Rw7G000690

Aldo/keto reductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017668
Physical Location & Seq
Reverse (-)
563154 .. 564673
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000690.1

Sequence Viewer

Length: 897 bp
ATGGATGAGAGAGGCAAGAATGTAGTCGTTATCCCGGAAGTAGTACTGAATTCCGGGAAGAAGATGCCGGTGCTAGGCTTTGGCACCGGAGTTTTCGGGAGTCCTCCACCCGCTCAAACCCTGGCTCTTATTCTCCTCGACGCCATTGAGCTTGGCTACCGTCACTTTGACACTGCTGCTCTCTATGGAACCGAAGAAGCCGTAGGTCTCGCCATCACCCAAGCCCTAGACCGAGGTCTCATCAAGACTCGCGATGAGTTGTTCATCACTTCCAAGCTCTGGTGCACTGACGCCCATCATGATCTTGTTCTCCCAGCTCTTAAATTGACACTACAGAGGCTGGGATTGGAGTATGTGGATCTATACCTGATTCATTGGCCGGTGAGGATGAAACAAGGAACTCCGGCAATACCAAAGTCGAAAGAGGACTTGCTTCCCTTTGATATAATCGGGACATGGGAGGCGATGGAAGAGTGCTACAGGCTGGGATTGGCCAAGTCTATTGGCGTCAGCAACTTTGGTACCAAAAAGCTCTCTCAAATCCTTGACAACGGGACCATCCCTCCAGCGGTCAATCAGGTGGAAATGAACCCGTCCTGGCAGCAAGGAAATCTGCGAGACTTCTGTAAAGGAAAAGGAATTCATGTGACTGCATGGTCTTCCTTGGGGTTTTATGGAGCTACCAGCTGGGCTCCAAAACCCTGGATAGACTATGCCATCATTAAGGACATCGCTGCTGCAAAGGGGAAGAGAGCGGTGAGTGCAATTTCGAGGAGTTTCAACAAGGAGAGGATGATGGATAATGCTCAAATATTTGATTGGGAGCTAAGAGACTTCTTCGTTTCCGAAGAAGGTCAATACAAATCCGTCGACGACCTTTGGGATGGCAACCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aldo_ket_red

Protein Analysis

298

Amino Acids

33.17

Weight (kDa)

5.8

Isoelectric Point (pI)

32.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 25 - 224 4e-39 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017668)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g17900
malus_domestica MD14G1241800.v1.1
rosa_chinensis RchiOBHm_Chr7g0177711
rosa_laevigata RLG00000005512
rosa_multiflora Rmu_sc0004786.1_g000003
rosa_roxburghii Rroxscaffold_3G00275630
rosa_rugosa Rorug06G0408500
rosa_samantha Rh7AG008200 Rh7BG008200 Rh7CG008600 Rh7DG008300
rosa_wichuraiana Rw7G000690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 655
Acc65I GGTACC 1 cut(s) 521
AccB1I GGYRCC 2 cut(s) 83, 521
AccB7I CCANNNNNTGG 1 cut(s) 279
AccBSI CCGCTC 2 cut(s) 113, 755
AccI GTMKAC 1 cut(s) 870
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 111, 569, 755
AclWI GGATC 1 cut(s) 366
AcoI YGGCCR 2 cut(s) 377, 492
AcsI RAATTY 2 cut(s) 49, 639
AcyI GRCGYC 3 cut(s) 141, 291, 507
AfaI GTAC 2 cut(s) 45, 523
AfiI CCNNNNNNNGG 3 cut(s) 74, 279, 568
AgsI TTSAA 1 cut(s) 781
AjnI CCWGG 3 cut(s) 120, 596, 701
AluBI AGCT 7 cut(s) 151, 277, 317, 532, 680, 687, 826
AluI AGCT 7 cut(s) 151, 277, 317, 532, 680, 687, 826
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 4 cut(s) 212, 242, 612, 825
Alw44I GTGCAC 1 cut(s) 283
AlwI GGATC 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 340
AoxI GGCC 2 cut(s) 377, 492
ApaLI GTGCAC 1 cut(s) 283
ApeKI GCWGC 4 cut(s) 176, 601, 734, 737
ApoI RAATTY 2 cut(s) 49, 639
Asp718I GGTACC 1 cut(s) 521
AspS9I GGNCC 1 cut(s) 555
AsuC2I CCSGG 2 cut(s) 35, 55
AsuHPI GGTGA 3 cut(s) 208, 394, 769
AvaII GGWCC 1 cut(s) 555
BaeGI GKGCMC 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 505, 538
BalI TGGCCA 1 cut(s) 494
BanI GGYRCC 2 cut(s) 83, 521
BanII GRGCYC 1 cut(s) 694
BbsI GAAGAC 1 cut(s) 651
Bbv12I GWGCWC 1 cut(s) 287
BbvI GCAGC 4 cut(s) 163, 613, 721, 724
BccI CCATC 7 cut(s) 221, 303, 460, 566, 725, 790, 878
BceAI ACGGC 1 cut(s) 185
BciT130I CCWGG 3 cut(s) 122, 598, 703
BcnI CCSGG 2 cut(s) 35, 55
BcoDI GTCTC 4 cut(s) 212, 242, 612, 825
BfaI CTAG 2 cut(s) 74, 227
BfmI CTRYAG 2 cut(s) 332, 478
BisI GCNGC 4 cut(s) 177, 602, 735, 738
BlsI GCNGC 4 cut(s) 178, 603, 736, 739
BmcAI AGTACT 1 cut(s) 45
Bme1390I CCNGG 5 cut(s) 35, 55, 122, 598, 703
Bme18I GGWCC 1 cut(s) 555
BmgT120I GGNCC 1 cut(s) 555
BmiI GGNNCC 5 cut(s) 85, 190, 523, 556, 693
BmrFI CCNGG 5 cut(s) 35, 55, 122, 598, 703
BmsI GCATC 1 cut(s) 54
BoxI GACNNNNGTC 1 cut(s) 234
BpiI GAAGAC 1 cut(s) 651
BpmI CTGGAG 1 cut(s) 549
BpuMI CCSGG 2 cut(s) 35, 55
BsaHI GRCGYC 3 cut(s) 141, 291, 507
BsaI GGTCTC 2 cut(s) 212, 242
BsaJI CCNNGG 4 cut(s) 120, 232, 663, 701
BsaWI WCCGGW 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 547, 577
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 279, 568
Bse118I RCCGGY 2 cut(s) 67, 379
BseBI CCWGG 3 cut(s) 122, 598, 703
BseDI CCNNGG 4 cut(s) 120, 232, 663, 701
BseGI GGATG 5 cut(s) 10, 393, 558, 798, 889
BseLI CCNNNNNNNGG 3 cut(s) 74, 279, 568
BseRI GAGGAG 2 cut(s) 125, 787
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 4 cut(s) 163, 613, 721, 724
BseYI CCCAGC 4 cut(s) 313, 340, 484, 687
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 2 cut(s) 379, 494
BshNI GGYRCC 2 cut(s) 83, 521
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 6 cut(s) 35, 54, 68, 87, 380, 404
BslFI GGGAC 2 cut(s) 466, 568
BslI CCNNNNNNNGG 3 cut(s) 74, 279, 568
BsmAI GTCTC 4 cut(s) 212, 242, 612, 825
BsmFI GGGAC 2 cut(s) 466, 568
BsnI GGCC 2 cut(s) 379, 494
Bso31I GGTCTC 2 cut(s) 212, 242
Bsp1286I GDGCHC 2 cut(s) 287, 694
Bsp143I GATC 2 cut(s) 301, 358
Bsp68I TCGCGA 1 cut(s) 252
BspACI CCGC 3 cut(s) 111, 569, 755
BspANI GGCC 2 cut(s) 379, 494
BspFNI CGCG 1 cut(s) 252
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 5 cut(s) 85, 190, 523, 556, 693
BspPI GGATC 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 83, 521
BspTNI GGTCTC 2 cut(s) 212, 242
BsrBI CCGCTC 2 cut(s) 113, 755
BsrFI RCCGGY 2 cut(s) 67, 379
BssAI RCCGGY 2 cut(s) 67, 379
BssECI CCNNGG 4 cut(s) 120, 232, 663, 701
BssMI GATC 2 cut(s) 301, 358
BssNI GRCGYC 3 cut(s) 141, 291, 507
BssT1I CCWWGG 1 cut(s) 663
Bst2UI CCWGG 3 cut(s) 122, 598, 703
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 465, 743
BstACI GRCGYC 3 cut(s) 141, 291, 507
BstDEI CTNAG 1 cut(s) 827
BstF5I GGATG 5 cut(s) 10, 393, 558, 798, 889
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 2 cut(s) 304, 361
BstMAI GTCTC 4 cut(s) 212, 242, 612, 825
BstMBI GATC 2 cut(s) 301, 358
BstMWI GCNNNNNNNGC 1 cut(s) 761
BstNI CCWGG 3 cut(s) 122, 598, 703
BstPAI GACNNNNGTC 1 cut(s) 234
BstSCI CCNGG 5 cut(s) 33, 53, 120, 596, 701
BstSFI CTRYAG 2 cut(s) 332, 478
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 4 cut(s) 163, 613, 721, 724
BstV2I GAAGAC 1 cut(s) 651
BstX2I RGATCY 1 cut(s) 358
BstXI CCANNNNNNTGG 1 cut(s) 702
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 2 cut(s) 379, 494
BtgZI GCGATG 3 cut(s) 267, 479, 715
BtsCI GGATG 5 cut(s) 10, 393, 558, 798, 889
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 285
BtuMI TCGCGA 1 cut(s) 252
CaiI CAGNNNCTG 1 cut(s) 340
CciI TCATGA 1 cut(s) 298
Cfr10I RCCGGY 2 cut(s) 67, 379
Cfr13I GGNCC 1 cut(s) 555
CseI GACGC 3 cut(s) 149, 299, 496
Csp6I GTAC 2 cut(s) 44, 522
CviAII CATG 4 cut(s) 299, 456, 644, 654
CviQI GTAC 2 cut(s) 44, 522
DdeI CTNAG 1 cut(s) 827
DpnI GATC 2 cut(s) 303, 360
DpnII GATC 2 cut(s) 301, 358
DrdI GACNNNNNNGTC 1 cut(s) 655
DseDI GACNNNNNNGTC 1 cut(s) 655
EaeI YGGCCR 2 cut(s) 377, 492
Eam1104I CTCTTC 2 cut(s) 465, 743
EarI CTCTTC 2 cut(s) 465, 743
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 1 cut(s) 694
Eco31I GGTCTC 2 cut(s) 212, 242
Eco47I GGWCC 1 cut(s) 555
EcoRI GAATTC 2 cut(s) 49, 639
EcoRII CCWGG 3 cut(s) 120, 596, 701
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 1 cut(s) 694
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 4 cut(s) 302, 459, 647, 657
FaqI GGGAC 2 cut(s) 466, 568
FatI CATG 4 cut(s) 298, 455, 643, 653
FauI CCCGC 1 cut(s) 118
FblI GTMKAC 1 cut(s) 870
Fnu4HI GCNGC 4 cut(s) 177, 602, 735, 738
FokI GGATG 4 cut(s) 17, 400, 545, 805
FriOI GRGCYC 1 cut(s) 694
Fsp4HI GCNGC 4 cut(s) 177, 602, 735, 738
FspBI CTAG 2 cut(s) 74, 227
GluI GCNGC 4 cut(s) 177, 602, 735, 738
GsaI CCCAGC 4 cut(s) 317, 344, 488, 691
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 2 cut(s) 379, 494
HapII CCGG 6 cut(s) 35, 54, 68, 87, 380, 404
HgaI GACGC 3 cut(s) 149, 299, 496
Hin1I GRCGYC 3 cut(s) 141, 291, 507
Hin1II CATG 4 cut(s) 302, 459, 647, 657
HincII GTYRAC 1 cut(s) 871
HindII GTYRAC 1 cut(s) 871
HinfI GANTC 3 cut(s) 100, 247, 370
HpaII CCGG 6 cut(s) 35, 54, 68, 87, 380, 404
HphI GGTGA 3 cut(s) 208, 394, 769
Hpy166II GTNNAC 2 cut(s) 285, 871
Hpy188I TCNGA 1 cut(s) 847
Hpy188III TCNNGA 5 cut(s) 97, 244, 251, 299, 451
Hpy8I GTNNAC 2 cut(s) 285, 871
Hpy99I CGWCG 3 cut(s) 143, 872, 875
HpyAV CCTTC 1 cut(s) 845
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4V TGCA 4 cut(s) 285, 653, 740, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 761
HpyF3I CTNAG 1 cut(s) 827
Hsp92I GRCGYC 3 cut(s) 141, 291, 507
Hsp92II CATG 4 cut(s) 302, 459, 647, 657
KpnI GGTACC 1 cut(s) 525
Kzo9I GATC 2 cut(s) 301, 358
LmnI GCTCC 3 cut(s) 677, 697, 823
Lsp1109I GCAGC 4 cut(s) 163, 613, 721, 724
LweI GCATC 1 cut(s) 54
MaeI CTAG 2 cut(s) 74, 227
MaeIII GTNAC 2 cut(s) 161, 646
MalI GATC 2 cut(s) 303, 360
MbiI CCGCTC 2 cut(s) 113, 755
MboI GATC 2 cut(s) 301, 358
MboII GAAGA 8 cut(s) 70, 73, 206, 482, 651, 760, 829, 860
MflI RGATCY 1 cut(s) 358
MhlI GDGCHC 2 cut(s) 287, 694
MlsI TGGCCA 1 cut(s) 494
MluCI AATT 4 cut(s) 49, 323, 639, 765
MluNI TGGCCA 1 cut(s) 494
MlyI GAGTC 2 cut(s) 109, 241
Mox20I TGGCCA 1 cut(s) 494
MscI TGGCCA 1 cut(s) 494
MseI TTAA 2 cut(s) 321, 723
Msp20I TGGCCA 1 cut(s) 494
MspA1I CMGCKG 2 cut(s) 569, 687
MspI CCGG 6 cut(s) 35, 54, 68, 87, 380, 404
MspR9I CCNGG 5 cut(s) 35, 55, 122, 598, 703
MvaI CCWGG 3 cut(s) 122, 598, 703
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 761
NciI CCSGG 2 cut(s) 35, 55
NdeII GATC 2 cut(s) 301, 358
NlaIII CATG 4 cut(s) 302, 459, 647, 657
NlaIV GGNNCC 5 cut(s) 85, 190, 523, 556, 693
NmuCI GTSAC 2 cut(s) 161, 646
NruI TCGCGA 1 cut(s) 252
PagI TCATGA 1 cut(s) 298
PfeI GAWTC 1 cut(s) 370
PflMI CCANNNNNTGG 1 cut(s) 279
PfoI TCCNGGA 2 cut(s) 33, 53
PkrI GCNGC 4 cut(s) 178, 603, 736, 739
PleI GAGTC 2 cut(s) 108, 241
PpsI GAGTC 2 cut(s) 108, 241
PshAI GACNNNNGTC 1 cut(s) 234
Psp6I CCWGG 3 cut(s) 120, 596, 701
PspFI CCCAGC 4 cut(s) 313, 340, 484, 687
PspGI CCWGG 3 cut(s) 120, 596, 701
PspN4I GGNNCC 5 cut(s) 85, 190, 523, 556, 693
PspPI GGNCC 1 cut(s) 555
PstNI CAGNNNCTG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 687
RruI TCGCGA 1 cut(s) 252
RsaI GTAC 2 cut(s) 45, 523
RsaNI GTAC 2 cut(s) 44, 522
SalI GTCGAC 1 cut(s) 869
SaqAI TTAA 2 cut(s) 321, 723
SatI GCNGC 4 cut(s) 177, 602, 735, 738
Sau3AI GATC 2 cut(s) 301, 358
Sau96I GGNCC 1 cut(s) 555
ScaI AGTACT 1 cut(s) 45
SchI GAGTC 2 cut(s) 109, 241
ScrFI CCNGG 5 cut(s) 35, 55, 122, 598, 703
SduI GDGCHC 2 cut(s) 287, 694
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 2 cut(s) 332, 478
SgrDI CGTCGACG 1 cut(s) 869
SinI GGWCC 1 cut(s) 555
Sse9I AATT 4 cut(s) 49, 323, 639, 765
SsiI CCGC 3 cut(s) 111, 569, 755
SspI AATATT 1 cut(s) 813
SspMI CTAG 2 cut(s) 74, 227
StyD4I CCNGG 5 cut(s) 33, 53, 120, 596, 701
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 1 cut(s) 161
TaqI TCGA 4 cut(s) 138, 419, 770, 870
TaqII GACCGA 1 cut(s) 246
TasI AATT 4 cut(s) 49, 323, 639, 765
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 2 cut(s) 321, 723
Tru9I TTAA 2 cut(s) 321, 723
TscAI CASTG 2 cut(s) 178, 292
TseFI GTSAC 2 cut(s) 161, 646
TseI GCWGC 4 cut(s) 176, 601, 734, 737
Tsp45I GTSAC 2 cut(s) 161, 646
TspDTI ATGAA 5 cut(s) 253, 362, 404, 602, 632
TspGWI ACGGA 1 cut(s) 856
TspRI CASTG 2 cut(s) 178, 292
Van91I CCANNNNNTGG 1 cut(s) 279
VneI GTGCAC 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 555
XapI RAATTY 2 cut(s) 49, 639
XmiI GTMKAC 1 cut(s) 870
XspI CTAG 2 cut(s) 74, 227
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.