RchiOBHm_Chr4g0445451

D-galacturonate reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0021078
Physical Location & Seq
Forward (+)
65900658 .. 65900873
216 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41304

Sequence Viewer

Length: 216 bp
ATGACGGGTATGCCTCTCGACGAAGATCAGGTACAACCCCTCGATATCAAATCTGTTTGGGAGGGCATGGAAGAATGCAAGAAACTCGGCCTAGCAAGGGGCATTGGCGTCAATAATTTCACCTCCAAGATGCTCGAGGAGTTCCTCTCCATCGCCAAAATCCCTCCTGCCATCAATCATATACGCACATATATATATCGATCCATTACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 map00053
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

71

Amino Acids

8.03

Weight (kDa)

5.7

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 14 - 68 1.4e-06 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021078)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17890
pyrus_communis pycom14g20320
rosa_chinensis RchiOBHm_Chr4g0445451
rosa_multiflora Rmu_sc0040608.1_g000001
rosa_rugosa Rorug04G0361400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AlwI GGATC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BccI CCATC 2 cut(s) 158, 179
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BfaI CTAG 3 cut(s) 92, 210, 214
BmeT110I CYCGRG 1 cut(s) 134
BmsI GCATC 1 cut(s) 120
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bsa29I ATCGAT 1 cut(s) 199
BsaHI GRCGYC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseCI ATCGAT 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 90
BshVI ATCGAT 1 cut(s) 199
BsiHKCI CYCGRG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 97
BsmI GAATGC 1 cut(s) 80
BsnI GGCC 1 cut(s) 90
BsoBI CYCGRG 1 cut(s) 134
Bsp143I GATC 2 cut(s) 25, 200
BspANI GGCC 1 cut(s) 90
BspDI ATCGAT 1 cut(s) 199
BspPI GGATC 1 cut(s) 195
BssMI GATC 2 cut(s) 25, 200
BssNI GRCGYC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 108
BstKTI GATC 2 cut(s) 28, 203
BstMBI GATC 2 cut(s) 25, 200
Bsu15I ATCGAT 1 cut(s) 199
BsuRI GGCC 1 cut(s) 90
BsuTUI ATCGAT 1 cut(s) 199
BtgZI GCGATG 1 cut(s) 136
ClaI ATCGAT 1 cut(s) 199
CseI GACGC 1 cut(s) 97
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 67
CviJI RGCY 2 cut(s) 90, 213
CviKI_1 RGCY 2 cut(s) 90, 213
CviQI GTAC 1 cut(s) 32
DpnI GATC 2 cut(s) 27, 202
DpnII GATC 2 cut(s) 25, 200
Eco32I GATATC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 134
EcoRV GATATC 1 cut(s) 46
FaeI CATG 1 cut(s) 70
FaiI YATR 8 cut(s) 11, 68, 180, 182, 190, 192, 194, 196
FatI CATG 1 cut(s) 66
FspBI CTAG 3 cut(s) 92, 210, 214
HaeIII GGCC 1 cut(s) 90
HgaI GACGC 1 cut(s) 97
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 70
HphI GGTGA 1 cut(s) 112
Hpy188III TCNNGA 1 cut(s) 17
Hpy99I CGWCG 1 cut(s) 23
HpyCH4V TGCA 1 cut(s) 78
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 25, 200
LpnPI CCDG 2 cut(s) 14, 180
LweI GCATC 1 cut(s) 120
MaeI CTAG 3 cut(s) 92, 210, 214
MalI GATC 2 cut(s) 27, 202
MboI GATC 2 cut(s) 25, 200
MboII GAAGA 2 cut(s) 35, 83
MluCI AATT 1 cut(s) 115
MnlI CCTC 7 cut(s) 24, 50, 55, 130, 133, 155, 174
Mva1269I GAATGC 1 cut(s) 80
NdeII GATC 2 cut(s) 25, 200
NlaIII CATG 1 cut(s) 70
NmeAIII GCCGAG 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 134
PctI GAATGC 1 cut(s) 80
PspXI VCTCGAGB 1 cut(s) 134
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
Sau3AI GATC 2 cut(s) 25, 200
SetI ASST 3 cut(s) 33, 125, 215
SfaNI GCATC 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 134
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 115
SspMI CTAG 3 cut(s) 92, 210, 214
TaqI TCGA 4 cut(s) 18, 42, 135, 199
TasI AATT 1 cut(s) 115
XhoI CTCGAG 1 cut(s) 134
XspI CTAG 3 cut(s) 92, 210, 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.