Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003272

Physical Location & Seq

Genomic Coordinates Reverse (-)

702379 .. 703921

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g01140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGACGCCAATGATAGTTCCTGAGGTAACACTGAGCTCCTGCGACACGACGATGCCAGTGATCGGCATGGGGACTTCATCGTACCCTAAAGTTGACCCTGAAACAGCCAAGGCTGCAATTCCTGAAGCCATCAGAGCGGGCTACCGCCACTTCGACACTGCCTTTGCATACGGGTCAGAGCAAGATCTGGGGGAAGCCATAGCTGAAGCACTGCGTCTTGGACTCGTCAAGTCCAGGACCGAGCTCTTCATCACCACCAAGCTTTTTGCCAGCTTTGCTGAAAGAGAGCTTGTAGTGCCTGCCATCAACAAGAGTTTAAGGAATCTGCAATTGGAGTATGTGGATATGTACCTAATACATTGGCCCTTCAAATTTGGGAAAGTGGTGAGCTCTATGCCAGTGGAAAAGGGGGTGCTGCTACCCTTAGACATCAAATCAGTTTGGGAAGGCATGGAAGAATGCAAGAGATTGGGCCTTGCGAGGGGCATTGGCGTGAGTAACTTCACTTCCGAGATGCTTGAGGACCTCCTTTCCATCGCCAAAATCCCTCCCGCCCTCAACCAATTGGAGATGAACCCACTTTGGCAGCTGAAGAAACTGAGGGAGTTCTGTAAGGCAAAGGGCATTCATGTGACGGCCTACTCTCCGTTAGGTTCAACCGGGACTAAATTTGGAGGCAACAAAGTCTTAGGCTCGAAAGTCCTCCAAGACATTGCCGAATCCAAAGGAAAAACAACTGCTCAGATAGCGTTGAGATGGGTGTACCAGCAAGGGGTGAGCTTGGTAACAAAGAGCGTCAATAAGGAAAGAATGAATCAGAACATTGACATCTTCGGTTGGTCCTTGACTGAGGAGGAATTAGACGAGATTAGTCGTCTTCCTCAACACAAAACAATCACCTTCGCCTCAATTATGGGACCGCATGATGTTGTGCTCCAGGTCGATGCTGGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00053 map00053

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

319

Amino Acids

35.16

Weight (kDa)

6.55

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003272)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35841 FvH4_4g35841
malus_domestica	MD13G1014600.v1.1 MD16G1011800.v1.1 MD16G1012000.v1.1
prunus_persica	Prupe.1G339000_v2.0.a1
pyrus_communis	pycom13g01250 pycom16g01130 pycom16g01140
rosa_chinensis	RchiOBHm_Chr4g0445431 RchiOBHm_Chr7g0228181
rosa_laevigata	RLG00000001581 RLG00000005048 RLG00000005739 RLG00000005741
rosa_multiflora	Rmu_co8260649.1_g000001 Rmu_co8279203.1_g000001 Rmu_sc0001062.1_g000015 Rmu_sc0001509.1_g000007 Rmu_sc0010069.1_g000002
rosa_roxburghii	Rroxscaffold_3G00231320 Rroxscaffold_5G00385940
rosa_rugosa	Rorug04G0361200 Rorug04G0361400 Rorug07G0246600
rosa_samantha	Rh4BG434700 Rh4BG434900 Rh4CG449600 Rh4CG449800 Rh4DG430900 Rh4DG431100 Rh7AG400500 Rh7BG382000 Rh7CG418700 Rh7DG396600
rosa_wichuraiana	Rw4G036250 Rw7G033270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	137
AciI	CCGC	4 cut(s)	137, 145, 552, 920
AcsI	RAATTY	2 cut(s)	371, 668
AcuI	CTGAAG	3 cut(s)	144, 225, 611
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	83, 350, 764
AfiI	CCNNNNNNNGG	3 cut(s)	62, 481, 772
AgsI	TTSAA	2 cut(s)	370, 657
AjnI	CCWGG	2 cut(s)	233, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	9 cut(s)	36, 203, 244, 262, 273, 289, 390, 589, 780
AluI	AGCT	9 cut(s)	36, 203, 244, 262, 273, 289, 390, 589, 780
Alw21I	GWGCWC	4 cut(s)	38, 246, 392, 936
AoxI	GGCC	3 cut(s)	362, 472, 636
ApeKI	GCWGC	3 cut(s)	113, 415, 586
ApoI	RAATTY	2 cut(s)	371, 668
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspS9I	GGNCC	6 cut(s)	237, 363, 472, 523, 840, 917
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	4 cut(s)	244, 397, 787, 889
AvaII	GGWCC	4 cut(s)	237, 523, 840, 917
AxyI	CCTNAGG	1 cut(s)	21
BanII	GRGCYC	3 cut(s)	38, 246, 392
BarI	GAAGNNNNNNTAC	2 cut(s)	490, 522
BbsI	GAAGAC	1 cut(s)	869
Bbv12I	GWGCWC	4 cut(s)	38, 246, 392, 936
BbvI	GCAGC	3 cut(s)	100, 402, 598
BccI	CCATC	4 cut(s)	137, 311, 542, 750
BceAI	ACGGC	1 cut(s)	651
BciT130I	CCWGG	2 cut(s)	235, 938
BcnI	CCSGG	1 cut(s)	661
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	3 cut(s)	114, 416, 587
BlsI	GCNGC	3 cut(s)	115, 417, 588
Bme1390I	CCNGG	3 cut(s)	235, 661, 938
Bme18I	GGWCC	4 cut(s)	237, 523, 840, 917
BmgT120I	GGNCC	6 cut(s)	237, 363, 472, 523, 840, 917
BmiI	GGNNCC	1 cut(s)	918
BmrFI	CCNGG	3 cut(s)	235, 661, 938
BmsI	GCATC	3 cut(s)	42, 504, 934
BpiI	GAAGAC	1 cut(s)	869
BpmI	CTGGAG	1 cut(s)	920
BpuEI	CTTGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 481, 772
Bse1I	ACTGG	2 cut(s)	56, 398
Bse21I	CCTNAGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	711
BseBI	CCWGG	2 cut(s)	235, 938
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	62, 481, 772
BseMI	GCAATG	1 cut(s)	711
BseMII	CTCAG	5 cut(s)	12, 23, 590, 755, 840
BseNI	ACTGG	2 cut(s)	56, 398
BseRI	GAGGAG	1 cut(s)	866
BseXI	GCAGC	3 cut(s)	100, 402, 598
BshFI	GGCC	3 cut(s)	364, 474, 638
BsiHKAI	GWGCWC	4 cut(s)	38, 246, 392, 936
BsiSI	CCGG	1 cut(s)	660
BslFI	GGGAC	3 cut(s)	85, 676, 930
BslI	CCNNNNNNNGG	3 cut(s)	62, 481, 772
BsmFI	GGGAC	3 cut(s)	85, 676, 930
BsmI	GAATGC	2 cut(s)	464, 624
BsnI	GGCC	3 cut(s)	364, 474, 638
Bsp1286I	GDGCHC	4 cut(s)	38, 246, 392, 936
Bsp143I	GATC	2 cut(s)	60, 184
BspACI	CCGC	4 cut(s)	137, 145, 552, 920
BspANI	GGCC	3 cut(s)	364, 474, 638
BspCNI	CTCAG	5 cut(s)	13, 24, 591, 754, 841
BspLI	GGNNCC	1 cut(s)	918
BspQI	GCTCTTC	1 cut(s)	251
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	711
BsrI	ACTGG	2 cut(s)	56, 398
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	60, 184
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	235, 938
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	3 cut(s)	139, 271, 300
BstDEI	CTNAG	7 cut(s)	21, 32, 424, 599, 688, 741, 849
BstKTI	GATC	2 cut(s)	63, 187
BstMBI	GATC	2 cut(s)	60, 184
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 134, 275, 295, 746
BstNI	CCWGG	2 cut(s)	235, 938
BstSCI	CCNGG	3 cut(s)	233, 659, 936
BstV1I	GCAGC	3 cut(s)	100, 402, 598
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	3 cut(s)	364, 474, 638
BtgZI	GCGATG	1 cut(s)	520
BtsI	GCAGTG	2 cut(s)	156, 209
BtsIMutI	CAGTG	5 cut(s)	29, 63, 156, 209, 405
Cac8I	GCNNGC	3 cut(s)	139, 271, 300
Cfr13I	GGNCC	6 cut(s)	237, 363, 472, 523, 840, 917
CseI	GACGC	3 cut(s)	13, 203, 784
Csp6I	GTAC	3 cut(s)	82, 349, 763
CviAII	CATG	4 cut(s)	67, 451, 629, 923
CviQI	GTAC	3 cut(s)	82, 349, 763
DdeI	CTNAG	7 cut(s)	21, 32, 424, 599, 688, 741, 849
DpnI	GATC	2 cut(s)	62, 186
DpnII	GATC	2 cut(s)	60, 184
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
Ecl136II	GAGCTC	3 cut(s)	36, 244, 390
Eco130I	CCWWGG	1 cut(s)	108
Eco24I	GRGCYC	3 cut(s)	38, 246, 392
Eco47I	GGWCC	4 cut(s)	237, 523, 840, 917
Eco53kI	GAGCTC	3 cut(s)	36, 244, 390
Eco57I	CTGAAG	3 cut(s)	144, 225, 611
Eco81I	CCTNAGG	1 cut(s)	21
EcoICRI	GAGCTC	3 cut(s)	36, 244, 390
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	2 cut(s)	233, 936
EcoT14I	CCWWGG	1 cut(s)	108
EcoT38I	GRGCYC	3 cut(s)	38, 246, 392
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	4 cut(s)	70, 454, 632, 926
FaqI	GGGAC	3 cut(s)	85, 676, 930
FatI	CATG	4 cut(s)	66, 450, 628, 922
FauI	CCCGC	2 cut(s)	130, 559
Fnu4HI	GCNGC	3 cut(s)	114, 416, 587
FriOI	GRGCYC	3 cut(s)	38, 246, 392
Fsp4HI	GCNGC	3 cut(s)	114, 416, 587
GluI	GCNGC	3 cut(s)	114, 416, 587
GsuI	CTGGAG	1 cut(s)	920
HaeIII	GGCC	3 cut(s)	364, 474, 638
HapII	CCGG	1 cut(s)	660
HgaI	GACGC	3 cut(s)	13, 203, 784
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	70, 454, 632, 926
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	4 cut(s)	222, 322, 719, 814
HpaII	CCGG	1 cut(s)	660
HphI	GGTGA	4 cut(s)	244, 397, 787, 889
Hpy166II	GTNNAC	2 cut(s)	94, 763
Hpy188I	TCNGA	5 cut(s)	134, 178, 511, 744, 819
Hpy188III	TCNNGA	2 cut(s)	20, 122
Hpy8I	GTNNAC	2 cut(s)	94, 763
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	376, 440, 910
HpyCH4V	TGCA	4 cut(s)	116, 167, 328, 462
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 134, 275, 295, 746
HpyF3I	CTNAG	7 cut(s)	21, 32, 424, 599, 688, 741, 849
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	70, 454, 632, 926
Kzo9I	GATC	2 cut(s)	60, 184
LguI	GCTCTTC	1 cut(s)	251
LmnI	GCTCC	2 cut(s)	41, 939
Lsp1109I	GCAGC	3 cut(s)	100, 402, 598
LweI	GCATC	3 cut(s)	42, 504, 934
MaeIII	GTNAC	4 cut(s)	25, 497, 631, 784
MalI	GATC	2 cut(s)	62, 186
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	60, 184
MboII	GAAGA	5 cut(s)	238, 467, 604, 823, 869
MfeI	CAATTG	2 cut(s)	329, 563
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	4 cut(s)	38, 246, 392, 936
MluCI	AATT	7 cut(s)	117, 329, 371, 563, 668, 857, 909
MlyI	GAGTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	3 cut(s)	50, 491, 629
MspA1I	CMGCKG	1 cut(s)	589
MspI	CCGG	1 cut(s)	660
MspR9I	CCNGG	3 cut(s)	235, 661, 938
MunI	CAATTG	2 cut(s)	329, 563
Mva1269I	GAATGC	2 cut(s)	464, 624
MvaI	CCWGG	2 cut(s)	235, 938
MwoI	GCNNNNNNNGC	5 cut(s)	113, 134, 275, 295, 746
NciI	CCSGG	1 cut(s)	661
NdeII	GATC	2 cut(s)	60, 184
NlaIII	CATG	4 cut(s)	70, 454, 632, 926
NlaIV	GGNNCC	1 cut(s)	918
NmuCI	GTSAC	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	251
PctI	GAATGC	2 cut(s)	464, 624
PfeI	GAWTC	3 cut(s)	322, 719, 814
PfoI	TCCNGGA	1 cut(s)	233
PkrI	GCNGC	3 cut(s)	115, 417, 588
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	523
Psp124BI	GAGCTC	3 cut(s)	38, 246, 392
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	2 cut(s)	233, 936
PspGI	CCWGG	2 cut(s)	233, 936
PspN4I	GGNNCC	1 cut(s)	918
PspPI	GGNCC	6 cut(s)	237, 363, 472, 523, 840, 917
PspPPI	RGGWCCY	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	589
RsaI	GTAC	3 cut(s)	83, 350, 764
RsaNI	GTAC	3 cut(s)	82, 349, 763
RseI	CAYNNNNRTG	3 cut(s)	50, 491, 629
SacI	GAGCTC	3 cut(s)	38, 246, 392
SapI	GCTCTTC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	3 cut(s)	114, 416, 587
Sau3AI	GATC	2 cut(s)	60, 184
Sau96I	GGNCC	6 cut(s)	237, 363, 472, 523, 840, 917
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	3 cut(s)	235, 661, 938
SduI	GDGCHC	4 cut(s)	38, 246, 392, 936
SfaNI	GCATC	3 cut(s)	42, 504, 934
SinI	GGWCC	4 cut(s)	237, 523, 840, 917
SmiMI	CAYNNNNRTG	3 cut(s)	50, 491, 629
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	7 cut(s)	117, 329, 371, 563, 668, 857, 909
SsiI	CCGC	4 cut(s)	137, 145, 552, 920
SstI	GAGCTC	3 cut(s)	38, 246, 392
StyD4I	CCNGG	3 cut(s)	233, 659, 936
StyI	CCWWGG	1 cut(s)	108
TaqI	TCGA	3 cut(s)	153, 695, 942
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	7 cut(s)	117, 329, 371, 563, 668, 857, 909
TfiI	GAWTC	3 cut(s)	322, 719, 814
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	5 cut(s)	36, 63, 163, 216, 405
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	3 cut(s)	113, 415, 586
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	5 cut(s)	66, 238, 587, 617, 827
TspGWI	ACGGA	1 cut(s)	636
TspRI	CASTG	5 cut(s)	36, 63, 163, 216, 405
VpaK11BI	GGWCC	4 cut(s)	237, 523, 840, 917
XapI	RAATTY	2 cut(s)	371, 668
XcmI	CCANNNNNNNNNTGG	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.