Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001062.1

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Reverse (-)

59940 .. 61326

Gene Structure 1387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001062.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgggaacttcatcgcaccctccggtggaccgtcaaacggccaaggctgccattcttgaagcaatcaaagtgggttaccgccactttgacaccgcctttgcttatggtaattcagagcaacatttgggggaagctattgctgatgctctacgtcttggactcatcgagtcgagggatgagctcttcatcacaaccaagctttgggccagctttgctgaaagagatcttgtgctgcctgcaatcagcaccagtttaaggaatcttcaaatggagtatgttgatatgtacataatacattggccattcaaattggggcgagagatgacgggtatgcctctcgacgaagatcaggtacaacccctcgatatcaaatctgtttgggagggcatggaagaatgcaagaaactcggccttgcgaggggcattggcgtcagtaatttcacctccaagatgctcgaggagctcctctccatcgccaaaatccctcctgccgtcaatcatgtggagatgagcccagcttggcaggtgaagaaactgagggagttttgcgaggcaaaaaggatacatgtcacagcttactctccactgggtgcatctgggacttcatggggagacgatagggttttaggctcacaagtcctccaacagattgccaaagcaaaagggaaaacaactgctcagatatcgttgagatgggtatatgagcaaggggtgagcatggtagcgaaaagctacaacaaagaaagaatgaggcagaaccttgatatcttcgactggtccttgactgaggatgagttgcagaagataagtcgtcttccacagatcaaaggcttcgtttttgcttcacttttgggacagcatgaactactgcttcagattgacagtggattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

297

Amino Acids

33.41

Weight (kDa)

6.2

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	514
Acc36I	ACCTGC	1 cut(s)	514
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	2 cut(s)	79, 93
AcoI	YGGCCR	2 cut(s)	39, 299
AcuI	CTGAAG	1 cut(s)	857
AcyI	GRCGYC	1 cut(s)	429
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	2 cut(s)	287, 354
AfiI	CCNNNNNNNGG	5 cut(s)	25, 37, 201, 255, 418
AflIII	ACRYGT	1 cut(s)	565
AgsI	TTSAA	3 cut(s)	59, 266, 307
AluBI	AGCT	8 cut(s)	134, 181, 199, 210, 463, 518, 575, 732
AluI	AGCT	8 cut(s)	134, 181, 199, 210, 463, 518, 575, 732
Alw21I	GWGCWC	2 cut(s)	183, 465
Alw26I	GTCTC	1 cut(s)	606
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	4 cut(s)	39, 204, 299, 409
ApeKI	GCWGC	2 cut(s)	47, 232
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AspS9I	GGNCC	3 cut(s)	28, 204, 777
AsuHPI	GGTGA	3 cut(s)	433, 538, 724
AvaI	CYCGRG	1 cut(s)	455
AvaII	GGWCC	2 cut(s)	28, 777
BalI	TGGCCA	1 cut(s)	301
BanII	GRGCYC	3 cut(s)	183, 465, 515
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	2 cut(s)	183, 465
BbvI	GCAGC	2 cut(s)	34, 219
BccI	CCATC	2 cut(s)	479, 687
BceAI	ACGGC	2 cut(s)	54, 476
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciVI	GTATCC	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	606
BfuAI	ACCTGC	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	555
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	48, 233
BlsI	GCNGC	2 cut(s)	49, 234
Bme18I	GGWCC	2 cut(s)	28, 777
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	3 cut(s)	28, 204, 777
BmrI	ACTGGG	1 cut(s)	596
BmsI	GCATC	3 cut(s)	133, 441, 602
BmuI	ACTGGG	1 cut(s)	596
BpiI	GAAGAC	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BsaHI	GRCGYC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	42
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	624, 654
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 37, 201, 255, 418
Bse1I	ACTGG	3 cut(s)	249, 591, 779
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	2 cut(s)	181, 796
BseLI	CCNNNNNNNGG	5 cut(s)	25, 37, 201, 255, 418
BseMII	CTCAG	3 cut(s)	527, 692, 777
BseNI	ACTGG	3 cut(s)	249, 591, 779
BseRI	GAGGAG	2 cut(s)	455, 473
BseXI	GCAGC	2 cut(s)	34, 219
BseYI	CCCAGC	1 cut(s)	514
BshFI	GGCC	4 cut(s)	41, 206, 301, 411
BsiHKAI	GWGCWC	2 cut(s)	183, 465
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	2 cut(s)	613, 867
BslI	CCNNNNNNNGG	5 cut(s)	25, 37, 201, 255, 418
BsmAI	GTCTC	1 cut(s)	606
BsmBI	CGTCTC	1 cut(s)	606
BsmFI	GGGAC	2 cut(s)	613, 867
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	4 cut(s)	41, 206, 301, 411
BsoBI	CYCGRG	1 cut(s)	455
Bsp1286I	GDGCHC	3 cut(s)	183, 465, 515
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	3 cut(s)	223, 346, 822
BspACI	CCGC	2 cut(s)	79, 93
BspANI	GGCC	4 cut(s)	41, 206, 301, 411
BspCNI	CTCAG	3 cut(s)	528, 691, 778
BspMI	ACCTGC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	188
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	3 cut(s)	249, 591, 779
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	223, 346, 822
BssNI	GRCGYC	1 cut(s)	429
BssT1I	CCWWGG	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	32, 884
Bst6I	CTCTTC	1 cut(s)	188
BstACI	GRCGYC	1 cut(s)	429
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	208, 237
BstDEI	CTNAG	3 cut(s)	536, 678, 786
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	181, 796
BstKTI	GATC	3 cut(s)	226, 349, 825
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	3 cut(s)	223, 346, 822
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 212, 460
BstNSI	RCATGY	1 cut(s)	569
BstPI	GGTNACC	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	34, 219
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	41, 206, 301, 411
BtgZI	GCGATG	1 cut(s)	457
BtsCI	GGATG	2 cut(s)	181, 796
BtsIMutI	CAGTG	2 cut(s)	584, 889
BveI	ACCTGC	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	208, 237
Cfr13I	GGNCC	3 cut(s)	28, 204, 777
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	286, 353
CspCI	CAANNNNNGTGG	2 cut(s)	51, 86
CviAII	CATG	6 cut(s)	388, 500, 566, 606, 718, 860
CviQI	GTAC	2 cut(s)	286, 353
DdeI	CTNAG	3 cut(s)	536, 678, 786
DpnI	GATC	3 cut(s)	225, 348, 824
DpnII	GATC	3 cut(s)	223, 346, 822
DraIII	CACNNNGTG	1 cut(s)	590
EaeI	YGGCCR	2 cut(s)	39, 299
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
Ecl136II	GAGCTC	2 cut(s)	181, 463
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	3 cut(s)	183, 465, 515
Eco32I	GATATC	3 cut(s)	367, 684, 766
Eco47I	GGWCC	2 cut(s)	28, 777
Eco53kI	GAGCTC	2 cut(s)	181, 463
Eco57I	CTGAAG	1 cut(s)	857
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	2 cut(s)	181, 463
EcoO65I	GGTNACC	1 cut(s)	74
EcoRV	GATATC	3 cut(s)	367, 684, 766
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	3 cut(s)	183, 465, 515
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	606
FaeI	CATG	6 cut(s)	391, 503, 569, 609, 721, 863
FaqI	GGGAC	2 cut(s)	613, 867
FatI	CATG	6 cut(s)	387, 499, 565, 605, 717, 859
Fnu4HI	GCNGC	2 cut(s)	48, 233
FokI	GGATG	2 cut(s)	188, 803
FriOI	GRGCYC	3 cut(s)	183, 465, 515
Fsp4HI	GCNGC	2 cut(s)	48, 233
GluI	GCNGC	2 cut(s)	48, 233
GsaI	CCCAGC	1 cut(s)	518
HaeIII	GGCC	4 cut(s)	41, 206, 301, 411
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	418
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	6 cut(s)	391, 503, 569, 609, 721, 863
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	3 cut(s)	159, 167, 259
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	3 cut(s)	433, 538, 724
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	3 cut(s)	115, 681, 876
Hpy188III	TCNNGA	2 cut(s)	56, 338
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	1 cut(s)	344
HpyCH4III	ACNGT	2 cut(s)	32, 884
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	239, 399, 593, 799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 212, 460
HpyF3I	CTNAG	3 cut(s)	536, 678, 786
HpySE526I	ACGT	1 cut(s)	151
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	6 cut(s)	391, 503, 569, 609, 721, 863
Kzo9I	GATC	3 cut(s)	223, 346, 822
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	2 cut(s)	460, 468
Lsp1109I	GCAGC	2 cut(s)	34, 219
LweI	GCATC	3 cut(s)	133, 441, 602
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	2 cut(s)	74, 568
MalI	GATC	3 cut(s)	225, 348, 824
MboI	GATC	3 cut(s)	223, 346, 822
MboII	GAAGA	8 cut(s)	175, 254, 356, 404, 541, 760, 806, 814
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	3 cut(s)	183, 465, 515
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	3 cut(s)	109, 308, 436
MluNI	TGGCCA	1 cut(s)	301
MlyI	GAGTC	2 cut(s)	153, 176
MmeI	TCCRAC	1 cut(s)	667
Mox20I	TGGCCA	1 cut(s)	301
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	1 cut(s)	254
Msp20I	TGGCCA	1 cut(s)	301
MspI	CCGG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	47, 212, 460
NdeII	GATC	3 cut(s)	223, 346, 822
NlaIII	CATG	6 cut(s)	391, 503, 569, 609, 721, 863
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	568
NspI	RCATGY	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	455
PaqCI	CACCTGC	1 cut(s)	514
PciI	ACATGT	1 cut(s)	565
PciSI	GCTCTTC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	401
PfeI	GAWTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	49, 234
PleI	GAGTC	2 cut(s)	153, 175
PpsI	GAGTC	2 cut(s)	153, 175
PscI	ACATGT	1 cut(s)	565
Psp124BI	GAGCTC	2 cut(s)	183, 465
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	514
PspPI	GGNCC	3 cut(s)	28, 204, 777
PspXI	VCTCGAGB	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	2 cut(s)	287, 354
RsaNI	GTAC	2 cut(s)	286, 353
SacI	GAGCTC	2 cut(s)	183, 465
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	2 cut(s)	48, 233
Sau3AI	GATC	3 cut(s)	223, 346, 822
Sau96I	GGNCC	3 cut(s)	28, 204, 777
SchI	GAGTC	2 cut(s)	153, 176
SduI	GDGCHC	3 cut(s)	183, 465, 515
SfaNI	GCATC	3 cut(s)	133, 441, 602
Sfr274I	CTCGAG	1 cut(s)	455
SinI	GGWCC	2 cut(s)	28, 777
SlaI	CTCGAG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	3 cut(s)	109, 308, 436
SsiI	CCGC	2 cut(s)	79, 93
SstI	GAGCTC	2 cut(s)	183, 465
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	32, 884
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	6 cut(s)	165, 170, 339, 363, 456, 771
TasI	AATT	3 cut(s)	109, 308, 436
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	2 cut(s)	591, 889
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	2 cut(s)	47, 232
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	3 cut(s)	175, 594, 876
TspRI	CASTG	2 cut(s)	591, 889
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	28, 777
XceI	RCATGY	1 cut(s)	569
XhoI	CTCGAG	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.