Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8111538.1

Orthogroup ID

OG0008137

Physical Location & Seq

Genomic Coordinates Forward (+)

144 .. 434

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8111538.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgccggagtttgatttctattccgacagggtagtgaccttcgttctagcttcgggtgtgggagctggttttgcagctggatttgagctcaaaaagtttttcaaactattacttcaagtggcgtcactaggaattgactacaacaacttcgatcaagaactagccaagtacaatgacttctttgagaaggcaattatttccagcggaattctcttggttggagctgtttgcatggctgtggtttcgattctcacttccatcactcggacttcaaattcgggtttcttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

96

Amino Acids

10.48

Weight (kDa)

4.81

Isoelectric Point (pI)

25.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008137)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17860 FvH4_5g17870
malus_domestica	MD14G1241700.v1.1
prunus_persica	Prupe.5G239200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0177721 RchiOBHm_Chr7g0177731
rosa_laevigata	RLG00000005510 RLG00000005511
rosa_multiflora	Rmu_co8111538.1_g000001 Rmu_co8352477.1_g000001 Rmu_sc0004786.1_g000004
rosa_roxburghii	Rroxscaffold_3G00275610 Rroxscaffold_3G00275620
rosa_rugosa	Rorug06G0408500 Rorug06G0408600.1
rosa_samantha	Rh7AG008300 Rh7AG008400 Rh7BG008300 Rh7BG008400 Rh7CG008700 Rh7CG008800 Rh7DG008400 Rh7DG008500
rosa_wichuraiana	Rw7G000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	207, 274
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	1 cut(s)	264
AgsI	TTSAA	3 cut(s)	103, 116, 273
AluBI	AGCT	5 cut(s)	50, 65, 77, 88, 224
AluI	AGCT	5 cut(s)	50, 65, 77, 88, 224
Alw21I	GWGCWC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	207, 274
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
BanII	GRGCYC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	266
BfaI	CTAG	3 cut(s)	47, 128, 161
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	151
BspACI	CCGC	1 cut(s)	204
BssMI	GATC	1 cut(s)	151
BssNI	GRCGYC	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	86
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	7 cut(s)	50, 65, 77, 88, 164, 224, 236
CviKI_1	RGCY	7 cut(s)	50, 65, 77, 88, 164, 224, 236
CviQI	GTAC	1 cut(s)	169
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	90
FaeI	CATG	1 cut(s)	235
FaiI	YATR	1 cut(s)	233
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	3 cut(s)	47, 128, 161
GluI	GCNGC	1 cut(s)	75
HapII	CCGG	1 cut(s)	5
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	1 cut(s)	247
HpaII	CCGG	1 cut(s)	5
Hpy188I	TCNGA	3 cut(s)	25, 267, 290
Hpy188III	TCNNGA	1 cut(s)	155
HpyAV	CCTTC	2 cut(s)	49, 181
HpyCH4V	TGCA	2 cut(s)	74, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	62, 221
LpnPI	CCDG	5 cut(s)	13, 18, 51, 63, 214
Lsp1109I	GCAGC	1 cut(s)	86
MaeI	CTAG	3 cut(s)	47, 128, 161
MaeIII	GTNAC	2 cut(s)	34, 123
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	1 cut(s)	277
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	4 cut(s)	132, 192, 207, 274
MmeI	TCCRAC	2 cut(s)	48, 199
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	77, 204
MspI	CCGG	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	1 cut(s)	151
NlaIII	CATG	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	34, 123
PfeI	GAWTC	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	90
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	90
SetI	ASST	6 cut(s)	41, 52, 67, 79, 90, 226
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	4 cut(s)	132, 192, 207, 274
SsiI	CCGC	1 cut(s)	204
SspMI	CTAG	3 cut(s)	47, 128, 161
SstI	GAGCTC	1 cut(s)	90
TaqI	TCGA	2 cut(s)	150, 245
TasI	AATT	4 cut(s)	132, 192, 207, 274
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	34, 123
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	34, 123
XapI	RAATTY	2 cut(s)	207, 274
XspI	CTAG	3 cut(s)	47, 128, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.