Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8279203.1

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Forward (+)

79 .. 845

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8279203.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

atggcaaaggttccttcagtaaccctaagctcctccggtgatgagatcctgaccatgcctatcatcggcatgggaacttcatcgtaccctcgggccgacccagaaaccgccaaggctgccattctcgaagcgatcagagctggttaccgacattttgacaccgcctttgcctacgggtcggagcaagatctcggtgaagccatagccgaggctctccgtctcggactcatcaactctagggatgagctcttcatcacaaccaagctttgggctagtttcgccgagaaagaccttgtgctgccgtccatcaaagccagtttaaggaatcttcaactagagtacattgacatgtacatcatacattggcctttcaaattgggaaaagaggtgaaaagcatgcctgttgagagagagctggtgcagccccttgatctcaaatctgtttgggaagccatggaagagtgcaagaaacttggccttgctagaggtattggcgttagtaacttcacatgcagtatgctcgaggagcttctttccttcgccgaaatccctccggccgtcaaccaagtccgatta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

192

Amino Acids

21.29

Weight (kDa)

5.07

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AciI	CCGC	2 cut(s)	108, 162
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	555
AfaI	GTAC	3 cut(s)	86, 341, 353
AfiI	CCNNNNNNNGG	3 cut(s)	65, 267, 321
AflIII	ACRYGT	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	332, 373
AluBI	AGCT	6 cut(s)	30, 140, 247, 265, 415, 529
AluI	AGCT	6 cut(s)	30, 140, 247, 265, 415, 529
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	2 cut(s)	90, 521
AoxI	GGCC	4 cut(s)	93, 365, 475, 555
ApeKI	GCWGC	3 cut(s)	116, 298, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	50, 206, 400
AvaI	CYCGRG	2 cut(s)	90, 521
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	3 cut(s)	103, 285, 433
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	2 cut(s)	286, 542
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	4 cut(s)	237, 273, 335, 483
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	3 cut(s)	117, 299, 422
BlsI	GCNGC	3 cut(s)	118, 300, 423
BmeT110I	CYCGRG	2 cut(s)	90, 521
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	26
BsaJI	CCNNGG	4 cut(s)	89, 111, 207, 453
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 267, 321
Bse1I	ACTGG	1 cut(s)	315
BseDI	CCNNGG	4 cut(s)	89, 111, 207, 453
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	65, 267, 321
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	2 cut(s)	22, 539
BseX3I	CGGCCG	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	103, 285, 433
BsgI	GTGCAG	1 cut(s)	440
Bsh1285I	CGRYCG	1 cut(s)	558
BshFI	GGCC	4 cut(s)	95, 367, 477, 557
BsiEI	CGRYCG	1 cut(s)	558
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	2 cut(s)	90, 521
BsiSI	CCGG	2 cut(s)	36, 554
BslI	CCNNNNNNNGG	3 cut(s)	65, 267, 321
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	4 cut(s)	95, 367, 477, 557
BsoBI	CYCGRG	2 cut(s)	90, 521
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	45, 132, 187, 430
Bsp19I	CCATGG	1 cut(s)	453
BspACI	CCGC	2 cut(s)	108, 162
BspANI	GGCC	4 cut(s)	95, 367, 477, 557
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	40
BspQI	GCTCTTC	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	4 cut(s)	89, 111, 207, 453
BssMI	GATC	4 cut(s)	45, 132, 187, 430
BssT1I	CCWWGG	2 cut(s)	111, 453
Bst6I	CTCTTC	2 cut(s)	254, 453
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	453
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	4 cut(s)	48, 135, 190, 433
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	45, 132, 187, 430
BstMCI	CGRYCG	1 cut(s)	558
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 137, 278, 421, 526
BstNSI	RCATGY	3 cut(s)	352, 400, 513
BstPI	GGTNACC	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	103, 285, 433
BstX2I	RGATCY	2 cut(s)	45, 187
BstYI	RGATCY	2 cut(s)	45, 187
BstZI	CGGCCG	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	95, 367, 477, 557
BtgI	CCRYGG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	3 cut(s)	85, 340, 352
CviAII	CATG	6 cut(s)	55, 70, 349, 397, 454, 510
CviQI	GTAC	3 cut(s)	85, 340, 352
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	4 cut(s)	47, 134, 189, 432
DpnII	GATC	4 cut(s)	45, 132, 187, 430
EaeI	YGGCCR	1 cut(s)	555
EagI	CGGCCG	1 cut(s)	555
Eam1104I	CTCTTC	2 cut(s)	254, 453
EarI	CTCTTC	2 cut(s)	254, 453
Ecl136II	GAGCTC	1 cut(s)	247
EclXI	CGGCCG	1 cut(s)	555
Eco130I	CCWWGG	2 cut(s)	111, 453
Eco24I	GRGCYC	1 cut(s)	249
Eco52I	CGGCCG	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	2 cut(s)	90, 521
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	143
EcoT14I	CCWWGG	2 cut(s)	111, 453
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	111, 453
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	6 cut(s)	58, 73, 352, 400, 457, 513
FaiI	YATR	9 cut(s)	56, 71, 203, 350, 359, 398, 455, 511, 518
FatI	CATG	6 cut(s)	54, 69, 348, 396, 453, 509
Fnu4HI	GCNGC	3 cut(s)	117, 299, 422
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	3 cut(s)	117, 299, 422
FspBI	CTAG	4 cut(s)	237, 273, 335, 483
GluI	GCNGC	3 cut(s)	117, 299, 422
HaeIII	GGCC	4 cut(s)	95, 367, 477, 557
HapII	CCGG	2 cut(s)	36, 554
Hin1II	CATG	6 cut(s)	58, 73, 352, 400, 457, 513
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	225, 325
HpaII	CCGG	2 cut(s)	36, 554
HphI	GGTGA	3 cut(s)	50, 206, 400
Hpy166II	GTNNAC	1 cut(s)	562
Hpy188I	TCNGA	4 cut(s)	137, 181, 224, 572
Hpy188III	TCNNGA	2 cut(s)	49, 125
Hpy8I	GTNNAC	1 cut(s)	562
HpyAV	CCTTC	2 cut(s)	24, 547
HpyCH4V	TGCA	3 cut(s)	421, 465, 513
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 137, 278, 421, 526
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	6 cut(s)	58, 73, 352, 400, 457, 513
Kzo9I	GATC	4 cut(s)	45, 132, 187, 430
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	3 cut(s)	35, 181, 526
LpnPI	CCDG	8 cut(s)	49, 62, 114, 126, 328, 401, 414, 567
Lsp1109I	GCAGC	3 cut(s)	103, 285, 433
MaeI	CTAG	4 cut(s)	237, 273, 335, 483
MaeIII	GTNAC	3 cut(s)	19, 143, 500
MalI	GATC	4 cut(s)	47, 134, 189, 432
MboI	GATC	4 cut(s)	45, 132, 187, 430
MboII	GAAGA	3 cut(s)	241, 320, 470
MflI	RGATCY	2 cut(s)	45, 187
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	43, 99, 202, 379, 479, 517, 561
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	2 cut(s)	68, 347
MspI	CCGG	2 cut(s)	36, 554
MwoI	GCNNNNNNNGC	5 cut(s)	116, 137, 278, 421, 526
NcoI	CCATGG	1 cut(s)	453
NdeII	GATC	4 cut(s)	45, 132, 187, 430
NlaIII	CATG	6 cut(s)	58, 73, 352, 400, 457, 513
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	2 cut(s)	232, 307
NspI	RCATGY	3 cut(s)	352, 400, 513
PaeI	GCATGC	1 cut(s)	400
PaeR7I	CTCGAG	1 cut(s)	521
PciI	ACATGT	1 cut(s)	348
PciSI	GCTCTTC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	325
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	118, 300, 423
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	348
Psp124BI	GAGCTC	1 cut(s)	249
PspEI	GGTNACC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	93
PspXI	VCTCGAGB	1 cut(s)	521
PsuI	RGATCY	2 cut(s)	45, 187
RsaI	GTAC	3 cut(s)	86, 341, 353
RsaNI	GTAC	3 cut(s)	85, 340, 352
RseI	CAYNNNNRTG	2 cut(s)	68, 347
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	3 cut(s)	117, 299, 422
Sau3AI	GATC	4 cut(s)	45, 132, 187, 430
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	521
SlaI	CTCGAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	2 cut(s)	68, 347
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SphI	GCATGC	1 cut(s)	400
Sse9I	AATT	1 cut(s)	374
SsiI	CCGC	2 cut(s)	108, 162
SspMI	CTAG	4 cut(s)	237, 273, 335, 483
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	2 cut(s)	111, 453
TaqI	TCGA	2 cut(s)	126, 522
TasI	AATT	1 cut(s)	374
TatI	WGTACW	2 cut(s)	339, 351
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseI	GCWGC	3 cut(s)	116, 298, 421
TspDTI	ATGAA	2 cut(s)	69, 241
TspGWI	ACGGA	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	267
XceI	RCATGY	3 cut(s)	352, 400, 513
XhoI	CTCGAG	1 cut(s)	521
XspI	CTAG	4 cut(s)	237, 273, 335, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.