Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008137

Physical Location & Seq

Genomic Coordinates Reverse (-)

18058388 .. 18059194

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G239200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCTTCTAAAGCTATTCCTTCCTCAATTCTTGTGTTGAGGATCGTCACTCTTTTAGCCTTAGTTGCTTCAGTTGTCGTGCTGGTTACCGACCACTTCACACTTCAAGATGGCACCCAACAGCATTTTCAGGATATTCATGCATACAGGTTCGTGCTTGCTACAGCAGCAATTGGAGCAGCTTACACGTTAATACAGTTACCTTTTGATATATACTATGCCTGCGCCCAAAAGAGGTTGATACGCCACGGATGCATGCCTGAGTTTGATTTCTATGCAGACAAGTTGGTTAGCTTGGTTCTAGCTTCGGGCGTGGGTGCTGGTTTTGGTGTGGGTTTTGAGTTCAAAAGAGTCCTCAATGATTTATTTCTACTGCTTTTAGCACTAGGCGAGGATCCTGTAAGTTTGGATGAAGAACAATCCAAGGATAATGCTTTCTTTAACAGGGCAAATATTGCTACCGGAGTTTTGTTGGTGGGAGCCATTTGCATGGCTGTGATTTCAGTGCTTTCCTCCATCAATCGAACTTCAAATAGAGGTTTCTTCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

184

Amino Acids

19.86

Weight (kDa)

6.04

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008137)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17860 FvH4_5g17870
malus_domestica	MD14G1241700.v1.1
prunus_persica	Prupe.5G239200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177721 RchiOBHm_Chr7g0177731
rosa_laevigata	RLG00000005510 RLG00000005511
rosa_multiflora	Rmu_co8111538.1_g000001 Rmu_co8352477.1_g000001 Rmu_sc0004786.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275610 Rroxscaffold_3G00275620
rosa_rugosa	Rorug06G0408500 Rorug06G0408600.1
rosa_samantha	Rh7AG008300 Rh7AG008400 Rh7BG008300 Rh7BG008400 Rh7CG008700 Rh7CG008800 Rh7DG008400 Rh7DG008500
rosa_wichuraiana	Rw7G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AclWI	GGATC	3 cut(s)	50, 389, 402
AcuI	CTGAAG	1 cut(s)	54
AfiI	CCNNNNNNNGG	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	3 cut(s)	107, 346, 531
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	4 cut(s)	14, 182, 294, 305
AluI	AGCT	4 cut(s)	14, 182, 294, 305
AlwI	GGATC	3 cut(s)	50, 389, 402
ApeKI	GCWGC	2 cut(s)	167, 179
AspLEI	GCGC	1 cut(s)	227
BamHI	GGATCC	1 cut(s)	394
BanI	GGYRCC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	179, 191
BccI	CCATC	2 cut(s)	104, 524
BfaI	CTAG	2 cut(s)	302, 386
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	168, 180
BlsI	GCNGC	2 cut(s)	169, 181
BmiI	GGNNCC	3 cut(s)	115, 396, 481
BmsI	GCATC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	247, 423
BsaWI	WCCGGW	1 cut(s)	461
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	247, 423
BseGI	GGATG	2 cut(s)	257, 415
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	179, 191
BshNI	GGYRCC	1 cut(s)	113
BsiSI	CCGG	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	42, 394
BspCNI	CTCAG	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	115, 396, 481
BspPI	GGATC	3 cut(s)	50, 389, 402
BspT107I	GGYRCC	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	247, 423
BssMI	GATC	2 cut(s)	42, 394
BssT1I	CCWWGG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	198
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	3 cut(s)	159, 223, 257
BstDEI	CTNAG	2 cut(s)	61, 261
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	85
BstF5I	GGATG	2 cut(s)	257, 415
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	45, 397
BstMBI	GATC	2 cut(s)	42, 394
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 65, 167, 176, 252, 455
BstNSI	RCATGY	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	179, 191
BstX2I	RGATCY	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	394
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	257, 415
BtsIMutI	CAGTG	1 cut(s)	510
Cac8I	GCNNGC	3 cut(s)	159, 223, 257
CfoI	GCGC	1 cut(s)	227
CviAII	CATG	3 cut(s)	140, 256, 490
CviJI	RGCY	8 cut(s)	5, 14, 59, 182, 294, 305, 482, 494
CviKI_1	RGCY	8 cut(s)	5, 14, 59, 182, 294, 305, 482, 494
DdeI	CTNAG	2 cut(s)	61, 261
DpnI	GATC	2 cut(s)	44, 396
DpnII	GATC	2 cut(s)	42, 394
Eco130I	CCWWGG	1 cut(s)	423
Eco57I	CTGAAG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	423
EcoT22I	ATGCAT	2 cut(s)	145, 257
ErhI	CCWWGG	1 cut(s)	423
FaeI	CATG	3 cut(s)	143, 259, 493
FaiI	YATR	8 cut(s)	141, 145, 212, 214, 219, 257, 276, 491
FatI	CATG	3 cut(s)	139, 255, 489
Fnu4HI	GCNGC	2 cut(s)	168, 180
FokI	GGATG	2 cut(s)	264, 422
Fsp4HI	GCNGC	2 cut(s)	168, 180
FspBI	CTAG	2 cut(s)	302, 386
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	2 cut(s)	168, 180
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	3 cut(s)	143, 259, 493
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	1 cut(s)	462
Hpy188III	TCNNGA	2 cut(s)	107, 131
HpyAV	CCTTC	1 cut(s)	30
HpyCH4III	ACNGT	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	188
HpyCH4V	TGCA	4 cut(s)	143, 255, 278, 489
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 65, 167, 176, 252, 455
HpyF3I	CTNAG	2 cut(s)	61, 261
HpySE526I	ACGT	1 cut(s)	188
Hsp92II	CATG	3 cut(s)	143, 259, 493
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	42, 394
LmnI	GCTCC	2 cut(s)	176, 479
LpnPI	CCDG	9 cut(s)	68, 116, 133, 235, 273, 306, 411, 430, 475
Lsp1109I	GCAGC	2 cut(s)	179, 191
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	2 cut(s)	302, 386
MaeII	ACGT	1 cut(s)	188
MaeIII	GTNAC	3 cut(s)	46, 85, 198
MalI	GATC	2 cut(s)	44, 396
MboI	GATC	2 cut(s)	42, 394
MboII	GAAGA	2 cut(s)	425, 535
MfeI	CAATTG	1 cut(s)	171
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	2 cut(s)	27, 171
MlyI	GAGTC	1 cut(s)	360
MnlI	CCTC	7 cut(s)	33, 34, 228, 365, 385, 523, 530
Mph1103I	ATGCAT	2 cut(s)	145, 257
MseI	TTAA	3 cut(s)	191, 441, 550
MslI	CAYNNNNRTG	2 cut(s)	488, 494
MspI	CCGG	1 cut(s)	462
MunI	CAATTG	1 cut(s)	171
MwoI	GCNNNNNNNGC	6 cut(s)	11, 65, 167, 176, 252, 455
NdeII	GATC	2 cut(s)	42, 394
NlaIII	CATG	3 cut(s)	143, 259, 493
NlaIV	GGNNCC	3 cut(s)	115, 396, 481
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	2 cut(s)	145, 257
NspI	RCATGY	1 cut(s)	259
PaeI	GCATGC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	169, 181
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
PspEI	GGTNACC	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	115, 396, 481
PsuI	RGATCY	1 cut(s)	394
RseI	CAYNNNNRTG	2 cut(s)	488, 494
SaqAI	TTAA	3 cut(s)	191, 441, 550
SatI	GCNGC	2 cut(s)	168, 180
Sau3AI	GATC	2 cut(s)	42, 394
SchI	GAGTC	1 cut(s)	360
SetI	ASST	9 cut(s)	16, 152, 184, 191, 205, 239, 296, 307, 541
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	488, 494
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	27, 171
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	2 cut(s)	302, 386
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	1 cut(s)	198
TaiI	ACGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	523
TasI	AATT	2 cut(s)	27, 171
Tru1I	TTAA	3 cut(s)	191, 441, 550
Tru9I	TTAA	3 cut(s)	191, 441, 550
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	167, 179
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	128, 426
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	510
XceI	RCATGY	1 cut(s)	259
XspI	CTAG	2 cut(s)	302, 386
Zsp2I	ATGCAT	2 cut(s)	145, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.