Rh4BG434900

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0003272
Physical Location & Seq
Forward (+)
57655516 .. 57656276
761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG434900.1

Sequence Viewer

Length: 468 bp
ATGCAAGACATAGGTGGTAGCTGCTGTGTCTGCCAAGTTAATTTAGAGGTGACATCATTAAAGGTTTCTTCAGTAAAACTAGGATCATGTGGTGATGAAATTACTATGCCAGTAATCGGCATGGGAACTTCATCGCACCCTCCGCAACATTTGGGGGAAGCTATTGCTGATGCTCTACGTCTTGGACTCATCGAGTCGAGGGATGAGCTCTTCATCACAACCAAGCTTTGGGCCAGCTTTGCTGAAAGAGATCTTGTGCTGCCTGCAATCAACACCAGTCTAAGGAATCTTCAAATGGAGTATGTTGATATGTACGTAATACATTGGCCATTAATTCAAATTGGGGCGAGAGATGACGGGTATGCCTCTCGACGAAGATCAGGTACAACCCCTCGATATCAAATCTGTTTGGGAGGGCATGGAAGAATGCAAGAAACTCGGCCTAGCAAGGGGCATTGGCGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

155

Amino Acids

17.2

Weight (kDa)

6.95

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 51 - 110 7.8e-10 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 228
AciI CCGC 1 cut(s) 143
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 460
AfaI GTAC 2 cut(s) 314, 385
AfiI CCNNNNNNNGG 4 cut(s) 116, 228, 282, 449
AgsI TTSAA 2 cut(s) 293, 338
AluBI AGCT 5 cut(s) 21, 161, 208, 226, 237
AluI AGCT 5 cut(s) 21, 161, 208, 226, 237
Alw21I GWGCWC 1 cut(s) 210
AlwI GGATC 1 cut(s) 91
AoxI GGCC 3 cut(s) 231, 326, 440
ApeKI GCWGC 2 cut(s) 21, 259
AseI ATTAAT 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 61, 104
BalI TGGCCA 1 cut(s) 328
BanII GRGCYC 1 cut(s) 210
BarI GAAGNNNNNNTAC 2 cut(s) 367, 399
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 2 cut(s) 8, 246
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BfaI CTAG 2 cut(s) 80, 444
BglII AGATCT 1 cut(s) 250
BisI GCNGC 2 cut(s) 22, 260
BlsI GCNGC 2 cut(s) 23, 261
BmgT120I GGNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 160
BsaAI YACGTR 1 cut(s) 316
BsaHI GRCGYC 1 cut(s) 460
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 228, 282, 449
Bse1I ACTGG 2 cut(s) 110, 276
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 4 cut(s) 116, 228, 282, 449
BseNI ACTGG 2 cut(s) 110, 276
BseXI GCAGC 2 cut(s) 8, 246
BshFI GGCC 3 cut(s) 233, 328, 442
BsiHKAI GWGCWC 1 cut(s) 210
BslI CCNNNNNNNGG 4 cut(s) 116, 228, 282, 449
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 3 cut(s) 233, 328, 442
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 83, 250, 377
BspACI CCGC 1 cut(s) 143
BspANI GGCC 3 cut(s) 233, 328, 442
BspPI GGATC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 215
BsrI ACTGG 2 cut(s) 110, 276
BssMI GATC 3 cut(s) 83, 250, 377
BssNI GRCGYC 1 cut(s) 460
Bst6I CTCTTC 1 cut(s) 215
BstACI GRCGYC 1 cut(s) 460
BstBAI YACGTR 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 235, 264
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 3 cut(s) 86, 253, 380
BstMBI GATC 3 cut(s) 83, 250, 377
BstMWI GCNNNNNNNGC 3 cut(s) 30, 142, 239
BstSNI TACGTA 1 cut(s) 316
BstV1I GCAGC 2 cut(s) 8, 246
BstX2I RGATCY 1 cut(s) 250
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 3 cut(s) 233, 328, 442
BtgZI GCGATG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 235, 264
Cfr13I GGNCC 1 cut(s) 231
CseI GACGC 1 cut(s) 449
Csp6I GTAC 2 cut(s) 313, 384
CviAII CATG 3 cut(s) 87, 121, 419
CviJI RGCY 8 cut(s) 21, 161, 208, 226, 233, 237, 328, 442
CviKI_1 RGCY 8 cut(s) 21, 161, 208, 226, 233, 237, 328, 442
CviQI GTAC 2 cut(s) 313, 384
DdeI CTNAG 1 cut(s) 281
DpnI GATC 3 cut(s) 85, 252, 379
DpnII GATC 3 cut(s) 83, 250, 377
EaeI YGGCCR 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 215
EarI CTCTTC 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 208
Eco105I TACGTA 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 54
EcoICRI GAGCTC 1 cut(s) 208
EcoRV GATATC 1 cut(s) 398
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 3 cut(s) 90, 124, 422
FaiI YATR 8 cut(s) 11, 88, 107, 122, 303, 311, 363, 420
FatI CATG 3 cut(s) 86, 120, 418
Fnu4HI GCNGC 2 cut(s) 22, 260
FokI GGATG 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 2 cut(s) 22, 260
FspBI CTAG 2 cut(s) 80, 444
GluI GCNGC 2 cut(s) 22, 260
HaeIII GGCC 3 cut(s) 233, 328, 442
HgaI GACGC 1 cut(s) 449
Hin1I GRCGYC 1 cut(s) 460
Hin1II CATG 3 cut(s) 90, 124, 422
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 3 cut(s) 186, 194, 286
HphI GGTGA 2 cut(s) 61, 104
Hpy188III TCNNGA 1 cut(s) 369
Hpy99I CGWCG 1 cut(s) 375
HpyCH4IV ACGT 2 cut(s) 178, 315
HpyCH4V TGCA 3 cut(s) 4, 266, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 142, 239
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 2 cut(s) 178, 315
Hsp92I GRCGYC 1 cut(s) 460
Hsp92II CATG 3 cut(s) 90, 124, 422
Kzo9I GATC 3 cut(s) 83, 250, 377
LguI GCTCTTC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 123, 247, 276, 289, 366
Lsp1109I GCAGC 2 cut(s) 8, 246
LweI GCATC 1 cut(s) 160
MaeI CTAG 2 cut(s) 80, 444
MaeII ACGT 2 cut(s) 178, 315
MaeIII GTNAC 1 cut(s) 49
MalI GATC 3 cut(s) 85, 252, 379
MboI GATC 3 cut(s) 83, 250, 377
MboII GAAGA 5 cut(s) 60, 202, 281, 387, 435
MflI RGATCY 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 210
MlsI TGGCCA 1 cut(s) 328
MluCI AATT 4 cut(s) 40, 99, 333, 339
MluNI TGGCCA 1 cut(s) 328
MlyI GAGTC 2 cut(s) 180, 203
MnlI CCTC 6 cut(s) 40, 150, 192, 376, 402, 407
Mox20I TGGCCA 1 cut(s) 328
MscI TGGCCA 1 cut(s) 328
MseI TTAA 3 cut(s) 39, 59, 332
Msp20I TGGCCA 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 30, 142, 239
NdeII GATC 3 cut(s) 83, 250, 377
NlaIII CATG 3 cut(s) 90, 124, 422
NmeAIII GCCGAG 1 cut(s) 418
NmuCI GTSAC 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 215
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 2 cut(s) 23, 261
PleI GAGTC 2 cut(s) 180, 202
PpsI GAGTC 2 cut(s) 180, 202
Ppu21I YACGTR 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 332
Psp124BI GAGCTC 1 cut(s) 210
PspPI GGNCC 1 cut(s) 231
PsuI RGATCY 1 cut(s) 250
RsaI GTAC 2 cut(s) 314, 385
RsaNI GTAC 2 cut(s) 313, 384
SacI GAGCTC 1 cut(s) 210
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 3 cut(s) 39, 59, 332
SatI GCNGC 2 cut(s) 22, 260
Sau3AI GATC 3 cut(s) 83, 250, 377
Sau96I GGNCC 1 cut(s) 231
SchI GAGTC 2 cut(s) 180, 203
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 1 cut(s) 160
SnaBI TACGTA 1 cut(s) 316
Sse9I AATT 4 cut(s) 40, 99, 333, 339
SsiI CCGC 1 cut(s) 143
SspMI CTAG 2 cut(s) 80, 444
SstI GAGCTC 1 cut(s) 210
TaiI ACGT 2 cut(s) 181, 318
TaqI TCGA 4 cut(s) 192, 197, 370, 394
TasI AATT 4 cut(s) 40, 99, 333, 339
TfiI GAWTC 1 cut(s) 286
Tru1I TTAA 3 cut(s) 39, 59, 332
Tru9I TTAA 3 cut(s) 39, 59, 332
TseFI GTSAC 1 cut(s) 49
TseI GCWGC 2 cut(s) 21, 259
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 111, 120, 202
Van91I CCANNNNNTGG 1 cut(s) 228
VspI ATTAAT 1 cut(s) 332
XspI CTAG 2 cut(s) 80, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.