Rh7DG396600

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003272
Physical Location & Seq
Forward (+)
54384782 .. 54386238
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG396600.1

Sequence Viewer

Length: 966 bp
ATGGCATCATTAAAAGTTTCTTCAGTAAAACTAGGATCATCTGGTGATGAAATTACCATGCCAGTAATAGGCATGGGAACTTCATCGCACCCTCCGGTGGACCGTCAAACGGCCAAGGCTGCCATTCTTGAAGCAATCAAAGTGGGTTACCGCCACTTTGACACCGCCTTTGCTTATGGTAATTCAGAGCAACATTTGGGGGAAGCTATTGCTGATGCTCTACGTCTTGGACTCATCGAGTCGAGGGATGAGCTCTTCATCACAACCAAGCTTTGGGCCAGCTTTGCTGAAAGAGATCTTGTGCTGCCTGCAATCAGCACCAGTTTAAGGAATCTTCAAATGGAGTATGTTGATATGTACATAATACATTGGCCATTCAAATTGGGGCGAGAGATGACGGGTATGCCTCTCGACGAAGATCAGGTACAACCCCTCGATATCAAATCTGTTTGGGAGGGCATGGAAGAATGCAAGAAACTCGGCCTTGCGAGGGGCATTGGCGTCAGTAATTTCACCACCAAGATGCTCGAGGAGCTCCTCTCCATCGCCAAAATCCCTCCTGCCGTCAATCATGTGGAGATGAGCCCAGCTTGGCAGGTGAAGAAACTGAGGGAGTTTTGCGAGGCAAAAGGGATACATGTCACAGCTTACTCTCCACTGGGTGCATCTGGGACTTCATGGGGAGACGATAGGGTTTTAGGCTCACAAGTCCTCCAACAGATTGCCAAAGCAAAAGGGAAAACAACTGCTCAGATATCGTTGAGATGGGTATATGAGCAAGGGGTGAGCATGGTAGCGAAAAGCTACAACAAAGAAAGAATGAGGCAGAACCTTGATATCTTCGACTGGTCCTTGACTGAGGATGAGTTGCAGAAGATAAGTCGTCTTCCACAGATCAAAGGCTTCGTTTTTGCTTCACTTTTGGGACAGCATGAACTACTGCTTCAGATTGACAGTGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

321

Amino Acids

35.71

Weight (kDa)

6.02

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 23 - 295 1.1e-53 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 586
Acc36I ACCTGC 1 cut(s) 586
AccB7I CCANNNNNTGG 1 cut(s) 273
AciI CCGC 2 cut(s) 151, 165
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 2 cut(s) 111, 371
AcuI CTGAAG 2 cut(s) 6, 929
AcyI GRCGYC 1 cut(s) 501
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 359, 426
AfiI CCNNNNNNNGG 6 cut(s) 68, 97, 109, 273, 327, 490
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 3 cut(s) 131, 338, 379
AluBI AGCT 8 cut(s) 206, 253, 271, 282, 535, 590, 647, 804
AluI AGCT 8 cut(s) 206, 253, 271, 282, 535, 590, 647, 804
Alw21I GWGCWC 2 cut(s) 255, 537
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 4 cut(s) 111, 276, 371, 481
ApeKI GCWGC 2 cut(s) 119, 304
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspS9I GGNCC 3 cut(s) 100, 276, 849
AsuHPI GGTGA 4 cut(s) 56, 505, 610, 796
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 2 cut(s) 100, 849
BalI TGGCCA 1 cut(s) 373
BanII GRGCYC 3 cut(s) 255, 537, 587
BarI GAAGNNNNNNTAC 2 cut(s) 408, 440
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 2 cut(s) 255, 537
BbvI GCAGC 2 cut(s) 106, 291
BccI CCATC 2 cut(s) 551, 759
BceAI ACGGC 2 cut(s) 126, 548
BcgI CGANNNNNNTGC 2 cut(s) 460, 494
BciVI GTATCC 1 cut(s) 627
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 1 cut(s) 32
BfuAI ACCTGC 1 cut(s) 586
BfuI GTATCC 1 cut(s) 627
BglII AGATCT 1 cut(s) 295
BisI GCNGC 2 cut(s) 120, 305
BlsI GCNGC 2 cut(s) 121, 306
Bme18I GGWCC 2 cut(s) 100, 849
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 3 cut(s) 100, 276, 849
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 4 cut(s) 14, 205, 513, 674
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 1 cut(s) 878
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 696, 726
Bsc4I CCNNNNNNNGG 6 cut(s) 68, 97, 109, 273, 327, 490
Bse1I ACTGG 4 cut(s) 62, 321, 663, 851
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 2 cut(s) 253, 868
BseLI CCNNNNNNNGG 6 cut(s) 68, 97, 109, 273, 327, 490
BseMII CTCAG 3 cut(s) 599, 764, 849
BseNI ACTGG 4 cut(s) 62, 321, 663, 851
BseRI GAGGAG 2 cut(s) 527, 545
BseXI GCAGC 2 cut(s) 106, 291
BseYI CCCAGC 1 cut(s) 586
BshFI GGCC 4 cut(s) 113, 278, 373, 483
BsiHKAI GWGCWC 2 cut(s) 255, 537
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 685, 939
BslI CCNNNNNNNGG 6 cut(s) 68, 97, 109, 273, 327, 490
BsmAI GTCTC 1 cut(s) 678
BsmBI CGTCTC 1 cut(s) 678
BsmFI GGGAC 2 cut(s) 685, 939
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 4 cut(s) 113, 278, 373, 483
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 255, 537, 587
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 4 cut(s) 35, 295, 418, 894
BspACI CCGC 2 cut(s) 151, 165
BspANI GGCC 4 cut(s) 113, 278, 373, 483
BspCNI CTCAG 3 cut(s) 600, 763, 850
BspMI ACCTGC 1 cut(s) 586
BspPI GGATC 1 cut(s) 43
BspQI GCTCTTC 1 cut(s) 260
BsrGI TGTACA 1 cut(s) 357
BsrI ACTGG 4 cut(s) 62, 321, 663, 851
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 35, 295, 418, 894
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 114
Bst4CI ACNGT 2 cut(s) 104, 956
Bst6I CTCTTC 1 cut(s) 260
BstACI GRCGYC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 280, 309
BstDEI CTNAG 3 cut(s) 608, 750, 858
BstEII GGTNACC 1 cut(s) 146
BstF5I GGATG 2 cut(s) 253, 868
BstKTI GATC 4 cut(s) 38, 298, 421, 897
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 4 cut(s) 35, 295, 418, 894
BstMWI GCNNNNNNNGC 3 cut(s) 119, 284, 532
BstNSI RCATGY 1 cut(s) 641
BstPI GGTNACC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 106, 291
BstV2I GAAGAC 1 cut(s) 878
BstX2I RGATCY 1 cut(s) 295
BstYI RGATCY 1 cut(s) 295
BsuI GTATCC 1 cut(s) 627
BsuRI GGCC 4 cut(s) 113, 278, 373, 483
BtgZI GCGATG 2 cut(s) 69, 529
BtsCI GGATG 2 cut(s) 253, 868
BtsIMutI CAGTG 2 cut(s) 656, 961
BveI ACCTGC 1 cut(s) 586
Cac8I GCNNGC 2 cut(s) 280, 309
Cfr13I GGNCC 3 cut(s) 100, 276, 849
CseI GACGC 1 cut(s) 490
Csp6I GTAC 2 cut(s) 358, 425
CspCI CAANNNNNGTGG 2 cut(s) 123, 158
CviAII CATG 8 cut(s) 58, 73, 460, 572, 638, 678, 790, 932
CviQI GTAC 2 cut(s) 358, 425
DdeI CTNAG 3 cut(s) 608, 750, 858
DpnI GATC 4 cut(s) 37, 297, 420, 896
DpnII GATC 4 cut(s) 35, 295, 418, 894
DraIII CACNNNGTG 1 cut(s) 662
EaeI YGGCCR 2 cut(s) 111, 371
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 2 cut(s) 253, 535
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 3 cut(s) 255, 537, 587
Eco32I GATATC 3 cut(s) 439, 756, 838
Eco47I GGWCC 2 cut(s) 100, 849
Eco53kI GAGCTC 2 cut(s) 253, 535
Eco57I CTGAAG 2 cut(s) 6, 929
Eco88I CYCGRG 1 cut(s) 527
Eco91I GGTNACC 1 cut(s) 146
EcoICRI GAGCTC 2 cut(s) 253, 535
EcoO65I GGTNACC 1 cut(s) 146
EcoRV GATATC 3 cut(s) 439, 756, 838
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 3 cut(s) 255, 537, 587
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 678
FaeI CATG 8 cut(s) 61, 76, 463, 575, 641, 681, 793, 935
FaqI GGGAC 2 cut(s) 685, 939
FatI CATG 8 cut(s) 57, 72, 459, 571, 637, 677, 789, 931
Fnu4HI GCNGC 2 cut(s) 120, 305
FokI GGATG 2 cut(s) 260, 875
FriOI GRGCYC 3 cut(s) 255, 537, 587
Fsp4HI GCNGC 2 cut(s) 120, 305
FspBI CTAG 1 cut(s) 32
GluI GCNGC 2 cut(s) 120, 305
GsaI CCCAGC 1 cut(s) 590
HaeIII GGCC 4 cut(s) 113, 278, 373, 483
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 8 cut(s) 61, 76, 463, 575, 641, 681, 793, 935
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 3 cut(s) 231, 239, 331
HpaII CCGG 1 cut(s) 95
HphI GGTGA 4 cut(s) 56, 505, 610, 796
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 187, 753, 948
Hpy188III TCNNGA 2 cut(s) 128, 410
Hpy8I GTNNAC 1 cut(s) 100
Hpy99I CGWCG 1 cut(s) 416
HpyCH4III ACNGT 2 cut(s) 104, 956
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 4 cut(s) 311, 471, 665, 871
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 284, 532
HpyF3I CTNAG 3 cut(s) 608, 750, 858
HpySE526I ACGT 1 cut(s) 223
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 8 cut(s) 61, 76, 463, 575, 641, 681, 793, 935
Kzo9I GATC 4 cut(s) 35, 295, 418, 894
LguI GCTCTTC 1 cut(s) 260
LmnI GCTCC 2 cut(s) 532, 540
Lsp1109I GCAGC 2 cut(s) 106, 291
LweI GCATC 4 cut(s) 14, 205, 513, 674
MaeI CTAG 1 cut(s) 32
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 146, 640
MalI GATC 4 cut(s) 37, 297, 420, 896
MboI GATC 4 cut(s) 35, 295, 418, 894
MboII GAAGA 9 cut(s) 12, 247, 326, 428, 476, 613, 832, 878, 886
MflI RGATCY 1 cut(s) 295
MhlI GDGCHC 3 cut(s) 255, 537, 587
MlsI TGGCCA 1 cut(s) 373
MluCI AATT 4 cut(s) 51, 181, 380, 508
MluNI TGGCCA 1 cut(s) 373
MlyI GAGTC 2 cut(s) 225, 248
MmeI TCCRAC 1 cut(s) 739
Mox20I TGGCCA 1 cut(s) 373
MscI TGGCCA 1 cut(s) 373
MseI TTAA 2 cut(s) 11, 326
MslI CAYNNNNRTG 1 cut(s) 521
Msp20I TGGCCA 1 cut(s) 373
MspI CCGG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 473
MwoI GCNNNNNNNGC 3 cut(s) 119, 284, 532
NdeII GATC 4 cut(s) 35, 295, 418, 894
NlaIII CATG 8 cut(s) 61, 76, 463, 575, 641, 681, 793, 935
NmeAIII GCCGAG 1 cut(s) 459
NmuCI GTSAC 1 cut(s) 640
NspI RCATGY 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 527
PaqCI CACCTGC 1 cut(s) 586
PciI ACATGT 1 cut(s) 637
PciSI GCTCTTC 1 cut(s) 260
PctI GAATGC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 331
PflMI CCANNNNNTGG 1 cut(s) 273
PkrI GCNGC 2 cut(s) 121, 306
PleI GAGTC 2 cut(s) 225, 247
PpsI GAGTC 2 cut(s) 225, 247
PscI ACATGT 1 cut(s) 637
Psp124BI GAGCTC 2 cut(s) 255, 537
PspEI GGTNACC 1 cut(s) 146
PspFI CCCAGC 1 cut(s) 586
PspPI GGNCC 3 cut(s) 100, 276, 849
PspXI VCTCGAGB 1 cut(s) 527
PsuI RGATCY 1 cut(s) 295
RsaI GTAC 2 cut(s) 359, 426
RsaNI GTAC 2 cut(s) 358, 425
RseI CAYNNNNRTG 1 cut(s) 521
SacI GAGCTC 2 cut(s) 255, 537
SapI GCTCTTC 1 cut(s) 260
SaqAI TTAA 2 cut(s) 11, 326
SatI GCNGC 2 cut(s) 120, 305
Sau3AI GATC 4 cut(s) 35, 295, 418, 894
Sau96I GGNCC 3 cut(s) 100, 276, 849
SchI GAGTC 2 cut(s) 225, 248
SduI GDGCHC 3 cut(s) 255, 537, 587
SfaNI GCATC 4 cut(s) 14, 205, 513, 674
Sfr274I CTCGAG 1 cut(s) 527
SinI GGWCC 2 cut(s) 100, 849
SlaI CTCGAG 1 cut(s) 527
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 4 cut(s) 51, 181, 380, 508
SsiI CCGC 2 cut(s) 151, 165
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 2 cut(s) 255, 537
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 104, 956
TaiI ACGT 1 cut(s) 226
TaqI TCGA 6 cut(s) 237, 242, 411, 435, 528, 843
TasI AATT 4 cut(s) 51, 181, 380, 508
TatI WGTACW 1 cut(s) 357
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 2 cut(s) 11, 326
Tru9I TTAA 2 cut(s) 11, 326
TscAI CASTG 2 cut(s) 663, 961
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 2 cut(s) 119, 304
Tsp45I GTSAC 1 cut(s) 640
TspDTI ATGAA 5 cut(s) 63, 72, 247, 666, 948
TspRI CASTG 2 cut(s) 663, 961
Van91I CCANNNNNTGG 1 cut(s) 273
VpaK11BI GGWCC 2 cut(s) 100, 849
XceI RCATGY 1 cut(s) 641
XhoI CTCGAG 1 cut(s) 527
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.