Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Reverse (-)

53402064 .. 53404635

Gene Structure 2572 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0361400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAATCCATTAGACCTCAACAACTTGCCTGATGATCATAATCGAGACAGAGATAGAGATAGAGACCGAGAAAATGGTAAACAATTCATCGACGGGGACGCCTCCTCCTCCTCAGGCCATAGAAAAAAGAAAAGCGGCGGAAAAGATGGAAAAGACGAGAGTGGGAAGGTCTACGAGTGTAGGTTTTGTTCCCTCAAGTTCTGCAAATCTCAAGCTCTTGGGGGACACATGAACCGCCACCGCCAAGAGAGGGAGACAGAGACACTAAACCGTGCTCGTCAGCTGGTCTTCAACAACGATAACCTAGCCGCTCCTGGCCCTCCACATTTAGGCTGCTGCCATCCGATGACATCTCCAGGAGGGTATCCCCACCCAATTGCAGGAGCTCCCGGTGACCCAACAACATTACCTCTGAGATTCCCTGCAAGAATGTTTTCTGGTTCTCCCTCCACACAACTCATACCACCACCGCCAGCAGCGGCCCCAGGTCAACCACCGCAAGCCGTACAGCCTTCGCAGCCCTACTTATACCCCTCTCCTTCACGCCCCATGTCCTACCCTTCTTCACACTATCAACACCAAAATGACTACTATGTCGGTCATGTCCTCGGTGGTAACAACACTAGTGCATCCCAGTATGGCCATCATCTGAATGTGAGCTATGGCGCCACGGCGGGTGTACAAGATCATCATCAGTCCAACAACAACGGTTACAACAACTATACTTGTATTGGTGCTCCGGTCACGCATAGCGGGGGGTTTGGGCAAGGCAGCAGCAGCCTGAGTTCGGAGTTGACTGGATCGGGAGGAGGAGGCGGTGTTGGTGGTGGAGCTATGAGCTACTCAGGAACACAACCCCCTCCACCTCCTTCCATCAACCGATTTCAACATGGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

299

Amino Acids

31.88

Weight (kDa)

8.49

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	593
AccB1I	GGYRCC	1 cut(s)	665
AccBSI	CCGCTC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	171
AclWI	GGATC	1 cut(s)	808
AcoI	YGGCCR	1 cut(s)	640
AcyI	GRCGYC	2 cut(s)	99, 666
AfaI	GTAC	2 cut(s)	507, 681
AfiI	CCNNNNNNNGG	4 cut(s)	250, 329, 380, 787
AgsI	TTSAA	2 cut(s)	292, 887
AhlI	ACTAGT	1 cut(s)	623
AjnI	CCWGG	3 cut(s)	313, 355, 484
AluBI	AGCT	6 cut(s)	215, 283, 386, 660, 833, 840
AluI	AGCT	6 cut(s)	215, 283, 386, 660, 833, 840
Alw21I	GWGCWC	3 cut(s)	277, 388, 739
Alw26I	GTCTC	4 cut(s)	39, 57, 248, 254
AlwI	GGATC	1 cut(s)	808
AoxI	GGCC	4 cut(s)	115, 316, 480, 640
ApeKI	GCWGC	7 cut(s)	333, 336, 476, 517, 771, 774, 777
Asp700I	GAANNNNTTC	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	2 cut(s)	317, 481
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	404
AxyI	CCTNAGG	1 cut(s)	112
BalI	TGGCCA	1 cut(s)	642
BanI	GGYRCC	1 cut(s)	665
BanII	GRGCYC	1 cut(s)	388
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	3 cut(s)	277, 388, 739
BbvI	GCAGC	7 cut(s)	320, 323, 488, 529, 783, 786, 789
BccI	CCATC	4 cut(s)	140, 348, 651, 881
BceAI	ACGGC	2 cut(s)	488, 687
BciT130I	CCWGG	3 cut(s)	315, 357, 486
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	4 cut(s)	39, 57, 248, 254
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	2 cut(s)	305, 624
BfoI	RGCGCY	1 cut(s)	669
BfuI	GTATCC	1 cut(s)	375
Bme1390I	CCNGG	4 cut(s)	315, 357, 390, 486
BmgT120I	GGNCC	2 cut(s)	317, 481
BmiI	GGNNCC	2 cut(s)	483, 667
BmrFI	CCNGG	4 cut(s)	315, 357, 390, 486
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	1 cut(s)	638
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	179, 195
BpuMI	CCSGG	1 cut(s)	390
BsaBI	GATNNNNATC	2 cut(s)	39, 690
BsaHI	GRCGYC	2 cut(s)	99, 666
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	3 cut(s)	484, 607, 669
BsaWI	WCCGGW	1 cut(s)	739
BsaXI	ACNNNNNCTCC	4 cut(s)	89, 119, 804, 834
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 329, 380, 787
Bse1I	ACTGG	2 cut(s)	634, 802
Bse21I	CCTNAGG	1 cut(s)	112
Bse8I	GATNNNNATC	2 cut(s)	39, 690
BseBI	CCWGG	3 cut(s)	315, 357, 486
BseDI	CCNNGG	3 cut(s)	484, 607, 669
BseGI	GGATG	2 cut(s)	340, 629
BseJI	GATNNNNATC	2 cut(s)	39, 690
BseLI	CCNNNNNNNGG	4 cut(s)	250, 329, 380, 787
BseMII	CTCAG	4 cut(s)	126, 404, 773, 858
BseNI	ACTGG	2 cut(s)	634, 802
BseRI	GAGGAG	5 cut(s)	94, 97, 100, 822, 825
BseXI	GCAGC	7 cut(s)	320, 323, 488, 529, 783, 786, 789
BshFI	GGCC	4 cut(s)	117, 318, 482, 642
BshNI	GGYRCC	1 cut(s)	665
BsiHKAI	GWGCWC	3 cut(s)	277, 388, 739
BsiSI	CCGG	2 cut(s)	390, 740
BslFI	GGGAC	2 cut(s)	110, 237
BslI	CCNNNNNNNGG	4 cut(s)	250, 329, 380, 787
BsmAI	GTCTC	4 cut(s)	39, 57, 248, 254
BsmFI	GGGAC	2 cut(s)	110, 237
BsnI	GGCC	4 cut(s)	117, 318, 482, 642
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	277, 388, 739
Bsp1407I	TGTACA	1 cut(s)	679
Bsp143I	GATC	3 cut(s)	34, 685, 800
BspANI	GGCC	4 cut(s)	117, 318, 482, 642
BspCNI	CTCAG	4 cut(s)	125, 405, 774, 857
BspLI	GGNNCC	2 cut(s)	483, 667
BspPI	GGATC	1 cut(s)	808
BspT107I	GGYRCC	1 cut(s)	665
BspTNI	GGTCTC	1 cut(s)	57
BsrBI	CCGCTC	1 cut(s)	311
BsrGI	TGTACA	1 cut(s)	679
BsrI	ACTGG	2 cut(s)	634, 802
BssECI	CCNNGG	3 cut(s)	484, 607, 669
BssMI	GATC	3 cut(s)	34, 685, 800
BssNI	GRCGYC	2 cut(s)	99, 666
Bst2UI	CCWGG	3 cut(s)	315, 357, 486
Bst4CI	ACNGT	2 cut(s)	272, 710
BstACI	GRCGYC	2 cut(s)	99, 666
BstAUI	TGTACA	1 cut(s)	679
BstC8I	GCNNGC	2 cut(s)	474, 501
BstDEI	CTNAG	4 cut(s)	112, 413, 782, 844
BstDSI	CCRYGG	1 cut(s)	669
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	340, 629
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	3 cut(s)	37, 688, 803
BstMAI	GTCTC	4 cut(s)	39, 57, 248, 254
BstMBI	GATC	3 cut(s)	34, 685, 800
BstMWI	GCNNNNNNNGC	2 cut(s)	517, 777
BstNI	CCWGG	3 cut(s)	315, 357, 486
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	4 cut(s)	313, 355, 388, 484
BstV1I	GCAGC	7 cut(s)	320, 323, 488, 529, 783, 786, 789
BstV2I	GAAGAC	1 cut(s)	280
Bsu36I	CCTNAGG	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	4 cut(s)	117, 318, 482, 642
BtgI	CCRYGG	1 cut(s)	669
BtsCI	GGATG	2 cut(s)	340, 629
Cac8I	GCNNGC	2 cut(s)	474, 501
CfoI	GCGC	1 cut(s)	668
Cfr13I	GGNCC	2 cut(s)	317, 481
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	506, 680
CviAII	CATG	4 cut(s)	229, 550, 602, 890
CviQI	GTAC	2 cut(s)	506, 680
DdeI	CTNAG	4 cut(s)	112, 413, 782, 844
DinI	GGCGCC	1 cut(s)	667
DpnI	GATC	3 cut(s)	36, 687, 802
DpnII	GATC	3 cut(s)	34, 685, 800
DrdI	GACNNNNNNGTC	1 cut(s)	593
DseDI	GACNNNNNNGTC	1 cut(s)	593
EaeI	YGGCCR	1 cut(s)	640
EciI	GGCGGA	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	386
Eco24I	GRGCYC	1 cut(s)	388
Eco31I	GGTCTC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	386
Eco81I	CCTNAGG	1 cut(s)	112
Eco91I	GGTNACC	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	313, 355, 484
EcoT38I	GRGCYC	1 cut(s)	388
EgeI	GGCGCC	1 cut(s)	667
EheI	GGCGCC	1 cut(s)	667
FaeI	CATG	4 cut(s)	232, 553, 605, 893
FaqI	GGGAC	2 cut(s)	110, 237
FatI	CATG	4 cut(s)	228, 549, 601, 889
FauI	CCCGC	2 cut(s)	667, 746
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	171
FokI	GGATG	2 cut(s)	327, 616
FriOI	GRGCYC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	305, 624
GlaI	GCGC	1 cut(s)	667
GsuI	CTGGAG	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	4 cut(s)	117, 318, 482, 642
HapII	CCGG	2 cut(s)	390, 740
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	668
Hin1I	GRCGYC	2 cut(s)	99, 666
Hin1II	CATG	4 cut(s)	232, 553, 605, 893
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	2 cut(s)	491, 795
HindII	GTYRAC	2 cut(s)	491, 795
HinfI	GANTC	2 cut(s)	4, 417
HpaII	CCGG	2 cut(s)	390, 740
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	5 cut(s)	80, 172, 491, 680, 795
Hpy188I	TCNGA	4 cut(s)	345, 414, 651, 790
Hpy188III	TCNNGA	3 cut(s)	44, 804, 846
Hpy8I	GTNNAC	5 cut(s)	80, 172, 491, 680, 795
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	5 cut(s)	160, 522, 549, 570, 879
HpyCH4III	ACNGT	2 cut(s)	272, 710
HpyCH4V	TGCA	4 cut(s)	204, 380, 425, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	517, 777
HpyF3I	CTNAG	4 cut(s)	112, 413, 782, 844
Hsp92I	GRCGYC	2 cut(s)	99, 666
Hsp92II	CATG	4 cut(s)	232, 553, 605, 893
HspAI	GCGC	1 cut(s)	666
KasI	GGCGCC	1 cut(s)	665
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	34, 685, 800
LmnI	GCTCC	5 cut(s)	316, 383, 391, 742, 830
Lsp1109I	GCAGC	7 cut(s)	320, 323, 488, 529, 783, 786, 789
LweI	GCATC	1 cut(s)	638
MaeI	CTAG	2 cut(s)	305, 624
MaeIII	GTNAC	4 cut(s)	392, 614, 710, 742
MalI	GATC	3 cut(s)	36, 687, 802
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	3 cut(s)	34, 685, 800
MboII	GAAGA	2 cut(s)	280, 555
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	3 cut(s)	277, 388, 739
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	2 cut(s)	83, 375
MluNI	TGGCCA	1 cut(s)	642
Mly113I	GGCGCC	1 cut(s)	666
MmeI	TCCRAC	1 cut(s)	723
Mox20I	TGGCCA	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	433
MscI	TGGCCA	1 cut(s)	642
MslI	CAYNNNNRTG	2 cut(s)	582, 651
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	2 cut(s)	283, 479
MspI	CCGG	2 cut(s)	390, 740
MspR9I	CCNGG	4 cut(s)	315, 357, 390, 486
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	3 cut(s)	315, 357, 486
MwoI	GCNNNNNNNGC	2 cut(s)	517, 777
NarI	GGCGCC	1 cut(s)	666
NciI	CCSGG	1 cut(s)	390
NdeII	GATC	3 cut(s)	34, 685, 800
NlaIII	CATG	4 cut(s)	232, 553, 605, 893
NlaIV	GGNNCC	2 cut(s)	483, 667
NmuCI	GTSAC	2 cut(s)	392, 742
PdmI	GAANNNNTTC	1 cut(s)	433
PfeI	GAWTC	2 cut(s)	4, 417
PfoI	TCCNGGA	1 cut(s)	355
PluTI	GGCGCC	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	313, 355, 484
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	313, 355, 484
PspN4I	GGNNCC	2 cut(s)	483, 667
PspPI	GGNCC	2 cut(s)	317, 481
PsrI	GAACNNNNNNTAC	2 cut(s)	172, 204
PvuII	CAGCTG	1 cut(s)	283
RsaI	GTAC	2 cut(s)	507, 681
RsaNI	GTAC	2 cut(s)	506, 680
RseI	CAYNNNNRTG	2 cut(s)	582, 651
SacI	GAGCTC	1 cut(s)	388
Sau3AI	GATC	3 cut(s)	34, 685, 800
Sau96I	GGNCC	2 cut(s)	317, 481
ScrFI	CCNGG	4 cut(s)	315, 357, 390, 486
SduI	GDGCHC	3 cut(s)	277, 388, 739
SfaNI	GCATC	1 cut(s)	638
SfoI	GGCGCC	1 cut(s)	667
SmiMI	CAYNNNNRTG	2 cut(s)	582, 651
SmlI	CTYRAG	2 cut(s)	194, 210
SmoI	CTYRAG	2 cut(s)	194, 210
SpeI	ACTAGT	1 cut(s)	623
Sse9I	AATT	2 cut(s)	83, 375
SspDI	GGCGCC	1 cut(s)	665
SspMI	CTAG	2 cut(s)	305, 624
SstI	GAGCTC	1 cut(s)	388
StyD4I	CCNGG	4 cut(s)	313, 355, 388, 484
TaaI	ACNGT	2 cut(s)	272, 710
TaqI	TCGA	2 cut(s)	43, 90
TaqII	GACCGA	2 cut(s)	81, 587
TasI	AATT	2 cut(s)	83, 375
TatI	WGTACW	1 cut(s)	679
TauI	GCSGC	3 cut(s)	138, 311, 482
TfiI	GAWTC	2 cut(s)	4, 417
TseFI	GTSAC	2 cut(s)	392, 742
TseI	GCWGC	7 cut(s)	333, 336, 476, 517, 771, 774, 777
Tsp45I	GTSAC	2 cut(s)	392, 742
TspDTI	ATGAA	3 cut(s)	17, 76, 245
XmiI	GTMKAC	1 cut(s)	171
XmnI	GAANNNNTTC	1 cut(s)	433
XspI	CTAG	2 cut(s)	305, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.