Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8260649.1

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Forward (+)

139 .. 632

Gene Structure 494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8260649.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgacgggtatgcctctcgacgaagatcaggtacaacccctcgatatcaaatctgtttgggagggcatggaagaatgcaagaaactcggccttgcgaggggcattggcgtcagtaatttcacctccaagatgctcgaggagctcctctccatcgccaaaatccctcctgccgtcaatcatgtggagatgagcccagcttggcaggtgaagaaactgagggagttttgcgaggcaaaaaggatacatgtcacagcttactctccactgggtgcatctgggacttcatggggagacgatagggttttaggctcacaagtcctccaacagattgccaaagcaaaagggaaaacaactgctcaggtgggtacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

123

Amino Acids

13.4

Weight (kDa)

7.77

Isoelectric Point (pI)

39.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	108
AdeI	CACNNNGTG	1 cut(s)	269
AfaI	GTAC	2 cut(s)	33, 367
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	244
AluBI	AGCT	3 cut(s)	142, 197, 254
AluI	AGCT	3 cut(s)	142, 197, 254
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	285
Ama87I	CYCGRG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	88
AsuHPI	GGTGA	2 cut(s)	112, 217
AvaI	CYCGRG	1 cut(s)	134
BanII	GRGCYC	2 cut(s)	144, 194
BarI	GAAGNNNNNNTAC	2 cut(s)	15, 47
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	67, 101
BciVI	GTATCC	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	234
BmeT110I	CYCGRG	1 cut(s)	134
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	120, 281
BmuI	ACTGGG	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	131, 163
Bpu10I	CCTNAGC	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse1I	ACTGG	1 cut(s)	270
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	2 cut(s)	206, 371
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	134, 152
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	1 cut(s)	90
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	285
BsmBI	CGTCTC	1 cut(s)	285
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	90
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	144, 194
Bsp143I	GATC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	207, 370
BspMI	ACCTGC	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	270
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	215, 357
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	285
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	248
BsuI	GTATCC	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	193
CseI	GACGC	1 cut(s)	97
Csp6I	GTAC	2 cut(s)	32, 366
CviAII	CATG	4 cut(s)	67, 179, 245, 285
CviJI	RGCY	6 cut(s)	90, 142, 192, 197, 254, 309
CviKI_1	RGCY	6 cut(s)	90, 142, 192, 197, 254, 309
CviQI	GTAC	2 cut(s)	32, 366
DdeI	CTNAG	2 cut(s)	215, 357
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DraIII	CACNNNGTG	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	144, 194
Eco32I	GATATC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	46
EcoT38I	GRGCYC	2 cut(s)	144, 194
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	4 cut(s)	70, 182, 248, 288
FaiI	YATR	6 cut(s)	11, 68, 180, 246, 286, 370
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	66, 178, 244, 284
FriOI	GRGCYC	2 cut(s)	144, 194
GsaI	CCCAGC	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	90
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	4 cut(s)	70, 182, 248, 288
HphI	GGTGA	2 cut(s)	112, 217
Hpy188III	TCNNGA	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	23
HpyCH4V	TGCA	2 cut(s)	78, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	215, 357
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	4 cut(s)	70, 182, 248, 288
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	139, 147
LpnPI	CCDG	7 cut(s)	14, 180, 188, 207, 251, 261, 344
LweI	GCATC	2 cut(s)	120, 281
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	3 cut(s)	35, 83, 220
MhlI	GDGCHC	2 cut(s)	144, 194
MluCI	AATT	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	346
Mva1269I	GAATGC	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	4 cut(s)	70, 182, 248, 288
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	247
NspI	RCATGY	1 cut(s)	248
PaeR7I	CTCGAG	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	193
PciI	ACATGT	1 cut(s)	244
PctI	GAATGC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	244
Psp124BI	GAGCTC	1 cut(s)	144
PspFI	CCCAGC	1 cut(s)	193
PspXI	VCTCGAGB	1 cut(s)	134
RsaI	GTAC	2 cut(s)	33, 367
RsaNI	GTAC	2 cut(s)	32, 366
SacI	GAGCTC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	144, 194
SetI	ASST	7 cut(s)	33, 125, 144, 199, 207, 256, 363
SfaNI	GCATC	2 cut(s)	120, 281
Sfr274I	CTCGAG	1 cut(s)	134
SlaI	CTCGAG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	115
SstI	GAGCTC	1 cut(s)	144
TaqI	TCGA	3 cut(s)	18, 42, 135
TasI	AATT	1 cut(s)	115
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	270
XceI	RCATGY	1 cut(s)	248
XhoI	CTCGAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.