Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Reverse (-)

813480 .. 815377

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACGCCAACGATAGTTCCTGAGGTAACACTGATCTCCTGTGACATGACGATGCCAGTGATTGGCATGGGGACTTCACCGTACCCTAAAGTCGAGCCTGAAACAGCCATAGCTGCAATTCTTGAAGCAATCAGAGCGGGCTACCGCCACTTCGATACTGCCTTTGTTTACGGGTCAGAGCTAGATCTGGGGGGAGCCATAGCTGAAGCACTGCGTCTTGGACTTGTCAAGTCCAGGAGTGAGCTCTTCATCACCACCAAGCTTTATGCCAGCTTTGCTGAAAGGGACCTTGTAGTGCCTGCCATCAACATGAGTTTAAGGAATCTGCAATTGGAGTATGTGGATATGTACATAATACATTGGCCCTTCAAACTGGGGAAAGTGGTGAGCTCTATGCCAGTAGAAAAGGGAATGCTGCTACCCTTAGATATCAAGTCAGTTTGGGAAGGCATGGAAGAATGCAAGAGACTGGGCCTTGCGAGGGGCATTGGCGTCAGTAACTTCACTTCCGAGATGCTTGAGGACCTCCTTTCCATCGCCAAATTCCCTCCCGCCCTCAACCAATTGGAGATGAACCCACTTTGGCAGCTGAAGGAACTGAGGGAGTTCTGTAAGGCAAAGGGCATTCATGTGACGGCCTACTCTCCGTTAGGGTCAACCGCGTCTAGATTTGGAGACAACAAAGTCTTAGGCTCAAAAGTCCTCCAGGACATTGCCAAAGCCAAAGGAAAAACAACTGCTCAGATAGCGTTGAGATGGGTGTACCAGCAGGGGGTGAGCTTGGTAACAAAGAGTACCAACAAGGAAAGAATGAATCAGAACCTTGACATTTTCAGTTGGTCCTTGACTGAGGAGGAATTAGACAAGATTAGTCGTCTTCCTCAACACAAAACAATCACCTTCGCCTCAATTATGGGACCGCATGATGTTGTGCTCCGGATTGATGCTGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

319

Amino Acids

35.32

Weight (kDa)

6.97

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	683
AccB7I	CCANNNNNTGG	1 cut(s)	62
AccBSI	CCGCTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	662
AccIII	TCCGGA	1 cut(s)	936
AciI	CCGC	5 cut(s)	137, 145, 552, 660, 920
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	2 cut(s)	225, 611
AcyI	GRCGYC	2 cut(s)	5, 492
AfaI	GTAC	4 cut(s)	83, 350, 764, 796
AfiI	CCNNNNNNNGG	3 cut(s)	62, 481, 772
AgsI	TTSAA	2 cut(s)	125, 370
AjnI	CCWGG	2 cut(s)	233, 705
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	9 cut(s)	113, 181, 203, 244, 262, 273, 390, 589, 780
AluI	AGCT	9 cut(s)	113, 181, 203, 244, 262, 273, 390, 589, 780
Alw21I	GWGCWC	3 cut(s)	246, 392, 936
Alw26I	GTCTC	2 cut(s)	460, 669
Aor13HI	TCCGGA	1 cut(s)	936
AoxI	GGCC	3 cut(s)	362, 472, 636
ApeKI	GCWGC	3 cut(s)	113, 415, 586
ApoI	RAATTY	1 cut(s)	542
AspS9I	GGNCC	6 cut(s)	286, 363, 472, 523, 840, 917
AsuHPI	GGTGA	5 cut(s)	69, 244, 397, 787, 889
AvaII	GGWCC	4 cut(s)	286, 523, 840, 917
AxyI	CCTNAGG	1 cut(s)	21
BanII	GRGCYC	2 cut(s)	246, 392
BarI	GAAGNNNNNNTAC	2 cut(s)	490, 522
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	3 cut(s)	246, 392, 936
BbvI	GCAGC	3 cut(s)	100, 402, 598
BccI	CCATC	3 cut(s)	311, 542, 750
BceAI	ACGGC	1 cut(s)	651
BciT130I	CCWGG	2 cut(s)	235, 707
BcoDI	GTCTC	2 cut(s)	460, 669
BfaI	CTAG	2 cut(s)	182, 666
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	3 cut(s)	114, 416, 587
BlsI	GCNGC	3 cut(s)	115, 417, 588
Bme1390I	CCNGG	2 cut(s)	235, 707
Bme18I	GGWCC	4 cut(s)	286, 523, 840, 917
BmgT120I	GGNCC	6 cut(s)	286, 363, 472, 523, 840, 917
BmiI	GGNNCC	3 cut(s)	196, 287, 918
BmrFI	CCNGG	2 cut(s)	235, 707
BmrI	ACTGGG	2 cut(s)	383, 479
BmsI	GCATC	3 cut(s)	42, 504, 934
BmuI	ACTGGG	2 cut(s)	383, 479
BpiI	GAAGAC	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	689
BpuEI	CTTGAG	1 cut(s)	539
BsaHI	GRCGYC	2 cut(s)	5, 492
BsaWI	WCCGGW	1 cut(s)	936
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 481, 772
Bse1I	ACTGG	4 cut(s)	56, 378, 398, 474
Bse21I	CCTNAGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	711
BseAI	TCCGGA	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	235, 707
BseLI	CCNNNNNNNGG	3 cut(s)	62, 481, 772
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	4 cut(s)	12, 590, 755, 840
BseNI	ACTGG	4 cut(s)	56, 378, 398, 474
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	3 cut(s)	100, 402, 598
Bsh1236I	CGCG	1 cut(s)	662
BshFI	GGCC	3 cut(s)	364, 474, 638
BsiHKAI	GWGCWC	3 cut(s)	246, 392, 936
BsiSI	CCGG	1 cut(s)	937
BslFI	GGGAC	3 cut(s)	85, 299, 930
BslI	CCNNNNNNNGG	3 cut(s)	62, 481, 772
BsmAI	GTCTC	2 cut(s)	460, 669
BsmFI	GGGAC	3 cut(s)	85, 299, 930
BsmI	GAATGC	3 cut(s)	417, 464, 624
BsnI	GGCC	3 cut(s)	364, 474, 638
Bsp1286I	GDGCHC	3 cut(s)	246, 392, 936
Bsp13I	TCCGGA	1 cut(s)	936
Bsp1407I	TGTACA	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	33, 184
BspACI	CCGC	5 cut(s)	137, 145, 552, 660, 920
BspANI	GGCC	3 cut(s)	364, 474, 638
BspCNI	CTCAG	4 cut(s)	13, 591, 754, 841
BspEI	TCCGGA	1 cut(s)	936
BspFNI	CGCG	1 cut(s)	662
BspLI	GGNNCC	3 cut(s)	196, 287, 918
BspQI	GCTCTTC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	348
BsrI	ACTGG	4 cut(s)	56, 378, 398, 474
BssMI	GATC	2 cut(s)	33, 184
BssNI	GRCGYC	2 cut(s)	5, 492
Bst2UI	CCWGG	2 cut(s)	235, 707
Bst4CI	ACNGT	1 cut(s)	81
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	2 cut(s)	5, 492
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	3 cut(s)	139, 271, 300
BstDEI	CTNAG	6 cut(s)	21, 424, 599, 688, 741, 849
BstFNI	CGCG	1 cut(s)	662
BstKTI	GATC	2 cut(s)	36, 187
BstMAI	GTCTC	2 cut(s)	460, 669
BstMBI	GATC	2 cut(s)	33, 184
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 134, 275, 746
BstNI	CCWGG	2 cut(s)	235, 707
BstSCI	CCNGG	2 cut(s)	233, 705
BstUI	CGCG	1 cut(s)	662
BstV1I	GCAGC	3 cut(s)	100, 402, 598
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	364, 474, 638
BtgZI	GCGATG	1 cut(s)	520
BtsI	GCAGTG	1 cut(s)	209
BtsIMutI	CAGTG	3 cut(s)	29, 63, 209
Cac8I	GCNNGC	3 cut(s)	139, 271, 300
Cfr13I	GGNCC	6 cut(s)	286, 363, 472, 523, 840, 917
CseI	GACGC	4 cut(s)	13, 203, 481, 651
Csp6I	GTAC	4 cut(s)	82, 349, 763, 795
CviAII	CATG	6 cut(s)	46, 67, 310, 451, 629, 923
CviQI	GTAC	4 cut(s)	82, 349, 763, 795
DdeI	CTNAG	6 cut(s)	21, 424, 599, 688, 741, 849
DpnI	GATC	2 cut(s)	35, 186
DpnII	GATC	2 cut(s)	33, 184
DrdI	GACNNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	683
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Ecl136II	GAGCTC	2 cut(s)	244, 390
Eco24I	GRGCYC	2 cut(s)	246, 392
Eco32I	GATATC	1 cut(s)	430
Eco47I	GGWCC	4 cut(s)	286, 523, 840, 917
Eco53kI	GAGCTC	2 cut(s)	244, 390
Eco57I	CTGAAG	2 cut(s)	225, 611
Eco81I	CCTNAGG	1 cut(s)	21
EcoICRI	GAGCTC	2 cut(s)	244, 390
EcoO109I	RGGNCCY	2 cut(s)	286, 523
EcoRII	CCWGG	2 cut(s)	233, 705
EcoRV	GATATC	1 cut(s)	430
EcoT38I	GRGCYC	2 cut(s)	246, 392
FaeI	CATG	6 cut(s)	49, 70, 313, 454, 632, 926
FaqI	GGGAC	3 cut(s)	85, 299, 930
FatI	CATG	6 cut(s)	45, 66, 309, 450, 628, 922
FauI	CCCGC	2 cut(s)	130, 559
Fnu4HI	GCNGC	3 cut(s)	114, 416, 587
FriOI	GRGCYC	2 cut(s)	246, 392
Fsp4HI	GCNGC	3 cut(s)	114, 416, 587
FspBI	CTAG	2 cut(s)	182, 666
GluI	GCNGC	3 cut(s)	114, 416, 587
GsuI	CTGGAG	1 cut(s)	689
HaeIII	GGCC	3 cut(s)	364, 474, 638
HapII	CCGG	1 cut(s)	937
HgaI	GACGC	4 cut(s)	13, 203, 481, 651
Hin1I	GRCGYC	2 cut(s)	5, 492
Hin1II	CATG	6 cut(s)	49, 70, 313, 454, 632, 926
HincII	GTYRAC	1 cut(s)	657
HindII	GTYRAC	1 cut(s)	657
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	322, 814
HpaII	CCGG	1 cut(s)	937
HphI	GGTGA	5 cut(s)	69, 244, 397, 787, 889
Hpy166II	GTNNAC	3 cut(s)	169, 657, 763
Hpy188I	TCNGA	5 cut(s)	134, 178, 511, 744, 819
Hpy188III	TCNNGA	4 cut(s)	20, 122, 666, 937
Hpy8I	GTNNAC	3 cut(s)	169, 657, 763
HpyAV	CCTTC	4 cut(s)	376, 440, 586, 910
HpyCH4III	ACNGT	1 cut(s)	81
HpyCH4V	TGCA	3 cut(s)	116, 328, 462
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 134, 275, 746
HpyF3I	CTNAG	6 cut(s)	21, 424, 599, 688, 741, 849
Hsp92I	GRCGYC	2 cut(s)	5, 492
Hsp92II	CATG	6 cut(s)	49, 70, 313, 454, 632, 926
Kpn2I	TCCGGA	1 cut(s)	936
Kzo9I	GATC	2 cut(s)	33, 184
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	194, 939
Lsp1109I	GCAGC	3 cut(s)	100, 402, 598
LweI	GCATC	3 cut(s)	42, 504, 934
MaeI	CTAG	2 cut(s)	182, 666
MaeIII	GTNAC	5 cut(s)	25, 41, 497, 631, 784
MalI	GATC	2 cut(s)	35, 186
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	33, 184
MboII	GAAGA	3 cut(s)	238, 467, 869
MfeI	CAATTG	2 cut(s)	329, 563
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	3 cut(s)	246, 392, 936
MluCI	AATT	6 cut(s)	117, 329, 542, 563, 857, 909
MroI	TCCGGA	1 cut(s)	936
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	3 cut(s)	50, 308, 629
MspA1I	CMGCKG	1 cut(s)	589
MspI	CCGG	1 cut(s)	937
MspR9I	CCNGG	2 cut(s)	235, 707
MunI	CAATTG	2 cut(s)	329, 563
Mva1269I	GAATGC	3 cut(s)	417, 464, 624
MvaI	CCWGG	2 cut(s)	235, 707
MvnI	CGCG	1 cut(s)	662
MwoI	GCNNNNNNNGC	4 cut(s)	113, 134, 275, 746
NdeII	GATC	2 cut(s)	33, 184
NlaIII	CATG	6 cut(s)	49, 70, 313, 454, 632, 926
NlaIV	GGNNCC	3 cut(s)	196, 287, 918
NmuCI	GTSAC	2 cut(s)	41, 631
PciSI	GCTCTTC	1 cut(s)	251
PctI	GAATGC	3 cut(s)	417, 464, 624
PfeI	GAWTC	2 cut(s)	322, 814
PflMI	CCANNNNNTGG	1 cut(s)	62
PfoI	TCCNGGA	2 cut(s)	233, 705
PkrI	GCNGC	3 cut(s)	115, 417, 588
PpuMI	RGGWCCY	2 cut(s)	286, 523
Psp124BI	GAGCTC	2 cut(s)	246, 392
Psp5II	RGGWCCY	2 cut(s)	286, 523
Psp6I	CCWGG	2 cut(s)	233, 705
PspGI	CCWGG	2 cut(s)	233, 705
PspN4I	GGNNCC	3 cut(s)	196, 287, 918
PspPI	GGNCC	6 cut(s)	286, 363, 472, 523, 840, 917
PspPPI	RGGWCCY	2 cut(s)	286, 523
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	4 cut(s)	83, 350, 764, 796
RsaNI	GTAC	4 cut(s)	82, 349, 763, 795
RseI	CAYNNNNRTG	3 cut(s)	50, 308, 629
SacI	GAGCTC	2 cut(s)	246, 392
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	3 cut(s)	114, 416, 587
Sau3AI	GATC	2 cut(s)	33, 184
Sau96I	GGNCC	6 cut(s)	286, 363, 472, 523, 840, 917
ScrFI	CCNGG	2 cut(s)	235, 707
SduI	GDGCHC	3 cut(s)	246, 392, 936
SfaNI	GCATC	3 cut(s)	42, 504, 934
SinI	GGWCC	4 cut(s)	286, 523, 840, 917
SmiMI	CAYNNNNRTG	3 cut(s)	50, 308, 629
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	6 cut(s)	117, 329, 542, 563, 857, 909
SsiI	CCGC	5 cut(s)	137, 145, 552, 660, 920
SspMI	CTAG	2 cut(s)	182, 666
SstI	GAGCTC	2 cut(s)	246, 392
StyD4I	CCNGG	2 cut(s)	233, 705
TaaI	ACNGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	93, 153
TasI	AATT	6 cut(s)	117, 329, 542, 563, 857, 909
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	2 cut(s)	322, 814
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	3 cut(s)	36, 63, 216
TseFI	GTSAC	2 cut(s)	41, 631
TseI	GCWGC	3 cut(s)	113, 415, 586
Tsp45I	GTSAC	2 cut(s)	41, 631
TspDTI	ATGAA	4 cut(s)	238, 587, 617, 827
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	3 cut(s)	36, 63, 216
Van91I	CCANNNNNTGG	1 cut(s)	62
VpaK11BI	GGWCC	4 cut(s)	286, 523, 840, 917
XapI	RAATTY	1 cut(s)	542
XbaI	TCTAGA	1 cut(s)	665
XspI	CTAG	2 cut(s)	182, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.