Rh7AG400500

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003272
Physical Location & Seq
Forward (+)
52693638 .. 52696402
2765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG400500.1

Sequence Viewer

Length: 531 bp
ATGGCACCATTAAAGGTTTCTTCAGTAAAACTAGGATCATGTGGTGATGAAACTACTATGCCAGTAATAGGCATGGGAACTTCATCGCACCCTCCGGTGGACCGTCAAACGGCCAAGGCTGCCATTCTTGAAGCAATCAAAGTGGGTTACCGCCACTTTGACACCGCCTATGCTTATGGTAATTCAGAGCAACATTTGGGGGAAGCTATTGCTGATGCTCTACGTCTTGGACTCATCGAGTCGAGGGATGAGCTCTTCATCACAACCAAGCTTTGGGCCAGCTTTGCTGAAAGAGATCTTGTGCTGCCTGCAATCAACACCAGCTTAAGGAAGAAACAAGGACCAATTCACCACAAAGATCCAGCTAACCCGCTATTCACACTTGATAGACTTGTAAATGTGACAAACAAAGAGCAAAGCAGCACGAAATCCAACAGTGCCAAGCATAAGAAAGAAACCATAGCAAATGCAAGCCATGTAACCAAAGAAGAACGATGTCTGCATAAACCAGACATGTCTGATCTAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

176

Amino Acids

19.29

Weight (kDa)

8.51

Isoelectric Point (pI)

43.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 111 3e-15 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 273
AciI CCGC 3 cut(s) 151, 165, 371
AclWI GGATC 2 cut(s) 43, 353
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 6
AfiI CCNNNNNNNGG 5 cut(s) 68, 97, 109, 273, 327
AflII CTTAAG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 6 cut(s) 206, 253, 271, 282, 324, 365
AluI AGCT 6 cut(s) 206, 253, 271, 282, 324, 365
Alw21I GWGCWC 1 cut(s) 255
AlwI GGATC 2 cut(s) 43, 353
AoxI GGCC 2 cut(s) 111, 276
ApeKI GCWGC 3 cut(s) 119, 304, 420
AspS9I GGNCC 3 cut(s) 100, 276, 341
AsuHPI GGTGA 2 cut(s) 56, 341
AvaII GGWCC 2 cut(s) 100, 341
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 106, 291, 432
BceAI ACGGC 1 cut(s) 126
BfaI CTAG 2 cut(s) 32, 524
BfrI CTTAAG 1 cut(s) 325
BglII AGATCT 1 cut(s) 295
BisI GCNGC 3 cut(s) 120, 305, 421
BlsI GCNGC 3 cut(s) 121, 306, 422
Bme18I GGWCC 2 cut(s) 100, 341
BmgT120I GGNCC 3 cut(s) 100, 276, 341
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 205
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 97, 109, 273, 327
Bse1I ACTGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 5 cut(s) 68, 97, 109, 273, 327
BseNI ACTGG 1 cut(s) 62
BseXI GCAGC 3 cut(s) 106, 291, 432
BshFI GGCC 2 cut(s) 113, 278
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 5 cut(s) 68, 97, 109, 273, 327
BsnI GGCC 2 cut(s) 113, 278
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 4 cut(s) 35, 295, 358, 520
BspACI CCGC 3 cut(s) 151, 165, 371
BspANI GGCC 2 cut(s) 113, 278
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 43, 353
BspQI GCTCTTC 1 cut(s) 260
BspT107I GGYRCC 1 cut(s) 4
BspTI CTTAAG 1 cut(s) 325
BsrI ACTGG 1 cut(s) 62
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 35, 295, 358, 520
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 104, 437
Bst6I CTCTTC 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 325
BstC8I GCNNGC 3 cut(s) 280, 309, 472
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 4 cut(s) 38, 298, 361, 523
BstMBI GATC 4 cut(s) 35, 295, 358, 520
BstMWI GCNNNNNNNGC 2 cut(s) 119, 284
BstNSI RCATGY 1 cut(s) 517
BstPI GGTNACC 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 106, 291, 432
BstX2I RGATCY 2 cut(s) 295, 358
BstYI RGATCY 2 cut(s) 295, 358
BsuRI GGCC 2 cut(s) 113, 278
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 3 cut(s) 280, 309, 472
Cfr13I GGNCC 3 cut(s) 100, 276, 341
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 4 cut(s) 39, 73, 476, 514
DpnI GATC 4 cut(s) 37, 297, 360, 522
DpnII GATC 4 cut(s) 35, 295, 358, 520
EaeI YGGCCR 1 cut(s) 111
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 100, 341
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 6
Eco91I GGTNACC 1 cut(s) 146
EcoICRI GAGCTC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 146
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 4 cut(s) 42, 76, 479, 517
FatI CATG 4 cut(s) 38, 72, 475, 513
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 3 cut(s) 120, 305, 421
FokI GGATG 1 cut(s) 260
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 120, 305, 421
FspBI CTAG 2 cut(s) 32, 524
GluI GCNGC 3 cut(s) 120, 305, 421
HaeIII GGCC 2 cut(s) 113, 278
HapII CCGG 1 cut(s) 95
Hin1II CATG 4 cut(s) 42, 76, 479, 517
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 231, 239
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 56, 341
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 187, 520
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 100
HpyCH4III ACNGT 2 cut(s) 104, 437
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 311, 470, 502
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 284
HpySE526I ACGT 1 cut(s) 223
Hsp92II CATG 4 cut(s) 42, 76, 479, 517
Kzo9I GATC 4 cut(s) 35, 295, 358, 520
LguI GCTCTTC 1 cut(s) 260
LpnPI CCDG 7 cut(s) 75, 108, 292, 321, 334, 375, 522
Lsp1109I GCAGC 3 cut(s) 106, 291, 432
LweI GCATC 1 cut(s) 205
MaeI CTAG 2 cut(s) 32, 524
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 3 cut(s) 146, 400, 478
MalI GATC 4 cut(s) 37, 297, 360, 522
MboI GATC 4 cut(s) 35, 295, 358, 520
MboII GAAGA 4 cut(s) 12, 247, 343, 500
MflI RGATCY 2 cut(s) 295, 358
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 181, 345
MlyI GAGTC 2 cut(s) 225, 248
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 2 cut(s) 102, 237
MseI TTAA 2 cut(s) 11, 326
MspCI CTTAAG 1 cut(s) 325
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 119, 284
NdeII GATC 4 cut(s) 35, 295, 358, 520
NlaIII CATG 4 cut(s) 42, 76, 479, 517
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 400
NspI RCATGY 1 cut(s) 517
PciI ACATGT 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 273
PkrI GCNGC 3 cut(s) 121, 306, 422
PleI GAGTC 2 cut(s) 225, 247
PpsI GAGTC 2 cut(s) 225, 247
PscI ACATGT 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 255
PspEI GGTNACC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 100, 276, 341
PsuI RGATCY 2 cut(s) 295, 358
SacI GAGCTC 1 cut(s) 255
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 11, 326
SatI GCNGC 3 cut(s) 120, 305, 421
Sau3AI GATC 4 cut(s) 35, 295, 358, 520
Sau96I GGNCC 3 cut(s) 100, 276, 341
SchI GAGTC 2 cut(s) 225, 248
SduI GDGCHC 1 cut(s) 255
SetI ASST 8 cut(s) 18, 208, 226, 255, 273, 284, 326, 367
SfaNI GCATC 1 cut(s) 205
SinI GGWCC 2 cut(s) 100, 341
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 2 cut(s) 181, 345
SsiI CCGC 3 cut(s) 151, 165, 371
SspMI CTAG 2 cut(s) 32, 524
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 104, 437
TaiI ACGT 1 cut(s) 226
TaqI TCGA 2 cut(s) 237, 242
TasI AATT 2 cut(s) 181, 345
Tru1I TTAA 2 cut(s) 11, 326
Tru9I TTAA 2 cut(s) 11, 326
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 400
TseI GCWGC 3 cut(s) 119, 304, 420
Tsp45I GTSAC 1 cut(s) 400
TspDTI ATGAA 3 cut(s) 63, 72, 247
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 273
Vha464I CTTAAG 1 cut(s) 325
VpaK11BI GGWCC 2 cut(s) 100, 341
XceI RCATGY 1 cut(s) 517
XspI CTAG 2 cut(s) 32, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.