Rh7BG008400

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008137
Physical Location & Seq
Forward (+)
498360 .. 499365
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG008400.1

Sequence Viewer

Length: 387 bp
ATGGCGTCTGAAGCTATTCCTTGCGCAGTTCTGGTATTCAGGATATTTACCCTTGCGGCCTGCGTTGCTTCTGGCTGGTTACTTGTTCTCGACCACTTTACAATTTCTAATCAGAAATTACGTTTTCAGGATCTGGTTACGTTCAGGTATGTGCTTTCTGCAGCAGTAATTGGAGCAGCATACAGCATACTACAGCTACCTTTTAATATATACTATGCTTCCACCCAAAAGCGTTTGATACGCAACGGATGCATGCCGGATTTTGATTTCTATGCCGACAAGGTAGTGAGCTTGATTCTATCTTCGGCTGTGGGAGCTGGTTTTGGAGCGGGAGTTGAGCTCAAAAAGTTTATCGAAGCGTTACTTGATTCCTCTGCTCCGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

128

Amino Acids

13.93

Weight (kDa)

7.69

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 7 - 112 6.2e-17 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 25
AccBSI CCGCTC 1 cut(s) 329
AciI CCGC 3 cut(s) 56, 329, 380
AclWI GGATC 1 cut(s) 138
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 5
AluBI AGCT 5 cut(s) 14, 196, 291, 317, 340
AluI AGCT 5 cut(s) 14, 196, 291, 317, 340
Alw21I GWGCWC 1 cut(s) 342
AlwI GGATC 1 cut(s) 138
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 161, 176
Asp700I GAANNNNTTC 1 cut(s) 15
AspLEI GCGC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 342
BbvI GCAGC 2 cut(s) 173, 188
BfmI CTRYAG 2 cut(s) 159, 191
BisI GCNGC 3 cut(s) 57, 162, 177
BlsI GCNGC 3 cut(s) 58, 163, 178
BmsI GCATC 1 cut(s) 239
BplI GAGNNNNNCTC 2 cut(s) 324, 356
BsaHI GRCGYC 1 cut(s) 5
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
BseGI GGATG 1 cut(s) 254
BseXI GCAGC 2 cut(s) 173, 188
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 257
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 3 cut(s) 56, 329, 380
BspANI GGCC 1 cut(s) 59
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 138
BsrBI CCGCTC 1 cut(s) 329
BssMI GATC 1 cut(s) 130
BssNI GRCGYC 1 cut(s) 5
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 61, 254
BstF5I GGATG 1 cut(s) 254
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 4 cut(s) 11, 65, 249, 314
BstNSI RCATGY 1 cut(s) 256
BstSFI CTRYAG 2 cut(s) 159, 191
BstV1I GCAGC 2 cut(s) 173, 188
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 254
Cac8I GCNNGC 2 cut(s) 61, 254
CaiI CAGNNNCTG 1 cut(s) 133
CfoI GCGC 1 cut(s) 26
CviAII CATG 1 cut(s) 253
CviJI RGCY 8 cut(s) 14, 59, 75, 196, 291, 308, 317, 340
CviKI_1 RGCY 8 cut(s) 14, 59, 75, 196, 291, 308, 317, 340
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
EciI GGCGGA 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 254
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 1 cut(s) 256
FaiI YATR 8 cut(s) 150, 181, 188, 209, 211, 216, 254, 273
FalI AAGNNNNNCTT 2 cut(s) 348, 380
FatI CATG 1 cut(s) 252
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 57, 162, 177
FokI GGATG 1 cut(s) 261
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 3 cut(s) 57, 162, 177
FspI TGCGCA 1 cut(s) 25
GlaI GCGC 1 cut(s) 25
GluI GCNGC 3 cut(s) 57, 162, 177
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 2 cut(s) 295, 368
HpaII CCGG 1 cut(s) 257
Hpy188I TCNGA 2 cut(s) 10, 114
Hpy188III TCNNGA 3 cut(s) 40, 89, 128
HpyCH4IV ACGT 2 cut(s) 121, 140
HpyCH4V TGCA 2 cut(s) 161, 252
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 65, 249, 314
HpySE526I ACGT 2 cut(s) 121, 140
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 4 cut(s) 173, 314, 326, 382
Lsp1109I GCAGC 2 cut(s) 173, 188
LweI GCATC 1 cut(s) 239
MaeII ACGT 2 cut(s) 121, 140
MaeIII GTNAC 3 cut(s) 78, 136, 360
MalI GATC 1 cut(s) 132
MbiI CCGCTC 1 cut(s) 329
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 294
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 3 cut(s) 102, 116, 168
MnlI CCTC 1 cut(s) 382
Mph1103I ATGCAT 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 15
MseI TTAA 1 cut(s) 204
MspI CCGG 1 cut(s) 257
MwoI GCNNNNNNNGC 4 cut(s) 11, 65, 249, 314
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 256
NsbI TGCGCA 1 cut(s) 25
NsiI ATGCAT 1 cut(s) 254
NspI RCATGY 1 cut(s) 256
PaeI GCATGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 15
PfeI GAWTC 2 cut(s) 295, 368
PkrI GCNGC 3 cut(s) 58, 163, 178
Psp124BI GAGCTC 1 cut(s) 342
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 130
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 57, 162, 177
Sau3AI GATC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 2 cut(s) 159, 191
SphI GCATGC 1 cut(s) 256
Sse9I AATT 3 cut(s) 102, 116, 168
SsiI CCGC 3 cut(s) 56, 329, 380
SstI GAGCTC 1 cut(s) 342
TaiI ACGT 2 cut(s) 124, 143
TaqI TCGA 2 cut(s) 90, 354
TasI AATT 3 cut(s) 102, 116, 168
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 2 cut(s) 295, 368
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 2 cut(s) 161, 176
TspGWI ACGGA 1 cut(s) 261
XceI RCATGY 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.