Rh4DG431100

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003272
Physical Location & Seq
Forward (+)
63546094 .. 63546734
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG431100.1

Sequence Viewer

Length: 354 bp
ATGGGAACTTCATCGCACCCTCCGGTACAGCAACATTTGGGGGAAGCTATTGCTGATGCTCTACGTCTTGGACTCATCGAGTCGAGGGATGAGCTCTTCATCACAACCAAGCTTTGGGCCAGCTTTGCTGAAAGAGATCTTGTGCTGCCTGCAATCAACACCAGTCTAAGGAATCTTCAAATGGAGTATGTTGATATGTACGTAATACATTGGCCATTAATTCAAATTGGGGCGAGAGATGACGGGTATGCCTCTCGACGAAGATCAGGTACAACCCCTCGATATCAAATCTGTTTGGGAGGGCATGGAAGAATGCAAGAAACTCGGCCTAGCAAGGGGCATTGGCGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

117

Amino Acids

13.34

Weight (kDa)

8.98

Isoelectric Point (pI)

53.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 10 - 72 2e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 346
AfaI GTAC 3 cut(s) 27, 200, 271
AfiI CCNNNNNNNGG 3 cut(s) 114, 168, 335
AgsI TTSAA 2 cut(s) 179, 224
AluBI AGCT 4 cut(s) 47, 94, 112, 123
AluI AGCT 4 cut(s) 47, 94, 112, 123
Alw21I GWGCWC 1 cut(s) 96
AoxI GGCC 3 cut(s) 117, 212, 326
ApeKI GCWGC 1 cut(s) 145
AseI ATTAAT 1 cut(s) 218
AspS9I GGNCC 1 cut(s) 117
BalI TGGCCA 1 cut(s) 214
BanII GRGCYC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BfaI CTAG 1 cut(s) 330
BglII AGATCT 1 cut(s) 136
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmgT120I GGNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 346
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 168, 335
Bse1I ACTGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 3 cut(s) 114, 168, 335
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 3 cut(s) 119, 214, 328
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 3 cut(s) 114, 168, 335
BsmI GAATGC 1 cut(s) 318
BsnI GGCC 3 cut(s) 119, 214, 328
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 136, 263
BspANI GGCC 3 cut(s) 119, 214, 328
BspQI GCTCTTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 162
BssMI GATC 2 cut(s) 136, 263
BssNI GRCGYC 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 121, 150
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 2 cut(s) 139, 266
BstMBI GATC 2 cut(s) 136, 263
BstMWI GCNNNNNNNGC 1 cut(s) 125
BstSNI TACGTA 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
BsuRI GGCC 3 cut(s) 119, 214, 328
BtsCI GGATG 1 cut(s) 94
Cac8I GCNNGC 2 cut(s) 121, 150
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 335
Csp6I GTAC 3 cut(s) 26, 199, 270
CviAII CATG 1 cut(s) 305
CviJI RGCY 7 cut(s) 47, 94, 112, 119, 123, 214, 328
CviKI_1 RGCY 7 cut(s) 47, 94, 112, 119, 123, 214, 328
CviQI GTAC 3 cut(s) 26, 199, 270
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 138, 265
DpnII GATC 2 cut(s) 136, 263
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Ecl136II GAGCTC 1 cut(s) 94
Eco105I TACGTA 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 96
Eco32I GATATC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRV GATATC 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 96
FaeI CATG 1 cut(s) 308
FaiI YATR 4 cut(s) 189, 197, 249, 306
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 146
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 146
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 146
HaeIII GGCC 3 cut(s) 119, 214, 328
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 335
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 1 cut(s) 308
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 72, 80, 172
HpaII CCGG 1 cut(s) 23
Hpy188III TCNNGA 1 cut(s) 255
Hpy99I CGWCG 1 cut(s) 261
HpyCH4IV ACGT 2 cut(s) 64, 201
HpyCH4V TGCA 2 cut(s) 152, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 2 cut(s) 64, 201
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 136, 263
LguI GCTCTTC 1 cut(s) 101
LpnPI CCDG 5 cut(s) 36, 133, 162, 175, 252
Lsp1109I GCAGC 1 cut(s) 132
LweI GCATC 1 cut(s) 46
MaeI CTAG 1 cut(s) 330
MaeII ACGT 2 cut(s) 64, 201
MalI GATC 2 cut(s) 138, 265
MboI GATC 2 cut(s) 136, 263
MboII GAAGA 4 cut(s) 88, 167, 273, 321
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 214
MluCI AATT 2 cut(s) 219, 225
MluNI TGGCCA 1 cut(s) 214
MlyI GAGTC 2 cut(s) 66, 89
MnlI CCTC 5 cut(s) 30, 78, 262, 288, 293
Mox20I TGGCCA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 214
MseI TTAA 1 cut(s) 218
Msp20I TGGCCA 1 cut(s) 214
MspI CCGG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 125
NdeII GATC 2 cut(s) 136, 263
NlaIII CATG 1 cut(s) 308
NmeAIII GCCGAG 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 101
PctI GAATGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 172
PflMI CCANNNNNTGG 1 cut(s) 114
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 2 cut(s) 66, 88
PpsI GAGTC 2 cut(s) 66, 88
Ppu21I YACGTR 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 218
Psp124BI GAGCTC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 3 cut(s) 27, 200, 271
RsaNI GTAC 3 cut(s) 26, 199, 270
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 136, 263
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 2 cut(s) 66, 89
SduI GDGCHC 1 cut(s) 96
SetI ASST 7 cut(s) 49, 67, 96, 114, 125, 204, 271
SfaNI GCATC 1 cut(s) 46
SnaBI TACGTA 1 cut(s) 202
Sse9I AATT 2 cut(s) 219, 225
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 96
TaiI ACGT 2 cut(s) 67, 204
TaqI TCGA 4 cut(s) 78, 83, 256, 280
TasI AATT 2 cut(s) 219, 225
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 88
Van91I CCANNNNNTGG 1 cut(s) 114
VspI ATTAAT 1 cut(s) 218
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.