Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Forward (+)

31923625 .. 31925466

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G339000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCAAAGGCAATTCCTGAGGTAATTCTGAGCTGCGGTGACGACATTCTAGCCATTCCAGTGATTGGCATGGGAACTGCATACCCTGCGCCGGATCCAGAAACAGACAAGGCTGCGGTTCTTGAAGCCATTAAAGCCGGCTACCGCCACTTTGACACCGCCTTAGTTTACGGGTCGGAGAAATATCTAGGTCAAGCCATATCCGATGCTGTGCGTCTTGGACTCATCAAGTCCAGGAGTGAGGTGTTCATCACCACCAAGCTTTTTGCCAGCTTTGCTGAGAAGGATCTTGTGGTGCCTGCCCTTAACATGAGTCTAAGGAATCTGCAACTGGAGTACGTGGATATGTACATAATTCATTGGCCCTTCAAATTTGGGGGAGAGGTGAAGAGTATGCCTGTTGCAAAAGAGATGGTGCTACCTCTAGATTTGAAGTCAGTTTGGGGAGGCATGGAAGAGTGCAAGAGACTTGGCCTTGCCAGGGGCATTGGCGTCAGTAATTTCACTTGCAACATGCTTCAGGACCTCCTTTCCATCGCCAAAATCCCTCCCGTCCTCAACCAATTGGAGATGAGCCCCGCTTGGCAGACAAAGAAACTGAATGACTTCTGTAAGGCAAAGGGTATCCATGTTACAGCTTACTCTCCCCTGGGCGGAGCTAACAGTCGAGTAGGAGACGACAGGGTTTTATGCTCAAACATCCTCGAAGACATTGCCAAAGCCAAAGGCAAAACAACTGCTCAGGTATCGTTGAGGTGGGTTTATGAGCAAGGGGTGAGCATGGTAACAAAAAGCAACAACAAGGAAAGAATGAAGCAGAACGTTGACATATTCGATTGGTCGTTGACTGACGAGGAATTGGAAAAGATTAGTCATTTTCCTCAGCGGAAAGCAGTTACCTTTGCCTCAATTGTTGGGCCGCATGATCTAATTGTCGACATTGACGCCCAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

319

Amino Acids

35.08

Weight (kDa)

6.25

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	295
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccI	GTMKAC	1 cut(s)	936
AciI	CCGC	8 cut(s)	36, 116, 145, 159, 579, 654, 886, 920
AclI	AACGTT	1 cut(s)	822
AclWI	GGATC	3 cut(s)	89, 102, 294
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	503
AcyI	GRCGYC	2 cut(s)	492, 945
AfaI	GTAC	2 cut(s)	338, 350
AfiI	CCNNNNNNNGG	4 cut(s)	65, 91, 481, 653
AgsI	TTSAA	3 cut(s)	125, 370, 433
AjnI	CCWGG	3 cut(s)	233, 479, 648
AluBI	AGCT	5 cut(s)	33, 262, 273, 638, 659
AluI	AGCT	5 cut(s)	33, 262, 273, 638, 659
Alw26I	GTCTC	2 cut(s)	460, 669
AlwI	GGATC	3 cut(s)	89, 102, 294
AoxI	GGCC	3 cut(s)	362, 472, 917
ApeKI	GCWGC	2 cut(s)	33, 113
ApoI	RAATTY	1 cut(s)	371
Asp700I	GAANNNNTTC	1 cut(s)	605
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	363, 523, 917
AsuHPI	GGTGA	4 cut(s)	50, 244, 397, 787
AvaII	GGWCC	1 cut(s)	523
AxyI	CCTNAGG	1 cut(s)	18
BamHI	GGATCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	714
BbvCI	CCTCAGC	1 cut(s)	882
BbvI	GCAGC	2 cut(s)	20, 100
BccI	CCATC	2 cut(s)	406, 542
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	3 cut(s)	235, 481, 650
BciVI	GTATCC	1 cut(s)	635
BcoDI	GTCTC	2 cut(s)	460, 669
BfaI	CTAG	3 cut(s)	50, 188, 425
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	3 cut(s)	34, 114, 920
BlsI	GCNGC	3 cut(s)	35, 115, 921
Bme1390I	CCNGG	3 cut(s)	235, 481, 650
Bme18I	GGWCC	1 cut(s)	523
BmgT120I	GGNCC	3 cut(s)	363, 523, 917
BmiI	GGNNCC	2 cut(s)	96, 297
BmrFI	CCNGG	3 cut(s)	235, 481, 650
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	714
BpmI	CTGGAG	1 cut(s)	353
Bpu10I	CCTNAGC	2 cut(s)	741, 882
BsaAI	YACGTR	1 cut(s)	340
BsaHI	GRCGYC	2 cut(s)	492, 945
BsaJI	CCNNGG	3 cut(s)	480, 648, 649
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 91, 481, 653
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	59, 336
Bse21I	CCTNAGG	1 cut(s)	18
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	3 cut(s)	235, 481, 650
BseDI	CCNNGG	3 cut(s)	480, 648, 649
BseGI	GGATG	1 cut(s)	699
BseLI	CCNNNNNNNGG	4 cut(s)	65, 91, 481, 653
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	5 cut(s)	9, 20, 270, 755, 896
BseNI	ACTGG	2 cut(s)	59, 336
BseXI	GCAGC	2 cut(s)	20, 100
BshFI	GGCC	3 cut(s)	364, 474, 919
BshNI	GGYRCC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	92, 138
BslI	CCNNNNNNNGG	4 cut(s)	65, 91, 481, 653
BsmAI	GTCTC	2 cut(s)	460, 669
BsmBI	CGTCTC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	364, 474, 919
Bsp1286I	GDGCHC	1 cut(s)	578
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	94, 286, 925
BspACI	CCGC	8 cut(s)	36, 116, 145, 159, 579, 654, 886, 920
BspANI	GGCC	3 cut(s)	364, 474, 919
BspCNI	CTCAG	5 cut(s)	10, 21, 271, 754, 895
BspLI	GGNNCC	2 cut(s)	96, 297
BspPI	GGATC	3 cut(s)	89, 102, 294
BspT107I	GGYRCC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	137
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	59, 336
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	480, 648, 649
BssMI	GATC	3 cut(s)	94, 286, 925
BssNI	GRCGYC	2 cut(s)	492, 945
Bst2UI	CCWGG	3 cut(s)	235, 481, 650
Bst4CI	ACNGT	2 cut(s)	665, 954
Bst6I	CTCTTC	2 cut(s)	383, 450
BstACI	GRCGYC	2 cut(s)	492, 945
BstAPI	GCANNNNNTGC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	3 cut(s)	139, 271, 300
BstDEI	CTNAG	7 cut(s)	18, 29, 163, 279, 317, 741, 882
BstF5I	GGATG	1 cut(s)	699
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	97, 289, 928
BstMAI	GTCTC	2 cut(s)	460, 669
BstMBI	GATC	3 cut(s)	94, 286, 925
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 134, 275
BstNI	CCWGG	3 cut(s)	235, 481, 650
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	3 cut(s)	233, 479, 648
BstV1I	GCAGC	2 cut(s)	20, 100
BstV2I	GAAGAC	1 cut(s)	714
BstX2I	RGATCY	2 cut(s)	94, 286
BstYI	RGATCY	2 cut(s)	94, 286
Bsu36I	CCTNAGG	1 cut(s)	18
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	364, 474, 919
BtgZI	GCGATG	1 cut(s)	520
BtsCI	GGATG	1 cut(s)	699
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	3 cut(s)	139, 271, 300
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	3 cut(s)	363, 523, 917
CseI	GACGC	2 cut(s)	203, 481
Csp6I	GTAC	2 cut(s)	337, 349
CviAII	CATG	7 cut(s)	70, 310, 451, 514, 629, 781, 923
CviQI	GTAC	2 cut(s)	337, 349
DdeI	CTNAG	7 cut(s)	18, 29, 163, 279, 317, 741, 882
DpnI	GATC	3 cut(s)	96, 288, 927
DpnII	GATC	3 cut(s)	94, 286, 925
Eam1104I	CTCTTC	2 cut(s)	383, 450
EarI	CTCTTC	2 cut(s)	383, 450
EciI	GGCGGA	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	523
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	3 cut(s)	233, 479, 648
EcoT38I	GRGCYC	1 cut(s)	578
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	7 cut(s)	73, 313, 454, 517, 632, 784, 926
FatI	CATG	7 cut(s)	69, 309, 450, 513, 628, 780, 922
FauI	CCCGC	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	936
Fnu4HI	GCNGC	3 cut(s)	34, 114, 920
FokI	GGATG	1 cut(s)	686
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	3 cut(s)	34, 114, 920
FspBI	CTAG	3 cut(s)	50, 188, 425
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	34, 114, 920
GsuI	CTGGAG	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	364, 474, 919
HapII	CCGG	2 cut(s)	92, 138
HgaI	GACGC	2 cut(s)	203, 481
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	2 cut(s)	492, 945
Hin1II	CATG	7 cut(s)	73, 313, 454, 517, 632, 784, 926
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HincII	GTYRAC	3 cut(s)	826, 846, 937
HindII	GTYRAC	3 cut(s)	826, 846, 937
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	3 cut(s)	222, 313, 322
HpaII	CCGG	2 cut(s)	92, 138
HphI	GGTGA	4 cut(s)	50, 244, 397, 787
Hpy166II	GTNNAC	4 cut(s)	169, 826, 846, 937
Hpy188I	TCNGA	3 cut(s)	30, 178, 205
Hpy188III	TCNNGA	5 cut(s)	17, 98, 122, 425, 521
Hpy8I	GTNNAC	4 cut(s)	169, 826, 846, 937
HpyAV	CCTTC	2 cut(s)	277, 376
HpyCH4III	ACNGT	2 cut(s)	665, 954
HpyCH4IV	ACGT	2 cut(s)	339, 822
HpyCH4V	TGCA	5 cut(s)	80, 328, 404, 462, 510
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 134, 275
HpyF3I	CTNAG	7 cut(s)	18, 29, 163, 279, 317, 741, 882
HpySE526I	ACGT	2 cut(s)	339, 822
Hsp92I	GRCGYC	2 cut(s)	492, 945
Hsp92II	CATG	7 cut(s)	73, 313, 454, 517, 632, 784, 926
HspAI	GCGC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	3 cut(s)	94, 286, 925
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	2 cut(s)	20, 100
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	50, 188, 425
MaeII	ACGT	2 cut(s)	339, 822
MaeIII	GTNAC	4 cut(s)	38, 631, 784, 895
MalI	GATC	3 cut(s)	96, 288, 927
MboI	GATC	3 cut(s)	94, 286, 925
MboII	GAAGA	3 cut(s)	400, 467, 719
MfeI	CAATTG	2 cut(s)	563, 909
MflI	RGATCY	2 cut(s)	94, 286
MhlI	GDGCHC	1 cut(s)	578
MluCI	AATT	9 cut(s)	12, 24, 354, 371, 499, 563, 857, 909, 930
MlyI	GAGTC	2 cut(s)	216, 322
MmeI	TCCRAC	1 cut(s)	156
MroNI	GCCGGC	1 cut(s)	137
MroXI	GAANNNNTTC	1 cut(s)	605
MseI	TTAA	2 cut(s)	132, 306
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	886
MspI	CCGG	2 cut(s)	92, 138
MspR9I	CCNGG	3 cut(s)	235, 481, 650
MunI	CAATTG	2 cut(s)	563, 909
MvaI	CCWGG	3 cut(s)	235, 481, 650
MwoI	GCNNNNNNNGC	3 cut(s)	86, 134, 275
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	3 cut(s)	94, 286, 925
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	7 cut(s)	73, 313, 454, 517, 632, 784, 926
NlaIV	GGNNCC	2 cut(s)	96, 297
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	517
PasI	CCCWGGG	1 cut(s)	649
PdiI	GCCGGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	605
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	35, 115, 921
PleI	GAGTC	2 cut(s)	216, 321
PpsI	GAGTC	2 cut(s)	216, 321
Ppu21I	YACGTR	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	523
Psp1406I	AACGTT	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	3 cut(s)	233, 479, 648
PspGI	CCWGG	3 cut(s)	233, 479, 648
PspN4I	GGNNCC	2 cut(s)	96, 297
PspPI	GGNCC	3 cut(s)	363, 523, 917
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	2 cut(s)	94, 286
RsaI	GTAC	2 cut(s)	338, 350
RsaNI	GTAC	2 cut(s)	337, 349
RseI	CAYNNNNRTG	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	935
SaqAI	TTAA	2 cut(s)	132, 306
SatI	GCNGC	3 cut(s)	34, 114, 920
Sau3AI	GATC	3 cut(s)	94, 286, 925
Sau96I	GGNCC	3 cut(s)	363, 523, 917
SchI	GAGTC	2 cut(s)	216, 322
ScrFI	CCNGG	3 cut(s)	235, 481, 650
SduI	GDGCHC	1 cut(s)	578
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	523
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	9 cut(s)	12, 24, 354, 371, 499, 563, 857, 909, 930
SsiI	CCGC	8 cut(s)	36, 116, 145, 159, 579, 654, 886, 920
SspMI	CTAG	3 cut(s)	50, 188, 425
StyD4I	CCNGG	3 cut(s)	233, 479, 648
TaaI	ACNGT	2 cut(s)	665, 954
TaiI	ACGT	2 cut(s)	342, 825
TaqI	TCGA	4 cut(s)	667, 705, 834, 936
TasI	AATT	9 cut(s)	12, 24, 354, 371, 499, 563, 857, 909, 930
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	922
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	132, 306
Tru9I	TTAA	2 cut(s)	132, 306
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	2 cut(s)	33, 113
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	238, 347, 827
TspRI	CASTG	1 cut(s)	66
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	523
XapI	RAATTY	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	424
XceI	RCATGY	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	936
XmnI	GAANNNNTTC	1 cut(s)	605
XspI	CTAG	3 cut(s)	50, 188, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.