Belongs to the Casparian strip membrane proteins (CASP) family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g17860 FvH4_5g17870 |
| malus_domestica | MD14G1241700.v1.1 |
| prunus_persica | Prupe.5G239200_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr7g0177721 RchiOBHm_Chr7g0177731 |
| rosa_laevigata | RLG00000005510 RLG00000005511 |
| rosa_multiflora | Rmu_co8111538.1_g000001 Rmu_co8352477.1_g000001 Rmu_sc0004786.1_g000004 |
| rosa_roxburghii | Rroxscaffold_3G00275610 Rroxscaffold_3G00275620 |
| rosa_rugosa | Rorug06G0408500 Rorug06G0408600.1 |
| rosa_samantha | Rh7AG008300 Rh7AG008400 Rh7BG008300 Rh7BG008400 Rh7CG008700 Rh7CG008800 Rh7DG008400 Rh7DG008500 |
| rosa_wichuraiana | Rw7G000700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 273 |
| AccB1I | GGYRCC | 1 cut(s) | 273 |
| AccBSI | CCGCTC | 1 cut(s) | 77 |
| AciI | CCGC | 1 cut(s) | 77 |
| AcsI | RAATTY | 1 cut(s) | 195 |
| AfaI | GTAC | 1 cut(s) | 275 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 122 |
| AgeI | ACCGGT | 1 cut(s) | 276 |
| AgsI | TTSAA | 2 cut(s) | 86, 234 |
| AluBI | AGCT | 3 cut(s) | 39, 65, 212 |
| AluI | AGCT | 3 cut(s) | 39, 65, 212 |
| AoxI | GGCC | 1 cut(s) | 124 |
| ApoI | RAATTY | 1 cut(s) | 195 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 84, 116 |
| AsiGI | ACCGGT | 1 cut(s) | 276 |
| Asp718I | GGTACC | 1 cut(s) | 273 |
| BanI | GGYRCC | 1 cut(s) | 273 |
| BmiI | GGNNCC | 1 cut(s) | 275 |
| BmrI | ACTGGG | 1 cut(s) | 255 |
| BmuI | ACTGGG | 1 cut(s) | 255 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 72, 104 |
| BpuEI | CTTGAG | 1 cut(s) | 157 |
| BsaWI | WCCGGW | 2 cut(s) | 191, 276 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 66, 96 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 122 |
| Bse118I | RCCGGY | 1 cut(s) | 276 |
| Bse1I | ACTGG | 1 cut(s) | 261 |
| Bse3DI | GCAATG | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 122 |
| BseMI | GCAATG | 1 cut(s) | 246 |
| BseNI | ACTGG | 1 cut(s) | 261 |
| BshFI | GGCC | 1 cut(s) | 126 |
| BshNI | GGYRCC | 1 cut(s) | 273 |
| BshTI | ACCGGT | 1 cut(s) | 276 |
| BsiSI | CCGG | 2 cut(s) | 192, 277 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 122 |
| BsnI | GGCC | 1 cut(s) | 126 |
| BspACI | CCGC | 1 cut(s) | 77 |
| BspANI | GGCC | 1 cut(s) | 126 |
| BspLI | GGNNCC | 1 cut(s) | 275 |
| BspT107I | GGYRCC | 1 cut(s) | 273 |
| BsrBI | CCGCTC | 1 cut(s) | 77 |
| BsrDI | GCAATG | 1 cut(s) | 246 |
| BsrFI | RCCGGY | 1 cut(s) | 276 |
| BsrI | ACTGG | 1 cut(s) | 261 |
| BssAI | RCCGGY | 1 cut(s) | 276 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 62, 185 |
| BsuRI | GGCC | 1 cut(s) | 126 |
| Cfr10I | RCCGGY | 1 cut(s) | 276 |
| Csp6I | GTAC | 1 cut(s) | 274 |
| CspAI | ACCGGT | 1 cut(s) | 276 |
| CviAII | CATG | 1 cut(s) | 220 |
| CviJI | RGCY | 7 cut(s) | 39, 56, 65, 126, 179, 212, 224 |
| CviKI_1 | RGCY | 7 cut(s) | 39, 56, 65, 126, 179, 212, 224 |
| CviQI | GTAC | 1 cut(s) | 274 |
| EcoRI | GAATTC | 1 cut(s) | 195 |
| FaeI | CATG | 1 cut(s) | 223 |
| FaiI | YATR | 3 cut(s) | 21, 171, 221 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 96, 128 |
| FatI | CATG | 1 cut(s) | 219 |
| FauI | CCCGC | 1 cut(s) | 70 |
| HaeIII | GGCC | 1 cut(s) | 126 |
| HapII | CCGG | 2 cut(s) | 192, 277 |
| Hin1II | CATG | 1 cut(s) | 223 |
| HinfI | GANTC | 1 cut(s) | 43 |
| HpaII | CCGG | 2 cut(s) | 192, 277 |
| HpyAV | CCTTC | 1 cut(s) | 169 |
| HpyCH4V | TGCA | 1 cut(s) | 219 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 62, 185 |
| Hsp92II | CATG | 1 cut(s) | 223 |
| KpnI | GGTACC | 1 cut(s) | 277 |
| LmnI | GCTCC | 3 cut(s) | 62, 74, 209 |
| LpnPI | CCDG | 4 cut(s) | 18, 51, 205, 274 |
| MaeIII | GTNAC | 1 cut(s) | 108 |
| MbiI | CCGCTC | 1 cut(s) | 77 |
| MboII | GAAGA | 3 cut(s) | 42, 166, 259 |
| MluCI | AATT | 1 cut(s) | 195 |
| MmeI | TCCRAC | 1 cut(s) | 187 |
| MnlI | CCTC | 3 cut(s) | 126, 132, 248 |
| MslI | CAYNNNNRTG | 1 cut(s) | 224 |
| MspI | CCGG | 2 cut(s) | 192, 277 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 62, 185 |
| NlaIII | CATG | 1 cut(s) | 223 |
| NlaIV | GGNNCC | 1 cut(s) | 275 |
| NmeAIII | GCCGAG | 1 cut(s) | 102 |
| PfeI | GAWTC | 1 cut(s) | 43 |
| PinAI | ACCGGT | 1 cut(s) | 276 |
| PspN4I | GGNNCC | 1 cut(s) | 275 |
| RsaI | GTAC | 1 cut(s) | 275 |
| RsaNI | GTAC | 1 cut(s) | 274 |
| RseI | CAYNNNNRTG | 1 cut(s) | 224 |
| SetI | ASST | 4 cut(s) | 33, 41, 67, 214 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 224 |
| SmlI | CTYRAG | 1 cut(s) | 136 |
| SmoI | CTYRAG | 1 cut(s) | 136 |
| Sse9I | AATT | 1 cut(s) | 195 |
| SsiI | CCGC | 1 cut(s) | 77 |
| TaqI | TCGA | 2 cut(s) | 102, 253 |
| TasI | AATT | 1 cut(s) | 195 |
| TfiI | GAWTC | 1 cut(s) | 43 |
| XapI | RAATTY | 1 cut(s) | 195 |