FvH4_5g17900

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0017668
Physical Location & Seq
Forward (+)
10272920 .. 10275308
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17900.t1

Sequence Viewer

Length: 990 bp
ATGGATGCGAGAGGCAAGAAAGCAGTCGTGATACCAGAAGTGGTACTGAGTTCCGGGAAGAAGATGCCGGTGCTAGGCTTTGGCACCGGAGTCTTCGGGAAAACTCCACCAGCTCAAACCCTGGCCCTTATTCTCCTCGACGCCATCGAGCTTGGCTACCGTCACTTTGACACTGCTGCTCTCTATGGAACCGAAGAAGCTGTAGGTCTTGCCGTCGCCCAAGCCCTAGAGCGAGGTCTCGTCAAGTCCCGCGATGAGTTCTTCATCACTTCCAAGCTCTGGTGCCCTGACGCTCATCATGATCTAGTTCTCCCAGCTCTCAAATCGACACTACAGAGGCTTGGATTGGAGTATGTGGATCTATACCTGATTCATTGGCCGGTAAGGATGAAACCAGGAACTACGGGAGTACCAACTTCGAAAGATGTTTTGCTTCCCTTTGACATAATGGGGACATGGGAGGCCATGGAAGAGTGCTCCAGGCTGGGACTGGCCAAGTCTATTGGCGTCAGCAACTTTGGTACCAAAAAGCTCTCTCAAATCCTTGACAACGGAACCATCCCGCCGGCGGTCAATCAGGTAGAAATGAACCCATCTTGGCAGCAAGAGAAGCTGCGAGACTACTGTAAAGGGAAAGGAATTCATGTGACTGCATGGTCTCCATTGGGGTTCTATGGAGCTGCGGCCTGGGCTACAAAACCCTTGATAGACTATGCCATCATTAAGGACATCGCTGCTGCTAAAGGGAAGAGTGTAGCACAGGTAATACTCAGATCTATCATCCAACAAGGAGATGTGAGTGCTATCTCAAGGAGTTTCAACAAGGAGAGGATGAAGGATAATGCTCAAATATTTGATTGGGAGCTAACTGAGGATGAAATGAATAAGATCAAGGAGATTCCCCAGCGCAGGTTGAATGCAGGCGACTTCTTTGTTTCTGAAGACGGTCAATACAAATCCCTCGACGATCTTTGGGATGGCAACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

330

Amino Acids

36.34

Weight (kDa)

6.25

Isoelectric Point (pI)

35.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 25 - 300 3.9e-51 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017668)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17900
malus_domestica MD14G1241800.v1.1
rosa_chinensis RchiOBHm_Chr7g0177711
rosa_laevigata RLG00000005512
rosa_multiflora Rmu_sc0004786.1_g000003
rosa_roxburghii Rroxscaffold_3G00275630
rosa_rugosa Rorug06G0408500
rosa_samantha Rh7AG008200 Rh7BG008200 Rh7CG008600 Rh7DG008300
rosa_wichuraiana Rw7G000690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 655
Acc36I ACCTGC 1 cut(s) 900
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 3 cut(s) 83, 282, 521
AccB7I CCANNNNNTGG 1 cut(s) 279
AccII CGCG 1 cut(s) 252
AciI CCGC 4 cut(s) 250, 563, 569, 683
AclWI GGATC 1 cut(s) 366
AcoI YGGCCR 2 cut(s) 377, 492
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 960
AcyI GRCGYC 2 cut(s) 141, 507
AfaI GTAC 3 cut(s) 45, 411, 523
AfiI CCNNNNNNNGG 4 cut(s) 74, 279, 568, 909
AgsI TTSAA 2 cut(s) 820, 916
AjnI CCWGG 4 cut(s) 120, 394, 479, 686
AluBI AGCT 9 cut(s) 113, 151, 200, 277, 317, 532, 613, 680, 865
AluI AGCT 9 cut(s) 113, 151, 200, 277, 317, 532, 613, 680, 865
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 3 cut(s) 242, 612, 663
AlwI GGATC 1 cut(s) 366
AoxI GGCC 5 cut(s) 123, 377, 462, 492, 684
ApeKI GCWGC 6 cut(s) 176, 601, 613, 680, 734, 737
ApoI RAATTY 1 cut(s) 639
Asp718I GGTACC 1 cut(s) 521
AspLEI GCGC 1 cut(s) 909
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 419
BaeGI GKGCMC 1 cut(s) 287
BaeI ACNNNNGTAYC 4 cut(s) 393, 426, 505, 538
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 3 cut(s) 83, 282, 521
BbsI GAAGAC 2 cut(s) 85, 948
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 6 cut(s) 163, 600, 613, 667, 721, 724
BccI CCATC 5 cut(s) 152, 566, 601, 725, 971
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 4 cut(s) 122, 396, 481, 688
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 242, 612, 663
BfaI CTAG 3 cut(s) 74, 227, 305
BfmI CTRYAG 2 cut(s) 201, 332
BfuAI ACCTGC 1 cut(s) 900
BglII AGATCT 1 cut(s) 773
BisI GCNGC 7 cut(s) 177, 602, 614, 681, 684, 735, 738
BlsI GCNGC 7 cut(s) 178, 603, 615, 682, 685, 736, 739
Bme1390I CCNGG 5 cut(s) 55, 122, 396, 481, 688
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 5 cut(s) 85, 190, 284, 523, 556
BmrFI CCNGG 5 cut(s) 55, 122, 396, 481, 688
BmsI GCATC 1 cut(s) 54
BpiI GAAGAC 2 cut(s) 85, 948
BpmI CTGGAG 1 cut(s) 463
Bpu14I TTCGAA 1 cut(s) 419
BpuEI CTTGAG 1 cut(s) 793
BpuMI CCSGG 1 cut(s) 55
BsaHI GRCGYC 2 cut(s) 141, 507
BsaI GGTCTC 2 cut(s) 242, 663
BsaJI CCNNGG 3 cut(s) 120, 465, 687
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 279, 568, 909
Bse118I RCCGGY 3 cut(s) 67, 379, 565
Bse1I ACTGG 1 cut(s) 495
BseBI CCWGG 4 cut(s) 122, 396, 481, 688
BseDI CCNNGG 3 cut(s) 120, 465, 687
BseGI GGATG 7 cut(s) 10, 393, 558, 780, 837, 880, 982
BseLI CCNNNNNNNGG 4 cut(s) 74, 279, 568, 909
BseMII CTCAG 3 cut(s) 38, 784, 861
BseNI ACTGG 1 cut(s) 495
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 6 cut(s) 163, 600, 613, 667, 721, 724
BseYI CCCAGC 3 cut(s) 313, 484, 903
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 5 cut(s) 125, 379, 464, 494, 686
BshNI GGYRCC 3 cut(s) 83, 282, 521
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 5 cut(s) 54, 68, 87, 380, 566
BslFI GGGAC 3 cut(s) 232, 466, 501
BslI CCNNNNNNNGG 4 cut(s) 74, 279, 568, 909
BsmAI GTCTC 3 cut(s) 242, 612, 663
BsmFI GGGAC 3 cut(s) 232, 466, 501
BsmI GAATGC 1 cut(s) 922
BsnI GGCC 5 cut(s) 125, 379, 464, 494, 686
Bso31I GGTCTC 2 cut(s) 242, 663
Bsp119I TTCGAA 1 cut(s) 419
Bsp1286I GDGCHC 2 cut(s) 287, 479
Bsp143I GATC 5 cut(s) 301, 358, 773, 888, 967
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 4 cut(s) 250, 563, 569, 683
BspANI GGCC 5 cut(s) 125, 379, 464, 494, 686
BspCNI CTCAG 3 cut(s) 39, 783, 862
BspFNI CGCG 1 cut(s) 252
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 5 cut(s) 85, 190, 284, 523, 556
BspMI ACCTGC 1 cut(s) 900
BspPI GGATC 1 cut(s) 366
BspT104I TTCGAA 1 cut(s) 419
BspT107I GGYRCC 3 cut(s) 83, 282, 521
BspTNI GGTCTC 2 cut(s) 242, 663
BsrFI RCCGGY 3 cut(s) 67, 379, 565
BsrI ACTGG 1 cut(s) 495
BssAI RCCGGY 3 cut(s) 67, 379, 565
BssECI CCNNGG 3 cut(s) 120, 465, 687
BssMI GATC 5 cut(s) 301, 358, 773, 888, 967
BssNI GRCGYC 2 cut(s) 141, 507
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 4 cut(s) 122, 396, 481, 688
Bst4CI ACNGT 3 cut(s) 161, 626, 947
Bst6I CTCTTC 2 cut(s) 465, 743
BstACI GRCGYC 2 cut(s) 141, 507
BstBI TTCGAA 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 567, 922
BstDEI CTNAG 3 cut(s) 47, 770, 870
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 7 cut(s) 10, 393, 558, 780, 837, 880, 982
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 909
BstKTI GATC 5 cut(s) 304, 361, 776, 891, 970
BstMAI GTCTC 3 cut(s) 242, 612, 663
BstMBI GATC 5 cut(s) 301, 358, 773, 888, 967
BstMWI GCNNNNNNNGC 2 cut(s) 610, 689
BstNI CCWGG 4 cut(s) 122, 396, 481, 688
BstSCI CCNGG 5 cut(s) 53, 120, 394, 479, 686
BstSFI CTRYAG 2 cut(s) 201, 332
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 6 cut(s) 163, 600, 613, 667, 721, 724
BstV2I GAAGAC 2 cut(s) 85, 948
BstX2I RGATCY 2 cut(s) 358, 773
BstYI RGATCY 2 cut(s) 358, 773
BsuRI GGCC 5 cut(s) 125, 379, 464, 494, 686
BtgI CCRYGG 1 cut(s) 465
BtgZI GCGATG 2 cut(s) 267, 715
BtsCI GGATG 7 cut(s) 10, 393, 558, 780, 837, 880, 982
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
BveI ACCTGC 1 cut(s) 900
Cac8I GCNNGC 2 cut(s) 567, 922
CciI TCATGA 1 cut(s) 298
CfoI GCGC 1 cut(s) 909
Cfr10I RCCGGY 3 cut(s) 67, 379, 565
Cfr13I GGNCC 1 cut(s) 124
CseI GACGC 3 cut(s) 149, 299, 496
Csp6I GTAC 3 cut(s) 44, 410, 522
CviAII CATG 5 cut(s) 299, 456, 466, 644, 654
CviQI GTAC 3 cut(s) 44, 410, 522
DdeI CTNAG 3 cut(s) 47, 770, 870
DpnI GATC 5 cut(s) 303, 360, 775, 890, 969
DpnII GATC 5 cut(s) 301, 358, 773, 888, 967
DrdI GACNNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 1 cut(s) 655
EaeI YGGCCR 2 cut(s) 377, 492
Eam1104I CTCTTC 2 cut(s) 465, 743
EarI CTCTTC 2 cut(s) 465, 743
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 2 cut(s) 242, 663
Eco57I CTGAAG 1 cut(s) 960
EcoRI GAATTC 1 cut(s) 639
EcoRII CCWGG 4 cut(s) 120, 394, 479, 686
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 5 cut(s) 302, 459, 469, 647, 657
FaqI GGGAC 3 cut(s) 232, 466, 501
FatI CATG 5 cut(s) 298, 455, 465, 643, 653
FauI CCCGC 2 cut(s) 257, 570
Fnu4HI GCNGC 7 cut(s) 177, 602, 614, 681, 684, 735, 738
FokI GGATG 6 cut(s) 17, 400, 545, 767, 844, 887
Fsp4HI GCNGC 7 cut(s) 177, 602, 614, 681, 684, 735, 738
FspBI CTAG 3 cut(s) 74, 227, 305
GlaI GCGC 1 cut(s) 908
GluI GCNGC 7 cut(s) 177, 602, 614, 681, 684, 735, 738
GsaI CCCAGC 3 cut(s) 317, 488, 907
GsuI CTGGAG 1 cut(s) 463
HaeIII GGCC 5 cut(s) 125, 379, 464, 494, 686
HapII CCGG 5 cut(s) 54, 68, 87, 380, 566
HgaI GACGC 3 cut(s) 149, 299, 496
HhaI GCGC 1 cut(s) 909
Hin1I GRCGYC 2 cut(s) 141, 507
Hin1II CATG 5 cut(s) 302, 459, 469, 647, 657
Hin6I GCGC 1 cut(s) 907
HinP1I GCGC 1 cut(s) 907
HinfI GANTC 3 cut(s) 90, 370, 898
HpaII CCGG 5 cut(s) 54, 68, 87, 380, 566
Hpy188I TCNGA 2 cut(s) 773, 940
Hpy188III TCNNGA 3 cut(s) 28, 97, 299
Hpy99I CGWCG 3 cut(s) 143, 218, 968
HpyAV CCTTC 1 cut(s) 829
HpyCH4III ACNGT 3 cut(s) 161, 626, 947
HpyCH4V TGCA 2 cut(s) 653, 920
HpyF10VI GCNNNNNNNGC 2 cut(s) 610, 689
HpyF3I CTNAG 3 cut(s) 47, 770, 870
Hsp92I GRCGYC 2 cut(s) 141, 507
Hsp92II CATG 5 cut(s) 302, 459, 469, 647, 657
HspAI GCGC 1 cut(s) 907
KpnI GGTACC 1 cut(s) 525
KroI GCCGGC 1 cut(s) 565
KroNI GCCGGC 1 cut(s) 567
Kzo9I GATC 5 cut(s) 301, 358, 773, 888, 967
LmnI GCTCC 3 cut(s) 482, 677, 862
Lsp1109I GCAGC 6 cut(s) 163, 600, 613, 667, 721, 724
LweI GCATC 1 cut(s) 54
MaeI CTAG 3 cut(s) 74, 227, 305
MaeIII GTNAC 2 cut(s) 161, 646
MalI GATC 5 cut(s) 303, 360, 775, 890, 969
MboI GATC 5 cut(s) 301, 358, 773, 888, 967
MboII GAAGA 8 cut(s) 70, 73, 85, 206, 253, 482, 760, 953
MflI RGATCY 2 cut(s) 358, 773
MhlI GDGCHC 2 cut(s) 287, 479
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 1 cut(s) 639
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 808
MnlI CCTC 8 cut(s) 5, 146, 227, 330, 454, 822, 865, 971
Mox20I TGGCCA 1 cut(s) 494
MreI CGCCGGCG 1 cut(s) 565
MroNI GCCGGC 1 cut(s) 565
MscI TGGCCA 1 cut(s) 494
MseI TTAA 1 cut(s) 723
Msp20I TGGCCA 1 cut(s) 494
MspI CCGG 5 cut(s) 54, 68, 87, 380, 566
MspR9I CCNGG 5 cut(s) 55, 122, 396, 481, 688
Mva1269I GAATGC 1 cut(s) 922
MvaI CCWGG 4 cut(s) 122, 396, 481, 688
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 610, 689
NaeI GCCGGC 1 cut(s) 567
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 465
NdeII GATC 5 cut(s) 301, 358, 773, 888, 967
NgoMIV GCCGGC 1 cut(s) 565
NlaIII CATG 5 cut(s) 302, 459, 469, 647, 657
NlaIV GGNNCC 5 cut(s) 85, 190, 284, 523, 556
NmuCI GTSAC 2 cut(s) 161, 646
NspV TTCGAA 1 cut(s) 419
PagI TCATGA 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PctI GAATGC 1 cut(s) 922
PdiI GCCGGC 1 cut(s) 567
PfeI GAWTC 2 cut(s) 370, 898
PflMI CCANNNNNTGG 1 cut(s) 279
PfoI TCCNGGA 1 cut(s) 53
PkrI GCNGC 7 cut(s) 178, 603, 615, 682, 685, 736, 739
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp6I CCWGG 4 cut(s) 120, 394, 479, 686
PspFI CCCAGC 3 cut(s) 313, 484, 903
PspGI CCWGG 4 cut(s) 120, 394, 479, 686
PspN4I GGNNCC 5 cut(s) 85, 190, 284, 523, 556
PspPI GGNCC 1 cut(s) 124
PsuI RGATCY 2 cut(s) 358, 773
RsaI GTAC 3 cut(s) 45, 411, 523
RsaNI GTAC 3 cut(s) 44, 410, 522
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 7 cut(s) 177, 602, 614, 681, 684, 735, 738
Sau3AI GATC 5 cut(s) 301, 358, 773, 888, 967
Sau96I GGNCC 1 cut(s) 124
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 5 cut(s) 55, 122, 396, 481, 688
SduI GDGCHC 2 cut(s) 287, 479
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 2 cut(s) 201, 332
SfuI TTCGAA 1 cut(s) 419
SgrAI CRCCGGYG 1 cut(s) 565
SmlI CTYRAG 1 cut(s) 808
SmoI CTYRAG 1 cut(s) 808
Sse9I AATT 1 cut(s) 639
SsiI CCGC 4 cut(s) 250, 563, 569, 683
SspI AATATT 1 cut(s) 852
SspMI CTAG 3 cut(s) 74, 227, 305
StyD4I CCNGG 5 cut(s) 53, 120, 394, 479, 686
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 3 cut(s) 161, 626, 947
TaqI TCGA 5 cut(s) 138, 147, 326, 419, 963
TasI AATT 1 cut(s) 639
TauI GCSGC 1 cut(s) 686
TfiI GAWTC 2 cut(s) 370, 898
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 161, 646
TseI GCWGC 6 cut(s) 176, 601, 613, 680, 734, 737
Tsp45I GTSAC 2 cut(s) 161, 646
TspDTI ATGAA 8 cut(s) 253, 362, 404, 602, 632, 848, 891, 896
TspGWI ACGGA 1 cut(s) 567
TspRI CASTG 1 cut(s) 178
Van91I CCANNNNNTGG 1 cut(s) 279
XapI RAATTY 1 cut(s) 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XspI CTAG 3 cut(s) 74, 227, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.