Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008137

Physical Location & Seq

Genomic Coordinates Forward (+)

656988 .. 657626

Gene Structure 639 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG008700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTAAAGCTATTCCTGCCCTAGTTCTTGTATTCAGGATCCTTACCCTTGCAGCCTGTGTTGCTTCTGGGCTGCTTCTCGTTCTCGACAACTTTAAAGATGAGGATGGTGATAAACTACATTTTTATGACATCATTACATTCAGGTATGTGCTTTCTGCAGCAGCAATTGGAGCAGCATACAGCCTACTACAGCTACCATTTAACATATACTATGCTTGCACCAATAAGCGCTTGATACGCAACAGGTGCATGCCGGAGTTTGATTTCTATTCCGACAGGGTAGTGACCTTGGTTCTAGCTTCGGGTGTGGGAGCTGGTTTTGCAGCTGGATTTGAGCTCAAAAAGTTTTTCAAACTATTACTTCAAGTGGCGTCACTAGGAATTGACGACAACAACTTCGATCAAGAACTAGCCAAGTACAATGACTTCTTTGAGAAGGCAATTATTTCCAGCGGAATTCTCTTGGTTGGAGCTGTTTGCATGGCTGTGGCTTCGATTCTCACTTCCATCACTCGGACTTCAAATTCGGGTTTCTTCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

181

Amino Acids

19.81

Weight (kDa)

6.56

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	6 - 111	2e-15	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008137)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17860 FvH4_5g17870
malus_domestica	MD14G1241700.v1.1
prunus_persica	Prupe.5G239200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177721 RchiOBHm_Chr7g0177731
rosa_laevigata	RLG00000005510 RLG00000005511
rosa_multiflora	Rmu_co8111538.1_g000001 Rmu_co8352477.1_g000001 Rmu_sc0004786.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275610 Rroxscaffold_3G00275620
rosa_rugosa	Rorug06G0408500 Rorug06G0408600.1
rosa_samantha	Rh7AG008300 Rh7AG008400 Rh7BG008300 Rh7BG008400 Rh7CG008700 Rh7CG008800 Rh7DG008400 Rh7DG008500
rosa_wichuraiana	Rw7G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	456
AclWI	GGATC	2 cut(s)	34, 47
AcsI	RAATTY	2 cut(s)	459, 526
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	1 cut(s)	422
AfeI	AGCGCT	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	516
AgsI	TTSAA	3 cut(s)	355, 368, 525
AluBI	AGCT	7 cut(s)	11, 196, 302, 317, 329, 340, 476
AluI	AGCT	7 cut(s)	11, 196, 302, 317, 329, 340, 476
Alw21I	GWGCWC	1 cut(s)	342
AlwI	GGATC	2 cut(s)	34, 47
Aor51HI	AGCGCT	1 cut(s)	233
ApeKI	GCWGC	6 cut(s)	53, 73, 161, 164, 176, 326
ApoI	RAATTY	2 cut(s)	459, 526
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 415, 511, 543
AspLEI	GCGC	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	122
BamHI	GGATCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	342
BarI	GAAGNNNNNNTAC	2 cut(s)	413, 445
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
BccI	CCATC	2 cut(s)	101, 518
BfaI	CTAG	4 cut(s)	23, 299, 380, 413
BfmI	CTRYAG	2 cut(s)	159, 191
BfoI	RGCGCY	1 cut(s)	235
BisI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
BlsI	GCNGC	6 cut(s)	55, 75, 163, 166, 178, 328
BmiI	GGNNCC	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	291
Bsc4I	CCNNNNNNNGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	1 cut(s)	516
BseXI	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	39, 403
BspACI	CCGC	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	41
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	2 cut(s)	34, 47
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	2 cut(s)	39, 403
BssNI	GRCGYC	1 cut(s)	374
BssT1I	CCWWGG	1 cut(s)	291
BstACI	GRCGYC	1 cut(s)	374
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	220, 254
BstF5I	GGATG	1 cut(s)	112
BstH2I	RGCGCY	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	234
BstKTI	GATC	2 cut(s)	42, 406
BstMBI	GATC	2 cut(s)	39, 403
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 62, 173, 240, 249, 323
BstNSI	RCATGY	1 cut(s)	256
BstSFI	CTRYAG	2 cut(s)	159, 191
BstV1I	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
BstX2I	RGATCY	1 cut(s)	39
BstYI	RGATCY	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	112
Cac8I	GCNNGC	2 cut(s)	220, 254
CfoI	GCGC	1 cut(s)	234
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	253, 484
CviQI	GTAC	1 cut(s)	421
DpnI	GATC	2 cut(s)	41, 405
DpnII	GATC	2 cut(s)	39, 403
DraI	TTTAAA	1 cut(s)	97
Ecl136II	GAGCTC	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	342
Eco47III	AGCGCT	1 cut(s)	233
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	342
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	2 cut(s)	256, 487
FaiI	YATR	8 cut(s)	129, 150, 181, 209, 211, 216, 254, 485
FatI	CATG	2 cut(s)	252, 483
Fnu4HI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
FokI	GGATG	1 cut(s)	119
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
FspBI	CTAG	4 cut(s)	23, 299, 380, 413
GlaI	GCGC	1 cut(s)	233
GluI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
HaeII	RGCGCY	1 cut(s)	235
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	2 cut(s)	256, 487
Hin6I	GCGC	1 cut(s)	232
HinP1I	GCGC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	499
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	122
Hpy188I	TCNGA	3 cut(s)	277, 519, 542
Hpy188III	TCNNGA	3 cut(s)	37, 86, 407
HpyAV	CCTTC	1 cut(s)	433
HpyCH4V	TGCA	6 cut(s)	53, 161, 222, 252, 326, 483
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 62, 173, 240, 249, 323
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	2 cut(s)	256, 487
HspAI	GCGC	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	39, 403
LmnI	GCTCC	3 cut(s)	173, 314, 473
Lsp1109I	GCAGC	6 cut(s)	60, 65, 173, 176, 188, 338
MaeI	CTAG	4 cut(s)	23, 299, 380, 413
MaeIII	GTNAC	2 cut(s)	286, 375
MalI	GATC	2 cut(s)	41, 405
MboI	GATC	2 cut(s)	39, 403
MboII	GAAGA	1 cut(s)	529
MfeI	CAATTG	1 cut(s)	168
MflI	RGATCY	1 cut(s)	39
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	5 cut(s)	168, 384, 444, 459, 526
MmeI	TCCRAC	2 cut(s)	300, 451
MnlI	CCTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	96, 204
MslI	CAYNNNNRTG	2 cut(s)	126, 488
MspA1I	CMGCKG	2 cut(s)	329, 456
MspI	CCGG	1 cut(s)	257
MunI	CAATTG	1 cut(s)	168
MwoI	GCNNNNNNNGC	6 cut(s)	17, 62, 173, 240, 249, 323
NdeII	GATC	2 cut(s)	39, 403
NlaIII	CATG	2 cut(s)	256, 487
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	2 cut(s)	286, 375
NspI	RCATGY	1 cut(s)	256
PaeI	GCATGC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	499
PkrI	GCNGC	6 cut(s)	55, 75, 163, 166, 178, 328
Psp124BI	GAGCTC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	39
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	2 cut(s)	126, 488
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	2 cut(s)	96, 204
SatI	GCNGC	6 cut(s)	54, 74, 162, 165, 177, 327
Sau3AI	GATC	2 cut(s)	39, 403
SduI	GDGCHC	1 cut(s)	342
SfcI	CTRYAG	2 cut(s)	159, 191
SmiMI	CAYNNNNRTG	2 cut(s)	126, 488
SphI	GCATGC	1 cut(s)	256
Sse9I	AATT	5 cut(s)	168, 384, 444, 459, 526
SsiI	CCGC	1 cut(s)	456
SspMI	CTAG	4 cut(s)	23, 299, 380, 413
SstI	GAGCTC	1 cut(s)	342
StyI	CCWWGG	1 cut(s)	291
TaqI	TCGA	3 cut(s)	87, 402, 497
TasI	AATT	5 cut(s)	168, 384, 444, 459, 526
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	1 cut(s)	499
Tru1I	TTAA	2 cut(s)	96, 204
Tru9I	TTAA	2 cut(s)	96, 204
TseFI	GTSAC	2 cut(s)	286, 375
TseI	GCWGC	6 cut(s)	53, 73, 161, 164, 176, 326
Tsp45I	GTSAC	2 cut(s)	286, 375
XapI	RAATTY	2 cut(s)	459, 526
XceI	RCATGY	1 cut(s)	256
XspI	CTAG	4 cut(s)	23, 299, 380, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.