Rorug06G0408500

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0008137
Physical Location & Seq
Forward (+)
55142514 .. 55145516
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0408500.1

Sequence Viewer

Length: 963 bp
ATGGAGTACTCCAAAACCACCGATAAGCTAACCGAGTTTTTGGACTCCGGGATTTACCGGTTCGAAGATTCCAACGCCGTTTTCATCGACCCGGTTCGCGTGCTCAACCGCTCCTACACCCGGTTTAGGGTTTCACCTTCCGCTTACTACTGTCGCCCATTCGACTCCACTTGCCCACCGGAGCCTAGCGTCGCTTCGAATTCCAGGAAGCGAAAGCGGAAGGAGAAGAAGAAGAAGAAGAAGCCCCGGGCTCTGAACGAAAGAGAACAAGTCGCCGATCAACGCCACCAGGAAGTGAGACCTTTCTTACTGAAGGCACATGAATCTTTGATCCGAACAAGTGAGGTGTTAGAGGTTATGAGCAATTTGAGGGGTTGTTTGGGTCCTGAAACTTCCTCTCCAGGTGTTAAACAGTCATTTGTTGAACTCGCACAGGTCTGGCAGGCCCCTCTTTACGAGATTACTCTAAACTTCCATACAAATTACAAAGAAGGGGAAGATGGAGGCTCCCTTGCTACGCAAGGCTGTGAACAATGTGTTCTCCCTGTGTTTAACAACTTGGTCGTTAATGAGAGCAGTAATGATGTGGAGGCTGAAGTTTTGACCAGTCGATATATTTTGCCTCCGAAGAGTTCCTTCTACATGTCAGATATGGGGCAGATTCACAATCTAATTCCTGCTGAGTCTGATTTTGGCTTCAGTGTTATAGTTGTTGATCCACCATGGGAAAATGGCAGTGCTCGGCAGAAGTCGAGGTACAAAACTTTGCCCAACCGATATTTCTTATCCATTCCGATCAAGCAACTTTGTCACACAGATGGAGCATTTGTCGCCTTATGGATAACAAATAGGGAGAAGTTGCGTGATTTTGTCGAGAAAGAGCTGTTTCCTGCTTGGGGAGTCACACATGTTGCTACTTTTTTCTGGTTGAAGGTTCTCATGTCTGTTTCTCTTTTTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

320

Amino Acids

36.69

Weight (kDa)

8.62

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MT-A70 PF05063 233 - 312 9.9e-18 MT-A70
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 111
AccII CGCG 1 cut(s) 99
AciI CCGC 3 cut(s) 109, 141, 217
AclWI GGATC 2 cut(s) 325, 710
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 3 cut(s) 332, 615, 682
AfaI GTAC 2 cut(s) 8, 758
AfiI CCNNNNNNNGG 4 cut(s) 120, 126, 127, 896
AflIII ACRYGT 2 cut(s) 642, 907
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 2 cut(s) 425, 931
AjnI CCWGG 3 cut(s) 203, 288, 400
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 764, 796
AluBI AGCT 2 cut(s) 28, 883
AluI AGCT 2 cut(s) 28, 883
Alw21I GWGCWC 2 cut(s) 105, 742
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 325, 710
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 199
AsiGI ACCGGT 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 383, 445
AsuC2I CCSGG 5 cut(s) 49, 92, 121, 247, 248
AsuHPI GGTGA 1 cut(s) 126
AsuII TTCGAA 2 cut(s) 63, 197
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 1 cut(s) 383
BanII GRGCYC 1 cut(s) 253
BarI GAAGNNNNNNTAC 2 cut(s) 740, 772
Bbv12I GWGCWC 2 cut(s) 105, 742
BccI CCATC 2 cut(s) 494, 812
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 3 cut(s) 205, 290, 402
BcnI CCSGG 5 cut(s) 49, 92, 121, 247, 248
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 1 cut(s) 186
BmcAI AGTACT 1 cut(s) 8
Bme1390I CCNGG 8 cut(s) 49, 92, 121, 205, 247, 248, 290, 402
Bme18I GGWCC 1 cut(s) 383
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 2 cut(s) 383, 445
BmiI GGNNCC 4 cut(s) 183, 384, 447, 508
BmrFI CCNGG 8 cut(s) 49, 92, 121, 205, 247, 248, 290, 402
BpmI CTGGAG 1 cut(s) 384
Bpu14I TTCGAA 2 cut(s) 63, 197
BpuMI CCSGG 5 cut(s) 49, 92, 121, 247, 248
BsaI GGTCTC 1 cut(s) 292
BsaJI CCNNGG 3 cut(s) 245, 246, 722
BsaWI WCCGGW 2 cut(s) 57, 178
BsaXI ACNNNNNCTCC 4 cut(s) 382, 412, 813, 843
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 126, 127, 896
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 1 cut(s) 606
BseBI CCWGG 3 cut(s) 205, 290, 402
BseDI CCNNGG 3 cut(s) 245, 246, 722
BseLI CCNNNNNNNGG 4 cut(s) 120, 126, 127, 896
BseMII CTCAG 1 cut(s) 672
BseNI ACTGG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 446
BshTI ACCGGT 1 cut(s) 57
BsiHKAI GWGCWC 2 cut(s) 105, 742
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 6 cut(s) 48, 58, 92, 121, 179, 247
BslI CCNNNNNNNGG 4 cut(s) 120, 126, 127, 896
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 446
Bso31I GGTCTC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 246
Bsp119I TTCGAA 2 cut(s) 63, 197
Bsp1286I GDGCHC 3 cut(s) 105, 253, 742
Bsp143I GATC 4 cut(s) 277, 330, 715, 795
Bsp19I CCATGG 1 cut(s) 722
BspACI CCGC 3 cut(s) 109, 141, 217
BspANI GGCC 1 cut(s) 446
BspCNI CTCAG 1 cut(s) 673
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 4 cut(s) 183, 384, 447, 508
BspPI GGATC 2 cut(s) 325, 710
BspT104I TTCGAA 2 cut(s) 63, 197
BspTNI GGTCTC 1 cut(s) 292
BsrBI CCGCTC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 245, 246, 722
BssMI GATC 4 cut(s) 277, 330, 715, 795
BssT1I CCWWGG 1 cut(s) 722
Bst2UI CCWGG 3 cut(s) 205, 290, 402
Bst4CI ACNGT 2 cut(s) 152, 414
Bst6I CTCTTC 1 cut(s) 623
BstBI TTCGAA 2 cut(s) 63, 197
BstC8I GCNNGC 2 cut(s) 101, 444
BstDEI CTNAG 1 cut(s) 681
BstDSI CCRYGG 1 cut(s) 722
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 4 cut(s) 280, 333, 718, 798
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 4 cut(s) 277, 330, 715, 795
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 3 cut(s) 205, 290, 402
BstNSI RCATGY 2 cut(s) 646, 911
BstSCI CCNGG 8 cut(s) 47, 90, 119, 203, 245, 246, 288, 400
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 446
BtgI CCRYGG 1 cut(s) 722
BtsI GCAGTG 1 cut(s) 742
BtsIMutI CAGTG 2 cut(s) 706, 742
Cac8I GCNNGC 2 cut(s) 101, 444
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 2 cut(s) 383, 445
Cfr9I CCCGGG 1 cut(s) 246
CseI GACGC 1 cut(s) 178
Csp6I GTAC 2 cut(s) 7, 757
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 5 cut(s) 320, 643, 723, 908, 940
CviQI GTAC 2 cut(s) 7, 757
DdeI CTNAG 1 cut(s) 681
DpnI GATC 4 cut(s) 279, 332, 717, 797
DpnII GATC 4 cut(s) 277, 330, 715, 795
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 722
Eco24I GRGCYC 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 383
Eco57I CTGAAG 3 cut(s) 332, 615, 682
Eco88I CYCGRG 1 cut(s) 246
EcoO109I RGGNCCY 2 cut(s) 383, 445
EcoRI GAATTC 1 cut(s) 199
EcoRII CCWGG 3 cut(s) 203, 288, 400
EcoT14I CCWWGG 1 cut(s) 722
EcoT38I GRGCYC 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 722
FaeI CATG 5 cut(s) 323, 646, 726, 911, 943
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 5 cut(s) 319, 642, 722, 907, 939
FriOI GRGCYC 1 cut(s) 253
FspBI CTAG 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 384
HaeIII GGCC 1 cut(s) 446
HapII CCGG 6 cut(s) 48, 58, 92, 121, 179, 247
HgaI GACGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 323, 646, 726, 911, 943
HinfI GANTC 7 cut(s) 44, 68, 164, 323, 661, 683, 900
HpaII CCGG 6 cut(s) 48, 58, 92, 121, 179, 247
HphI GGTGA 1 cut(s) 126
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 6 cut(s) 255, 335, 627, 649, 688, 795
Hpy188III TCNNGA 2 cut(s) 386, 874
Hpy8I GTNNAC 1 cut(s) 530
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 6 cut(s) 147, 214, 307, 485, 646, 925
HpyCH4III ACNGT 2 cut(s) 152, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 1 cut(s) 681
Hsp92II CATG 5 cut(s) 323, 646, 726, 911, 943
Kzo9I GATC 4 cut(s) 277, 330, 715, 795
LmnI GCTCC 4 cut(s) 116, 181, 512, 821
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 809, 901
MalI GATC 4 cut(s) 279, 332, 717, 797
MbiI CCGCTC 1 cut(s) 111
MboI GATC 4 cut(s) 277, 330, 715, 795
MboII GAAGA 8 cut(s) 77, 238, 241, 244, 247, 250, 509, 640
MhlI GDGCHC 3 cut(s) 105, 253, 742
MluCI AATT 4 cut(s) 199, 364, 481, 672
MlyI GAGTC 4 cut(s) 38, 158, 692, 909
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 9 cut(s) 337, 346, 363, 406, 459, 497, 583, 633, 747
MseI TTAA 3 cut(s) 408, 552, 567
MslI CAYNNNNRTG 1 cut(s) 816
MspI CCGG 6 cut(s) 48, 58, 92, 121, 179, 247
MspR9I CCNGG 8 cut(s) 49, 92, 121, 205, 247, 248, 290, 402
MvaI CCWGG 3 cut(s) 205, 290, 402
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 830
NciI CCSGG 5 cut(s) 49, 92, 121, 247, 248
NcoI CCATGG 1 cut(s) 722
NdeII GATC 4 cut(s) 277, 330, 715, 795
NlaIII CATG 5 cut(s) 323, 646, 726, 911, 943
NlaIV GGNNCC 4 cut(s) 183, 384, 447, 508
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 2 cut(s) 809, 901
NspI RCATGY 2 cut(s) 646, 911
NspV TTCGAA 2 cut(s) 63, 197
PciI ACATGT 2 cut(s) 642, 907
PfeI GAWTC 3 cut(s) 68, 323, 661
PfoI TCCNGGA 2 cut(s) 47, 203
PinAI ACCGGT 1 cut(s) 57
PleI GAGTC 4 cut(s) 38, 158, 691, 908
PpsI GAGTC 4 cut(s) 38, 158, 691, 908
PpuMI RGGWCCY 1 cut(s) 383
PscI ACATGT 2 cut(s) 642, 907
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 203, 288, 400
PspGI CCWGG 3 cut(s) 203, 288, 400
PspN4I GGNNCC 4 cut(s) 183, 384, 447, 508
PspPI GGNCC 2 cut(s) 383, 445
PspPPI RGGWCCY 1 cut(s) 383
RsaI GTAC 2 cut(s) 8, 758
RsaNI GTAC 2 cut(s) 7, 757
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 3 cut(s) 408, 552, 567
Sau3AI GATC 4 cut(s) 277, 330, 715, 795
Sau96I GGNCC 2 cut(s) 383, 445
ScaI AGTACT 1 cut(s) 8
SchI GAGTC 4 cut(s) 38, 158, 692, 909
ScrFI CCNGG 8 cut(s) 49, 92, 121, 205, 247, 248, 290, 402
SduI GDGCHC 3 cut(s) 105, 253, 742
SfuI TTCGAA 2 cut(s) 63, 197
SinI GGWCC 1 cut(s) 383
SmaI CCCGGG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 4 cut(s) 199, 364, 481, 672
SsiI CCGC 3 cut(s) 109, 141, 217
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 8 cut(s) 47, 90, 119, 203, 245, 246, 288, 400
StyI CCWWGG 1 cut(s) 722
TaaI ACNGT 2 cut(s) 152, 414
TaqI TCGA 7 cut(s) 63, 87, 162, 197, 610, 752, 873
TasI AATT 4 cut(s) 199, 364, 481, 672
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 3 cut(s) 68, 323, 661
Tru1I TTAA 3 cut(s) 408, 552, 567
Tru9I TTAA 3 cut(s) 408, 552, 567
TscAI CASTG 2 cut(s) 706, 742
TseFI GTSAC 2 cut(s) 809, 901
Tsp45I GTSAC 2 cut(s) 809, 901
TspDTI ATGAA 2 cut(s) 73, 336
TspMI CCCGGG 1 cut(s) 246
TspRI CASTG 2 cut(s) 706, 742
VpaK11BI GGWCC 1 cut(s) 383
XapI RAATTY 1 cut(s) 199
XceI RCATGY 2 cut(s) 646, 911
XmaI CCCGGG 1 cut(s) 246
XspI CTAG 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.