FvH4_5g17870

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008137
Physical Location & Seq
Reverse (-)
10249423 .. 10250083
661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17870.t1

Sequence Viewer

Length: 576 bp
ATGGCTAAAGCTATTCCTGCCCTAGTTCTAGTATTCAGGATCTTTACCCTTGTGGCCTGTGTTGTTTCTGGGCTGCTTCTCGCTCTCGACAACTTTACAGATGATGGTGAAAATTTTCATTTTTATGATTTCATTTCATTCAGGTATGTGCTTTGTGCAGCAGCAATAGGAGCAGCATACAGCCTACTACAGCTACCATTTAACATATACTATACCTGCACCAATAAGCGCTTGATCCGAAACGGATGCATGCCGAACTTTGATTTCTATTCCGACAAGGTAGTGACCCTGGTTCTAGCTTCCGGTGTCGGAGCTGGTTTCGCAGCGGCATTCGAGCTCAAAAAGGCTTTCAAATTGTTACTTGCTCTGATAGCGTTCGCGCAACTAGCAGCTCAGTCAGCTGACTATGATGTCGACAATACCTCTACTTCGGTTCAAGATCCATCGAAGTACAATCACTTCTTTGACATGGCAATTATTTCCAGCGGGATTCTCTTGGTTGGAGCTGTTTGCACGGCCGTGGTTTCGATTCTCACTTCCATCACTCGGACTTCAAATTCGGGTTTCTTTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

192

Amino Acids

20.66

Weight (kDa)

6.03

Isoelectric Point (pI)

31.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 6 - 114 7.3e-16 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 380
AciI CCGC 2 cut(s) 326, 486
AclWI GGATC 3 cut(s) 47, 229, 434
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 2 cut(s) 112, 556
AfaI GTAC 1 cut(s) 452
AfeI AGCGCT 1 cut(s) 230
AfiI CCNNNNNNNGG 1 cut(s) 546
AgsI TTSAA 3 cut(s) 352, 437, 555
AjnI CCWGG 1 cut(s) 288
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 8 cut(s) 11, 193, 299, 314, 337, 392, 401, 506
AluI AGCT 8 cut(s) 11, 193, 299, 314, 337, 392, 401, 506
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 3 cut(s) 47, 229, 434
Aor51HI AGCGCT 1 cut(s) 230
AoxI GGCC 2 cut(s) 54, 516
ApeKI GCWGC 6 cut(s) 73, 158, 161, 173, 323, 389
ApoI RAATTY 2 cut(s) 112, 556
ArsI GACNNNNNNTTYG 2 cut(s) 541, 573
Asp700I GAANNNNTTC 1 cut(s) 114
AspLEI GCGC 2 cut(s) 231, 382
AsuHPI GGTGA 1 cut(s) 119
BanII GRGCYC 1 cut(s) 339
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 6 cut(s) 60, 170, 173, 185, 335, 401
BccI CCATC 3 cut(s) 98, 451, 548
BceAI ACGGC 2 cut(s) 503, 531
BcgI CGANNNNNNTGC 2 cut(s) 228, 262
BciT130I CCWGG 1 cut(s) 290
BfaI CTAG 4 cut(s) 23, 29, 296, 386
BfmI CTRYAG 1 cut(s) 188
BfoI RGCGCY 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 224
BisI GCNGC 7 cut(s) 74, 159, 162, 174, 324, 327, 390
BlsI GCNGC 7 cut(s) 75, 160, 163, 175, 325, 328, 391
Bme1390I CCNGG 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 236
BsaJI CCNNGG 2 cut(s) 288, 519
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 546
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 2 cut(s) 288, 519
BseGI GGATG 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 546
BseMII CTCAG 1 cut(s) 407
BseX3I CGGCCG 1 cut(s) 516
BseXI GCAGC 6 cut(s) 60, 170, 173, 185, 335, 401
BsgI GTGCAG 2 cut(s) 177, 202
Bsh1236I CGCG 1 cut(s) 380
Bsh1285I CGRYCG 1 cut(s) 519
BshFI GGCC 2 cut(s) 56, 518
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 546
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 2 cut(s) 56, 518
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 3 cut(s) 39, 234, 439
BspACI CCGC 2 cut(s) 326, 486
BspANI GGCC 2 cut(s) 56, 518
BspCNI CTCAG 1 cut(s) 406
BspFNI CGCG 1 cut(s) 380
BspMI ACCTGC 1 cut(s) 224
BspPI GGATC 3 cut(s) 47, 229, 434
BssECI CCNNGG 2 cut(s) 288, 519
BssMI GATC 3 cut(s) 39, 234, 439
Bst2UI CCWGG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 393
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 251
BstFNI CGCG 1 cut(s) 380
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 2 cut(s) 231, 382
BstKTI GATC 3 cut(s) 42, 237, 442
BstMBI GATC 3 cut(s) 39, 234, 439
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 6 cut(s) 17, 170, 320, 371, 386, 398
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 188
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 6 cut(s) 60, 170, 173, 185, 335, 401
BstX2I RGATCY 2 cut(s) 39, 439
BstYI RGATCY 2 cut(s) 39, 439
BstZI CGGCCG 1 cut(s) 516
BsuRI GGCC 2 cut(s) 56, 518
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 1 cut(s) 251
BveI ACCTGC 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 251
CfoI GCGC 2 cut(s) 231, 382
Csp6I GTAC 1 cut(s) 451
CviAII CATG 2 cut(s) 250, 469
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 393
DpnI GATC 3 cut(s) 41, 236, 441
DpnII GATC 3 cut(s) 39, 234, 439
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 516
EagI CGGCCG 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 337
EclXI CGGCCG 1 cut(s) 516
Eco24I GRGCYC 1 cut(s) 339
Eco47III AGCGCT 1 cut(s) 230
Eco52I CGGCCG 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 337
EcoICRI GAGCTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 2 cut(s) 253, 472
FaiI YATR 9 cut(s) 126, 147, 178, 206, 208, 213, 251, 408, 470
FatI CATG 2 cut(s) 249, 468
FauI CCCGC 1 cut(s) 479
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 7 cut(s) 74, 159, 162, 174, 324, 327, 390
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 7 cut(s) 74, 159, 162, 174, 324, 327, 390
FspBI CTAG 4 cut(s) 23, 29, 296, 386
GlaI GCGC 2 cut(s) 230, 381
GluI GCNGC 7 cut(s) 74, 159, 162, 174, 324, 327, 390
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 2 cut(s) 56, 518
HapII CCGG 1 cut(s) 303
HhaI GCGC 2 cut(s) 231, 382
Hin1II CATG 2 cut(s) 253, 472
Hin6I GCGC 2 cut(s) 229, 380
HinP1I GCGC 2 cut(s) 229, 380
HincII GTYRAC 1 cut(s) 415
HindII GTYRAC 1 cut(s) 415
HinfI GANTC 2 cut(s) 490, 529
HpaII CCGG 1 cut(s) 303
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 5 cut(s) 239, 274, 311, 369, 549
Hpy188III TCNNGA 3 cut(s) 37, 86, 437
Hpy8I GTNNAC 1 cut(s) 415
HpyCH4V TGCA 4 cut(s) 158, 219, 249, 513
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 170, 320, 371, 386, 398
HpyF3I CTNAG 1 cut(s) 393
Hsp92II CATG 2 cut(s) 253, 472
HspAI GCGC 2 cut(s) 229, 380
Kzo9I GATC 3 cut(s) 39, 234, 439
LmnI GCTCC 3 cut(s) 170, 311, 503
Lsp1109I GCAGC 6 cut(s) 60, 170, 173, 185, 335, 401
LweI GCATC 1 cut(s) 236
MaeI CTAG 4 cut(s) 23, 29, 296, 386
MaeIII GTNAC 2 cut(s) 283, 357
MalI GATC 3 cut(s) 41, 236, 441
MboI GATC 3 cut(s) 39, 234, 439
MflI RGATCY 2 cut(s) 39, 439
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 4 cut(s) 112, 353, 474, 556
MmeI TCCRAC 3 cut(s) 289, 297, 481
MnlI CCTC 1 cut(s) 433
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 114
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 2 cut(s) 123, 518
MspA1I CMGCKG 3 cut(s) 326, 401, 486
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 290
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 6 cut(s) 17, 170, 320, 371, 386, 398
NdeII GATC 3 cut(s) 39, 234, 439
NlaIII CATG 2 cut(s) 253, 472
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 518
PaeI GCATGC 1 cut(s) 253
PctI GAATGC 1 cut(s) 329
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 490, 529
PkrI GCNGC 7 cut(s) 75, 160, 163, 175, 325, 328, 391
Psp124BI GAGCTC 1 cut(s) 339
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PsuI RGATCY 2 cut(s) 39, 439
PvuII CAGCTG 1 cut(s) 401
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
RseI CAYNNNNRTG 2 cut(s) 123, 518
SacI GAGCTC 1 cut(s) 339
SalI GTCGAC 1 cut(s) 413
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 7 cut(s) 74, 159, 162, 174, 324, 327, 390
Sau3AI GATC 3 cut(s) 39, 234, 439
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 1 cut(s) 236
SfcI CTRYAG 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 123, 518
SphI GCATGC 1 cut(s) 253
Sse9I AATT 4 cut(s) 112, 353, 474, 556
SsiI CCGC 2 cut(s) 326, 486
SspMI CTAG 4 cut(s) 23, 29, 296, 386
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 288
TaqI TCGA 5 cut(s) 87, 333, 414, 446, 527
TasI AATT 4 cut(s) 112, 353, 474, 556
TatI WGTACW 1 cut(s) 450
TauI GCSGC 1 cut(s) 329
TfiI GAWTC 2 cut(s) 490, 529
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 6 cut(s) 73, 158, 161, 173, 323, 389
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 107, 121, 126
TspGWI ACGGA 1 cut(s) 258
XapI RAATTY 2 cut(s) 112, 556
XceI RCATGY 1 cut(s) 253
XmiI GTMKAC 1 cut(s) 414
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 4 cut(s) 23, 29, 296, 386
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.