Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008137

Physical Location & Seq

Genomic Coordinates Reverse (-)

67018787 .. 67019402

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00275620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTAAAGCTATTCCTGCCCTGGTTCTTGTATTCAGGAGCCTTACCCTTGCAGCCTGTGTTGCTTCTGGGCTGCTTCTCGTTCTCGACAACTTTAAAGATGAGGATGGTGATAAACTACATTTTTATGACATCATTACATTCAGGTATGTGCTTTCTGCAGCAGCAATTGGAGCAGCTTACAGCCTACTACAGCTACCATTTAACATATACCATGCTTGCACCAATAAGCGCTTGATACGCAACAGGTGCATGCCCGAGTTTGATTTCTATTCCGACAAGGTAGTGACCTTGGTTCTAGCTTCGGGTGTGGGAGCTGGTTTTGCAGCGGGATTTGAGCTCAAAAAGTTTTTCAAACTATTACTTCAAGTGGCGTCACTAGGAATTGACGACAACAACTGCCATCAAGAACGAGCCAAGTGCAATGACTTCTTTGAGAAGGCAATTATTTCCAGCGGAATTCTCTTGGTTGGAGCTGTTTGCATGGCTGTGGTTTCGATTCTCACTTCCATCACTCGGACTTCAAATTCGGGTTTCTTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

181

Amino Acids

19.72

Weight (kDa)

8.21

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	6 - 111	1.7e-15	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008137)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17860 FvH4_5g17870
malus_domestica	MD14G1241700.v1.1
prunus_persica	Prupe.5G239200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177721 RchiOBHm_Chr7g0177731
rosa_laevigata	RLG00000005510 RLG00000005511
rosa_multiflora	Rmu_co8111538.1_g000001 Rmu_co8352477.1_g000001 Rmu_sc0004786.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275610 Rroxscaffold_3G00275620
rosa_rugosa	Rorug06G0408500 Rorug06G0408600.1
rosa_samantha	Rh7AG008300 Rh7AG008400 Rh7BG008300 Rh7BG008400 Rh7CG008700 Rh7CG008800 Rh7DG008400 Rh7DG008500
rosa_wichuraiana	Rw7G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	329, 456
AcsI	RAATTY	2 cut(s)	459, 526
AcyI	GRCGYC	1 cut(s)	374
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	355, 368, 525
AjnI	CCWGG	1 cut(s)	21
AluBI	AGCT	7 cut(s)	11, 179, 196, 302, 317, 340, 476
AluI	AGCT	7 cut(s)	11, 179, 196, 302, 317, 340, 476
Alw21I	GWGCWC	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	257
Aor51HI	AGCGCT	1 cut(s)	233
ApeKI	GCWGC	6 cut(s)	53, 73, 161, 164, 176, 326
ApoI	RAATTY	2 cut(s)	459, 526
ArsI	GACNNNNNNTTYG	2 cut(s)	511, 543
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	122
AvaI	CYCGRG	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
BccI	CCATC	3 cut(s)	101, 411, 518
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	1 cut(s)	23
BfaI	CTAG	2 cut(s)	299, 380
BfmI	CTRYAG	2 cut(s)	159, 191
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
BlsI	GCNGC	6 cut(s)	55, 75, 163, 166, 178, 328
Bme1390I	CCNGG	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	2 cut(s)	21, 291
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	23
BseDI	CCNNGG	2 cut(s)	21, 291
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseMI	GCAATG	1 cut(s)	430
BseXI	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	516
BsoBI	CYCGRG	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	342
BspACI	CCGC	2 cut(s)	329, 456
BspLI	GGNNCC	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	163
BsrDI	GCAATG	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	21, 291
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	23
BstACI	GRCGYC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	220, 254
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 62, 173, 240, 249, 323
BstNI	CCWGG	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	256
BstSCI	CCNGG	1 cut(s)	21
BstSFI	CTRYAG	2 cut(s)	159, 191
BstV1I	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	220, 254
CfoI	GCGC	1 cut(s)	234
CseI	GACGC	1 cut(s)	363
CviAII	CATG	3 cut(s)	215, 253, 484
DraI	TTTAAA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	342
Eco47III	AGCGCT	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	21
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	3 cut(s)	218, 256, 487
FaiI	YATR	7 cut(s)	129, 150, 209, 211, 216, 254, 485
FatI	CATG	3 cut(s)	214, 252, 483
FauI	CCCGC	1 cut(s)	322
Fnu4HI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
FspBI	CTAG	2 cut(s)	299, 380
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
HaeII	RGCGCY	1 cut(s)	235
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	3 cut(s)	218, 256, 487
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	499
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	277, 519, 542
Hpy188III	TCNNGA	3 cut(s)	37, 86, 407
HpyAV	CCTTC	1 cut(s)	433
HpyCH4V	TGCA	7 cut(s)	53, 161, 222, 252, 326, 423, 483
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 62, 173, 240, 249, 323
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	3 cut(s)	218, 256, 487
HspAI	GCGC	1 cut(s)	232
LmnI	GCTCC	4 cut(s)	39, 173, 314, 473
Lsp1109I	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
MaeI	CTAG	2 cut(s)	299, 380
MaeIII	GTNAC	2 cut(s)	286, 375
MboII	GAAGA	1 cut(s)	529
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	5 cut(s)	168, 384, 444, 459, 526
MmeI	TCCRAC	2 cut(s)	300, 451
MnlI	CCTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	96, 204
MslI	CAYNNNNRTG	2 cut(s)	126, 488
MspA1I	CMGCKG	2 cut(s)	329, 456
MspR9I	CCNGG	1 cut(s)	23
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	17, 62, 173, 240, 249, 323
NlaIII	CATG	3 cut(s)	218, 256, 487
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	286, 375
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	6 cut(s)	55, 75, 163, 166, 178, 328
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	21
PspGI	CCWGG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	163
RseI	CAYNNNNRTG	2 cut(s)	126, 488
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	96, 204
SatI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
ScrFI	CCNGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	342
SfcI	CTRYAG	2 cut(s)	159, 191
SmiMI	CAYNNNNRTG	2 cut(s)	126, 488
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	5 cut(s)	168, 384, 444, 459, 526
SsiI	CCGC	2 cut(s)	329, 456
SspMI	CTAG	2 cut(s)	299, 380
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	21
StyI	CCWWGG	1 cut(s)	291
TaqI	TCGA	2 cut(s)	87, 497
TasI	AATT	5 cut(s)	168, 384, 444, 459, 526
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	2 cut(s)	96, 204
Tru9I	TTAA	2 cut(s)	96, 204
TseFI	GTSAC	2 cut(s)	286, 375
TseI	GCWGC	6 cut(s)	53, 73, 161, 164, 176, 326
Tsp45I	GTSAC	2 cut(s)	286, 375
XapI	RAATTY	2 cut(s)	459, 526
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	2 cut(s)	299, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.