, 208, 228, 267, 320
FaqI GGGAC 2 cut(s) 19, 121
FatI CATG 3 cut(s) 8, 196, 206
Fnu4HI GCNGC 3 cut(s) 155, 288, 291
FokI GGATG 4 cut(s) 98, 320, 397, 440
FriOI GRGCYC 1 cut(s) 247
Fsp4HI GCNGC 3 cut(s) 155, 288, 291
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 155, 288, 291
GsaI CCCAGC 2 cut(s) 41, 244
GsuI CTGGAG 1 cut(s) 102
HaeIII GGCC 1 cut(s) 47
HgaI GACGC 1 cut(s) 49
HhaI GCGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 3 cut(s) 12, 200, 210
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 493
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 1 cut(s) 491
HpyCH4V TGCA 3 cut(s) 206, 293, 356
HpyF3I CTNAG 3 cut(s) 323, 419, 456
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 3 cut(s) 12, 200, 210
HspAI GCGC 1 cut(s) 460
KpnI GGTACC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 326, 441
LmnI GCTCC 3 cut(s) 230, 250, 415
Lsp1109I GCAGC 3 cut(s) 166, 274, 277
MaeIII GTNAC 1 cut(s) 199
MalI GATC 2 cut(s) 328, 443
MboI GATC 2 cut(s) 326, 441
MboII GAAGA 4 cut(s) 35, 313, 475, 506
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 3 cut(s) 192, 357, 450
MluNI TGGCCA 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 361
MnlI CCTC 7 cut(s) 126, 340, 357, 375, 418, 465, 524
Mox20I TGGCCA 1 cut(s) 47
MscI TGGCCA 1 cut(s) 47
MseI TTAA 1 cut(s) 276
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 2 cut(s) 122, 240
MspR9I CCNGG 2 cut(s) 151, 256
MvaI CCWGG 2 cut(s) 151, 256
NdeII GATC 2 cut(s) 326, 441
NlaIII CATG 3 cut(s) 12, 200, 210
NlaIV GGNNCC 3 cut(s) 76, 109, 246
NmuCI GTSAC 1 cut(s) 199
PkrI GCNGC 3 cut(s) 156, 289, 292
Psp6I CCWGG 2 cut(s) 149, 254
PspFI CCCAGC 2 cut(s) 37, 240
PspGI CCWGG 2 cut(s) 149, 254
PspN4I GGNNCC 3 cut(s) 76, 109, 246
PspPI GGNCC 1 cut(s) 108
PsuI RGATCY 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 1 cut(s) 76
RsaNI GTAC 1 cut(s) 75
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 3 cut(s) 155, 288, 291
Sau3AI GATC 2 cut(s) 326, 441
Sau96I GGNCC 1 cut(s) 108
ScrFI CCNGG 2 cut(s) 151, 256
SduI GDGCHC 1 cut(s) 247
SfcI CTRYAG 2 cut(s) 31, 471
SinI GGWCC 1 cut(s) 108
Sse9I AATT 3 cut(s) 192, 357, 450
SsiI CCGC 1 cut(s) 122
SspI AATATT 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 149, 254
StyI CCWWGG 1 cut(s) 216
TaqI TCGA 2 cut(s) 362, 516
TasI AATT 3 cut(s) 192, 357, 450
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 3 cut(s) 154, 287, 290
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 4 cut(s) 155, 185, 444, 449
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 2 cut(s) 192, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.