RLG00000005739

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0003272
Physical Location & Seq
Reverse (-)
1356735 .. 1358462
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005739

Sequence Viewer

Length: 804 bp
ATGAAATTACTATGCTGCATGCTGGTAATCGGCATGGGAACTTCATCGCACCCTCCGGTGGACCGTCAAACCGCCAAGGCTGCCATTCTTGAAGCAATCAAAGTGGGTTACCGCCACTCTGACACCGCCCTTGCTTATGGTAATTCAGAGCAACATTTGGGGGAAGCTATTGCTGATGCTCTACGTCTTGGACTCATCGAGTCGAGGGATGAGCTCTTCATCACAACCAAGCTTTGGGCCAGCTTTGCTGAAAGAGATCTTGTGCTGCCTGCAATCAACACCAGTTTAAGGAATCTTCAAATGGAGTATGTTGATATGCACATAATACATTGGCCATTAATTCAAATTGGGGTACAAGTACAACCCCTCGATATCAAATCTGTTTGGGAGGGCATGGAAGAATGCAAGAAACTCGGCCTAGCAAGGGGCATTGGCGTCAGTAATTTCACCTCCAAGATACTCGAGGACCTCCTCTCCATGGCCAAAATCCCTCCTGCCATCAATCATTTGGAGATGAGCCCAGCTTGGCAGGTGAAGAAACTGAGGGAGTTTTGTAAGGCAAAAGGGATACATGTCACAGCTTACTCTCCACTGGGTGCATCTGGGACTTCATGGGGAGACGATAGGGTTTATGAGCAAGGGGTGAGCACGGTAGCGAAAAGCTACAACAAAGGAAGTATGAGGCAGAACCTTGGTATCTTCGTCTGGTCCTTGACTGAGGAGTTGCAGAAGATGAGTCGTCCTCCACACAGATCAAAGGCTTCGTTTTTGCTACACTTTTGGGACAGTAGATCTTCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

268

Amino Acids

29.82

Weight (kDa)

8.29

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 10 - 202 1e-42 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 234
AciI CCGC 3 cut(s) 72, 112, 126
AcoI YGGCCR 2 cut(s) 332, 480
AcuI CTGAAG 1 cut(s) 780
AcyI GRCGYC 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 596
AfaI GTAC 2 cut(s) 354, 360
AfiI CCNNNNNNNGG 5 cut(s) 58, 234, 288, 424, 478
AflIII ACRYGT 1 cut(s) 571
AgsI TTSAA 3 cut(s) 92, 299, 344
AluBI AGCT 7 cut(s) 167, 214, 232, 243, 524, 581, 663
AluI AGCT 7 cut(s) 167, 214, 232, 243, 524, 581, 663
Alw21I GWGCWC 2 cut(s) 216, 650
Alw26I GTCTC 1 cut(s) 612
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 4 cut(s) 237, 332, 415, 480
ApeKI GCWGC 3 cut(s) 15, 80, 265
AseI ATTAAT 1 cut(s) 338
AspS9I GGNCC 4 cut(s) 61, 237, 466, 708
AsuHPI GGTGA 3 cut(s) 439, 544, 655
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 3 cut(s) 61, 466, 708
BaeI ACNNNNGTAYC 2 cut(s) 679, 712
BalI TGGCCA 2 cut(s) 334, 482
BanII GRGCYC 2 cut(s) 216, 521
Bbv12I GWGCWC 2 cut(s) 216, 650
BbvI GCAGC 3 cut(s) 2, 67, 252
BccI CCATC 1 cut(s) 506
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciVI GTATCC 1 cut(s) 561
BcoDI GTCTC 1 cut(s) 612
BfaI CTAG 1 cut(s) 419
BfuAI ACCTGC 1 cut(s) 520
BfuI GTATCC 1 cut(s) 561
BglII AGATCT 2 cut(s) 256, 791
BisI GCNGC 3 cut(s) 16, 81, 266
BlsI GCNGC 3 cut(s) 17, 82, 267
Bme18I GGWCC 3 cut(s) 61, 466, 708
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 4 cut(s) 61, 237, 466, 708
BmrI ACTGGG 1 cut(s) 602
BmsI GCATC 2 cut(s) 166, 608
BmuI ACTGGG 1 cut(s) 602
BplI GAGNNNNNCTC 2 cut(s) 727, 759
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 3 cut(s) 75, 477, 691
BsaWI WCCGGW 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 234, 288, 424, 478
Bse1I ACTGG 2 cut(s) 282, 597
BseDI CCNNGG 3 cut(s) 75, 477, 691
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 5 cut(s) 58, 234, 288, 424, 478
BseMII CTCAG 2 cut(s) 533, 708
BseNI ACTGG 2 cut(s) 282, 597
BseRI GAGGAG 2 cut(s) 461, 734
BseXI GCAGC 3 cut(s) 2, 67, 252
BseYI CCCAGC 1 cut(s) 520
BshFI GGCC 4 cut(s) 239, 334, 417, 482
BsiHKAI GWGCWC 2 cut(s) 216, 650
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 619, 797
BslI CCNNNNNNNGG 5 cut(s) 58, 234, 288, 424, 478
BsmAI GTCTC 1 cut(s) 612
BsmBI CGTCTC 1 cut(s) 612
BsmFI GGGAC 2 cut(s) 619, 797
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 4 cut(s) 239, 334, 417, 482
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 3 cut(s) 216, 521, 650
Bsp143I GATC 3 cut(s) 256, 752, 791
Bsp19I CCATGG 1 cut(s) 477
BspACI CCGC 3 cut(s) 72, 112, 126
BspANI GGCC 4 cut(s) 239, 334, 417, 482
BspCNI CTCAG 2 cut(s) 534, 709
BspMI ACCTGC 1 cut(s) 520
BspQI GCTCTTC 1 cut(s) 221
BsrI ACTGG 2 cut(s) 282, 597
BssECI CCNNGG 3 cut(s) 75, 477, 691
BssMI GATC 3 cut(s) 256, 752, 791
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 3 cut(s) 75, 477, 691
Bst4CI ACNGT 3 cut(s) 65, 652, 788
Bst6I CTCTTC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 435
BstC8I GCNNGC 3 cut(s) 20, 241, 270
BstDEI CTNAG 2 cut(s) 542, 717
BstDSI CCRYGG 1 cut(s) 477
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 259, 755, 794
BstMAI GTCTC 1 cut(s) 612
BstMBI GATC 3 cut(s) 256, 752, 791
BstMWI GCNNNNNNNGC 2 cut(s) 80, 245
BstNSI RCATGY 2 cut(s) 22, 575
BstPI GGTNACC 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 2, 67, 252
BstX2I RGATCY 2 cut(s) 256, 791
BstYI RGATCY 2 cut(s) 256, 791
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 4 cut(s) 239, 334, 417, 482
BtgI CCRYGG 1 cut(s) 477
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 590
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 3 cut(s) 20, 241, 270
Cfr13I GGNCC 4 cut(s) 61, 237, 466, 708
CseI GACGC 1 cut(s) 424
Csp6I GTAC 2 cut(s) 353, 359
CspCI CAANNNNNGTGG 2 cut(s) 84, 119
CviAII CATG 6 cut(s) 19, 34, 394, 478, 572, 612
CviQI GTAC 2 cut(s) 353, 359
DdeI CTNAG 2 cut(s) 542, 717
DpnI GATC 3 cut(s) 258, 754, 793
DpnII GATC 3 cut(s) 256, 752, 791
DraIII CACNNNGTG 1 cut(s) 596
EaeI YGGCCR 2 cut(s) 332, 480
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 3 cut(s) 75, 477, 691
Eco24I GRGCYC 2 cut(s) 216, 521
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 3 cut(s) 61, 466, 708
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 780
Eco88I CYCGRG 1 cut(s) 461
Eco91I GGTNACC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 466
EcoO65I GGTNACC 1 cut(s) 107
EcoRV GATATC 1 cut(s) 373
EcoT14I CCWWGG 3 cut(s) 75, 477, 691
EcoT38I GRGCYC 2 cut(s) 216, 521
ErhI CCWWGG 3 cut(s) 75, 477, 691
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 6 cut(s) 22, 37, 397, 481, 575, 615
FaqI GGGAC 2 cut(s) 619, 797
FatI CATG 6 cut(s) 18, 33, 393, 477, 571, 611
Fnu4HI GCNGC 3 cut(s) 16, 81, 266
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 2 cut(s) 216, 521
Fsp4HI GCNGC 3 cut(s) 16, 81, 266
FspBI CTAG 1 cut(s) 419
GluI GCNGC 3 cut(s) 16, 81, 266
GsaI CCCAGC 1 cut(s) 524
HaeIII GGCC 4 cut(s) 239, 334, 417, 482
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 424
Hin1I GRCGYC 1 cut(s) 435
Hin1II CATG 6 cut(s) 22, 37, 397, 481, 575, 615
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 4 cut(s) 192, 200, 292, 736
HpaII CCGG 1 cut(s) 56
HphI GGTGA 3 cut(s) 439, 544, 655
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 121, 148, 799
Hpy188III TCNNGA 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 61
HpyCH4III ACNGT 3 cut(s) 65, 652, 788
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 6 cut(s) 18, 272, 319, 405, 599, 727
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 245
HpyF3I CTNAG 2 cut(s) 542, 717
HpySE526I ACGT 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 435
Hsp92II CATG 6 cut(s) 22, 37, 397, 481, 575, 615
Kzo9I GATC 3 cut(s) 256, 752, 791
LguI GCTCTTC 1 cut(s) 221
Lsp1109I GCAGC 3 cut(s) 2, 67, 252
LweI GCATC 2 cut(s) 166, 608
MaeI CTAG 1 cut(s) 419
MaeII ACGT 1 cut(s) 184
MaeIII GTNAC 2 cut(s) 107, 574
MalI GATC 3 cut(s) 258, 754, 793
MboI GATC 3 cut(s) 256, 752, 791
MboII GAAGA 7 cut(s) 208, 287, 410, 547, 691, 742, 786
MflI RGATCY 2 cut(s) 256, 791
MhlI GDGCHC 3 cut(s) 216, 521, 650
MlsI TGGCCA 2 cut(s) 334, 482
MluCI AATT 5 cut(s) 5, 142, 339, 345, 442
MluNI TGGCCA 2 cut(s) 334, 482
MlyI GAGTC 3 cut(s) 186, 209, 745
Mox20I TGGCCA 2 cut(s) 334, 482
MscI TGGCCA 2 cut(s) 334, 482
MseI TTAA 2 cut(s) 287, 338
Msp20I TGGCCA 2 cut(s) 334, 482
MspI CCGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 407
MwoI GCNNNNNNNGC 2 cut(s) 80, 245
NcoI CCATGG 1 cut(s) 477
NdeII GATC 3 cut(s) 256, 752, 791
NlaIII CATG 6 cut(s) 22, 37, 397, 481, 575, 615
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 1 cut(s) 574
NspI RCATGY 2 cut(s) 22, 575
PaeI GCATGC 1 cut(s) 22
PaeR7I CTCGAG 1 cut(s) 461
PaqCI CACCTGC 1 cut(s) 520
PciI ACATGT 1 cut(s) 571
PciSI GCTCTTC 1 cut(s) 221
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 3 cut(s) 17, 82, 267
PleI GAGTC 3 cut(s) 186, 208, 744
PpsI GAGTC 3 cut(s) 186, 208, 744
PpuMI RGGWCCY 1 cut(s) 466
PscI ACATGT 1 cut(s) 571
PshBI ATTAAT 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 466
PspEI GGTNACC 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 520
PspPI GGNCC 4 cut(s) 61, 237, 466, 708
PspPPI RGGWCCY 1 cut(s) 466
PspXI VCTCGAGB 1 cut(s) 461
PsuI RGATCY 2 cut(s) 256, 791
RsaI GTAC 2 cut(s) 354, 360
RsaNI GTAC 2 cut(s) 353, 359
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 287, 338
SatI GCNGC 3 cut(s) 16, 81, 266
Sau3AI GATC 3 cut(s) 256, 752, 791
Sau96I GGNCC 4 cut(s) 61, 237, 466, 708
SchI GAGTC 3 cut(s) 186, 209, 745
SduI GDGCHC 3 cut(s) 216, 521, 650
SfaNI GCATC 2 cut(s) 166, 608
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 3 cut(s) 61, 466, 708
SlaI CTCGAG 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SphI GCATGC 1 cut(s) 22
Sse9I AATT 5 cut(s) 5, 142, 339, 345, 442
SsiI CCGC 3 cut(s) 72, 112, 126
SspMI CTAG 1 cut(s) 419
SstI GAGCTC 1 cut(s) 216
StyI CCWWGG 3 cut(s) 75, 477, 691
TaaI ACNGT 3 cut(s) 65, 652, 788
TaiI ACGT 1 cut(s) 187
TaqI TCGA 4 cut(s) 198, 203, 369, 462
TasI AATT 5 cut(s) 5, 142, 339, 345, 442
TatI WGTACW 1 cut(s) 358
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 2 cut(s) 287, 338
Tru9I TTAA 2 cut(s) 287, 338
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 3 cut(s) 15, 80, 265
Tsp45I GTSAC 1 cut(s) 574
TspDTI ATGAA 4 cut(s) 17, 33, 208, 600
TspRI CASTG 1 cut(s) 597
Van91I CCANNNNNTGG 1 cut(s) 234
VpaK11BI GGWCC 3 cut(s) 61, 466, 708
VspI ATTAAT 1 cut(s) 338
XceI RCATGY 2 cut(s) 22, 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 461
XspI CTAG 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.