Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010069.1

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Reverse (-)

7729 .. 8055

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010069.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

atggcaaaggttccttcagtaaccctaagctcctccggtgatgagatcctgaccatgcctatcatcggcatgggaacttcatcgtaccctcgggccgacccagaaaccgccaaggctgccattctcgaagcgatcagagctggttaccgacattttgacaccgcctttgcctacgggtcggagcaagatctcggtgaagccatagccgaggctctccgtctcggactcatcaactctagggatgagctcttcatcacaaccaagctttgggctagtttcgccgagaaagaccttgtgctgccgtccatcaaagccagtttaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

108

Amino Acids

11.65

Weight (kDa)

5.07

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AciI	CCGC	2 cut(s)	108, 162
AclWI	GGATC	1 cut(s)	40
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	3 cut(s)	65, 267, 321
AluBI	AGCT	4 cut(s)	30, 140, 247, 265
AluI	AGCT	4 cut(s)	30, 140, 247, 265
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	116, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	50, 206
AvaI	CYCGRG	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	103, 285
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	2 cut(s)	237, 273
BglII	AGATCT	1 cut(s)	187
BisI	GCNGC	2 cut(s)	117, 299
BlsI	GCNGC	2 cut(s)	118, 300
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	26
BsaJI	CCNNGG	3 cut(s)	89, 111, 207
BsaWI	WCCGGW	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 267, 321
Bse1I	ACTGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	89, 111, 207
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	3 cut(s)	65, 267, 321
BseNI	ACTGG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	103, 285
BshFI	GGCC	1 cut(s)	95
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	36
BslI	CCNNNNNNNGG	3 cut(s)	65, 267, 321
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	95
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	45, 132, 187
BspACI	CCGC	2 cut(s)	108, 162
BspANI	GGCC	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	40
BspQI	GCTCTTC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	315
BssECI	CCNNGG	3 cut(s)	89, 111, 207
BssMI	GATC	3 cut(s)	45, 132, 187
BssT1I	CCWWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	26
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	247
BstKTI	GATC	3 cut(s)	48, 135, 190
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	3 cut(s)	45, 132, 187
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 137, 278
BstPI	GGTNACC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	103, 285
BstX2I	RGATCY	2 cut(s)	45, 187
BstYI	RGATCY	2 cut(s)	45, 187
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	247
Cfr13I	GGNCC	1 cut(s)	93
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	55, 70
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	3 cut(s)	47, 134, 189
DpnII	GATC	3 cut(s)	45, 132, 187
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	90
Eco91I	GGTNACC	1 cut(s)	143
EcoICRI	GAGCTC	1 cut(s)	247
EcoO65I	GGTNACC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	111
Esp3I	CGTCTC	1 cut(s)	224
FaeI	CATG	2 cut(s)	58, 73
FaiI	YATR	3 cut(s)	56, 71, 203
FatI	CATG	2 cut(s)	54, 69
Fnu4HI	GCNGC	2 cut(s)	117, 299
FokI	GGATG	1 cut(s)	254
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	2 cut(s)	117, 299
FspBI	CTAG	2 cut(s)	237, 273
GluI	GCNGC	2 cut(s)	117, 299
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	36
Hin1II	CATG	2 cut(s)	58, 73
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	2 cut(s)	50, 206
Hpy188I	TCNGA	3 cut(s)	137, 181, 224
Hpy188III	TCNNGA	2 cut(s)	49, 125
HpyAV	CCTTC	1 cut(s)	24
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 137, 278
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	58, 73
Kzo9I	GATC	3 cut(s)	45, 132, 187
LguI	GCTCTTC	1 cut(s)	254
LmnI	GCTCC	2 cut(s)	35, 181
LpnPI	CCDG	4 cut(s)	49, 62, 114, 126
Lsp1109I	GCAGC	2 cut(s)	103, 285
MaeI	CTAG	2 cut(s)	237, 273
MaeIII	GTNAC	2 cut(s)	19, 143
MalI	GATC	3 cut(s)	47, 134, 189
MboI	GATC	3 cut(s)	45, 132, 187
MboII	GAAGA	1 cut(s)	241
MflI	RGATCY	2 cut(s)	45, 187
MhlI	GDGCHC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	3 cut(s)	43, 99, 202
MseI	TTAA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	68
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	3 cut(s)	116, 137, 278
NdeII	GATC	3 cut(s)	45, 132, 187
NlaIII	CATG	2 cut(s)	58, 73
NlaIV	GGNNCC	1 cut(s)	12
NmeAIII	GCCGAG	2 cut(s)	232, 307
PciSI	GCTCTTC	1 cut(s)	254
PflMI	CCANNNNNTGG	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	118, 300
PleI	GAGTC	1 cut(s)	219
PpsI	GAGTC	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	249
PspEI	GGTNACC	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	45, 187
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	68
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	320
SatI	GCNGC	2 cut(s)	117, 299
Sau3AI	GATC	3 cut(s)	45, 132, 187
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	219
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	7 cut(s)	12, 32, 142, 249, 267, 294, 326
SmiMI	CAYNNNNRTG	1 cut(s)	68
SsiI	CCGC	2 cut(s)	108, 162
SspMI	CTAG	2 cut(s)	237, 273
SstI	GAGCTC	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	111
TaqI	TCGA	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	320
Tru9I	TTAA	1 cut(s)	320
TseI	GCWGC	2 cut(s)	116, 298
TspDTI	ATGAA	2 cut(s)	69, 241
TspGWI	ACGGA	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	267
XspI	CTAG	2 cut(s)	237, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.